Iron in PDB 3e7g: Structure of Human Inosox with Inhibitor Ar-C95791
Enzymatic activity of Structure of Human Inosox with Inhibitor Ar-C95791
All present enzymatic activity of Structure of Human Inosox with Inhibitor Ar-C95791:
1.14.13.39;
Protein crystallography data
The structure of Structure of Human Inosox with Inhibitor Ar-C95791, PDB code: 3e7g
was solved by
E.D.Garcin,
A.S.Arvai,
R.J.Rosenfeld,
M.D.Kroeger,
B.R.Crane,
G.Andersson,
G.Andrews,
P.J.Hamley,
P.R.Mallinder,
D.J.Nicholls,
S.A.St-Gallay,
A.C.Tinker,
N.P.Gensmantel,
A.Mete,
D.R.Cheshire,
S.Connolly,
D.J.Stueh,
A.Aberg,
A.V.Wallace,
J.A.Tainer,
E.D.Getzoff,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
39.51 /
2.20
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
90.206,
158.671,
191.141,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
18.2 /
21.3
|
Other elements in 3e7g:
The structure of Structure of Human Inosox with Inhibitor Ar-C95791 also contains other interesting chemical elements:
Iron Binding Sites:
The binding sites of Iron atom in the Structure of Human Inosox with Inhibitor Ar-C95791
(pdb code 3e7g). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the
Structure of Human Inosox with Inhibitor Ar-C95791, PDB code: 3e7g:
Jump to Iron binding site number:
1;
2;
3;
4;
Iron binding site 1 out
of 4 in 3e7g
Go back to
Iron Binding Sites List in 3e7g
Iron binding site 1 out
of 4 in the Structure of Human Inosox with Inhibitor Ar-C95791
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Structure of Human Inosox with Inhibitor Ar-C95791 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe901
b:32.4
occ:1.00
|
FE
|
A:HEM901
|
0.0
|
32.4
|
1.0
|
ND
|
A:HEM901
|
2.0
|
31.2
|
1.0
|
NB
|
A:HEM901
|
2.1
|
30.9
|
1.0
|
NC
|
A:HEM901
|
2.1
|
32.4
|
1.0
|
NA
|
A:HEM901
|
2.1
|
31.1
|
1.0
|
SG
|
A:CYS200
|
2.6
|
33.2
|
1.0
|
C1D
|
A:HEM901
|
3.0
|
31.7
|
1.0
|
C4D
|
A:HEM901
|
3.1
|
32.0
|
1.0
|
C4C
|
A:HEM901
|
3.1
|
32.9
|
1.0
|
C1B
|
A:HEM901
|
3.1
|
30.8
|
1.0
|
C4A
|
A:HEM901
|
3.1
|
31.1
|
1.0
|
C1C
|
A:HEM901
|
3.1
|
32.2
|
1.0
|
C1A
|
A:HEM901
|
3.1
|
31.1
|
1.0
|
C4B
|
A:HEM901
|
3.1
|
30.8
|
1.0
|
CB
|
A:CYS200
|
3.4
|
32.8
|
1.0
|
CHD
|
A:HEM901
|
3.4
|
32.3
|
1.0
|
CHB
|
A:HEM901
|
3.4
|
29.8
|
1.0
|
CHA
|
A:HEM901
|
3.4
|
32.2
|
1.0
|
CHC
|
A:HEM901
|
3.5
|
31.0
|
1.0
|
CA
|
A:CYS200
|
4.1
|
33.6
|
1.0
|
C3
|
A:AT2906
|
4.1
|
28.0
|
1.0
|
C1
|
A:AT2906
|
4.2
|
28.0
|
1.0
|
C2
|
A:AT2906
|
4.2
|
28.8
|
1.0
|
C2D
|
A:HEM901
|
4.2
|
31.6
|
1.0
|
C3D
|
A:HEM901
|
4.3
|
31.2
|
1.0
|
C3C
|
A:HEM901
|
4.3
|
34.0
|
1.0
|
C2C
|
A:HEM901
|
4.3
|
32.9
|
1.0
|
C2B
|
A:HEM901
|
4.3
|
30.6
|
1.0
|
C3B
|
A:HEM901
|
4.3
|
30.5
|
1.0
|
C2A
|
A:HEM901
|
4.4
|
30.3
|
1.0
|
C3A
|
A:HEM901
|
4.4
|
30.7
|
1.0
|
NE1
|
A:TRP194
|
4.4
|
33.8
|
1.0
|
C4
|
A:AT2906
|
4.8
|
28.5
|
1.0
|
C
|
A:CYS200
|
4.9
|
34.3
|
1.0
|
N
|
A:GLY202
|
4.9
|
33.7
|
1.0
|
C7
|
A:AT2906
|
5.0
|
29.1
|
1.0
|
CD1
|
A:TRP194
|
5.0
|
34.6
|
1.0
|
N
|
A:ILE201
|
5.0
|
33.5
|
1.0
|
|
Iron binding site 2 out
of 4 in 3e7g
Go back to
Iron Binding Sites List in 3e7g
Iron binding site 2 out
of 4 in the Structure of Human Inosox with Inhibitor Ar-C95791
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Structure of Human Inosox with Inhibitor Ar-C95791 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe1901
b:37.0
occ:1.00
|
FE
|
B:HEM1901
|
0.0
|
37.0
|
1.0
|
ND
|
B:HEM1901
|
2.1
|
34.1
|
1.0
|
NA
|
B:HEM1901
|
2.1
|
33.9
|
1.0
|
NC
|
B:HEM1901
|
2.1
|
35.2
|
1.0
|
NB
|
B:HEM1901
|
2.1
|
34.4
|
1.0
|
SG
|
B:CYS200
|
2.5
|
32.4
|
1.0
|
C1D
|
B:HEM1901
|
3.1
|
33.8
|
1.0
|
C4D
|
B:HEM1901
|
3.1
|
34.2
|
1.0
|
C4A
|
B:HEM1901
|
3.1
|
34.0
|
1.0
|
C4C
|
B:HEM1901
|
3.1
|
34.7
|
1.0
|
C1A
|
B:HEM1901
|
3.1
|
34.4
|
1.0
|
C1C
|
B:HEM1901
|
3.1
|
34.9
|
1.0
|
C1B
|
B:HEM1901
|
3.1
|
34.3
|
1.0
|
C4B
|
B:HEM1901
|
3.1
|
34.7
|
1.0
|
CB
|
B:CYS200
|
3.3
|
31.9
|
1.0
|
CHC
|
B:HEM1901
|
3.5
|
34.3
|
1.0
|
CHD
|
B:HEM1901
|
3.5
|
34.3
|
1.0
|
CHA
|
B:HEM1901
|
3.5
|
34.6
|
1.0
|
CHB
|
B:HEM1901
|
3.5
|
33.5
|
1.0
|
C3
|
B:AT21906
|
4.1
|
27.5
|
1.0
|
CA
|
B:CYS200
|
4.2
|
32.1
|
1.0
|
C2
|
B:AT21906
|
4.2
|
28.2
|
1.0
|
C1
|
B:AT21906
|
4.3
|
27.9
|
1.0
|
C3D
|
B:HEM1901
|
4.3
|
33.8
|
1.0
|
C3C
|
B:HEM1901
|
4.3
|
34.7
|
1.0
|
C2D
|
B:HEM1901
|
4.3
|
34.1
|
1.0
|
C2C
|
B:HEM1901
|
4.3
|
34.5
|
1.0
|
C2B
|
B:HEM1901
|
4.3
|
34.7
|
1.0
|
C2A
|
B:HEM1901
|
4.4
|
34.7
|
1.0
|
C3A
|
B:HEM1901
|
4.4
|
34.3
|
1.0
|
C3B
|
B:HEM1901
|
4.4
|
35.4
|
1.0
|
NE1
|
B:TRP194
|
4.4
|
34.3
|
1.0
|
C4
|
B:AT21906
|
4.8
|
28.8
|
1.0
|
C
|
B:CYS200
|
4.8
|
32.6
|
1.0
|
N
|
B:GLY202
|
4.8
|
32.6
|
1.0
|
C7
|
B:AT21906
|
5.0
|
28.6
|
1.0
|
|
Iron binding site 3 out
of 4 in 3e7g
Go back to
Iron Binding Sites List in 3e7g
Iron binding site 3 out
of 4 in the Structure of Human Inosox with Inhibitor Ar-C95791
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Structure of Human Inosox with Inhibitor Ar-C95791 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe2901
b:28.0
occ:1.00
|
FE
|
C:HEM2901
|
0.0
|
28.0
|
1.0
|
NC
|
C:HEM2901
|
2.0
|
28.1
|
1.0
|
ND
|
C:HEM2901
|
2.0
|
29.3
|
1.0
|
NA
|
C:HEM2901
|
2.0
|
30.3
|
1.0
|
NB
|
C:HEM2901
|
2.1
|
28.6
|
1.0
|
SG
|
C:CYS200
|
2.5
|
29.7
|
1.0
|
C4C
|
C:HEM2901
|
3.0
|
28.0
|
1.0
|
C4D
|
C:HEM2901
|
3.1
|
29.9
|
1.0
|
C1A
|
C:HEM2901
|
3.1
|
29.5
|
1.0
|
C1C
|
C:HEM2901
|
3.1
|
28.5
|
1.0
|
C1D
|
C:HEM2901
|
3.1
|
29.3
|
1.0
|
C4A
|
C:HEM2901
|
3.1
|
29.6
|
1.0
|
C4B
|
C:HEM2901
|
3.1
|
28.2
|
1.0
|
C1B
|
C:HEM2901
|
3.1
|
29.1
|
1.0
|
CB
|
C:CYS200
|
3.4
|
29.2
|
1.0
|
CHA
|
C:HEM2901
|
3.4
|
29.4
|
1.0
|
CHD
|
C:HEM2901
|
3.5
|
28.5
|
1.0
|
CHC
|
C:HEM2901
|
3.5
|
27.6
|
1.0
|
CHB
|
C:HEM2901
|
3.5
|
29.2
|
1.0
|
C3
|
C:AT22906
|
4.1
|
25.9
|
1.0
|
C1
|
C:AT22906
|
4.2
|
25.0
|
1.0
|
C2
|
C:AT22906
|
4.2
|
26.2
|
1.0
|
CA
|
C:CYS200
|
4.2
|
30.0
|
1.0
|
C3C
|
C:HEM2901
|
4.3
|
28.2
|
1.0
|
C2A
|
C:HEM2901
|
4.3
|
30.0
|
1.0
|
C2C
|
C:HEM2901
|
4.3
|
28.5
|
1.0
|
C3A
|
C:HEM2901
|
4.3
|
29.5
|
1.0
|
C3D
|
C:HEM2901
|
4.3
|
29.6
|
1.0
|
C2D
|
C:HEM2901
|
4.3
|
28.6
|
1.0
|
C2B
|
C:HEM2901
|
4.4
|
29.4
|
1.0
|
C3B
|
C:HEM2901
|
4.4
|
29.7
|
1.0
|
NE1
|
C:TRP194
|
4.5
|
25.2
|
1.0
|
C4
|
C:AT22906
|
4.8
|
27.0
|
1.0
|
C
|
C:CYS200
|
4.9
|
31.1
|
1.0
|
C7
|
C:AT22906
|
4.9
|
26.9
|
1.0
|
N
|
C:GLY202
|
4.9
|
30.6
|
1.0
|
|
Iron binding site 4 out
of 4 in 3e7g
Go back to
Iron Binding Sites List in 3e7g
Iron binding site 4 out
of 4 in the Structure of Human Inosox with Inhibitor Ar-C95791
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Structure of Human Inosox with Inhibitor Ar-C95791 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe3901
b:32.7
occ:1.00
|
FE
|
D:HEM3901
|
0.0
|
32.7
|
1.0
|
ND
|
D:HEM3901
|
2.0
|
30.3
|
1.0
|
NA
|
D:HEM3901
|
2.1
|
32.2
|
1.0
|
NB
|
D:HEM3901
|
2.1
|
32.6
|
1.0
|
NC
|
D:HEM3901
|
2.1
|
32.3
|
1.0
|
SG
|
D:CYS200
|
2.6
|
37.2
|
1.0
|
C1B
|
D:HEM3901
|
3.0
|
33.5
|
1.0
|
C1D
|
D:HEM3901
|
3.0
|
31.4
|
1.0
|
C4D
|
D:HEM3901
|
3.1
|
31.6
|
1.0
|
C4A
|
D:HEM3901
|
3.1
|
33.4
|
1.0
|
C1A
|
D:HEM3901
|
3.1
|
32.7
|
1.0
|
C4C
|
D:HEM3901
|
3.1
|
32.2
|
1.0
|
C1C
|
D:HEM3901
|
3.1
|
32.4
|
1.0
|
C4B
|
D:HEM3901
|
3.1
|
33.0
|
1.0
|
CB
|
D:CYS200
|
3.3
|
34.5
|
1.0
|
CHB
|
D:HEM3901
|
3.4
|
33.2
|
1.0
|
CHA
|
D:HEM3901
|
3.4
|
32.4
|
1.0
|
CHD
|
D:HEM3901
|
3.4
|
31.4
|
1.0
|
CHC
|
D:HEM3901
|
3.5
|
32.6
|
1.0
|
C3
|
D:AT23906
|
4.1
|
27.4
|
1.0
|
CA
|
D:CYS200
|
4.2
|
33.9
|
1.0
|
C2
|
D:AT23906
|
4.2
|
29.1
|
1.0
|
C1
|
D:AT23906
|
4.2
|
27.3
|
1.0
|
C2B
|
D:HEM3901
|
4.3
|
33.6
|
1.0
|
C3D
|
D:HEM3901
|
4.3
|
31.4
|
1.0
|
C2D
|
D:HEM3901
|
4.3
|
31.5
|
1.0
|
C2A
|
D:HEM3901
|
4.3
|
34.0
|
1.0
|
C2C
|
D:HEM3901
|
4.3
|
31.6
|
1.0
|
C3B
|
D:HEM3901
|
4.3
|
33.6
|
1.0
|
C3A
|
D:HEM3901
|
4.3
|
33.8
|
1.0
|
C3C
|
D:HEM3901
|
4.3
|
31.9
|
1.0
|
NE1
|
D:TRP194
|
4.5
|
36.8
|
1.0
|
C4
|
D:AT23906
|
4.8
|
27.5
|
1.0
|
C
|
D:CYS200
|
4.8
|
33.5
|
1.0
|
N
|
D:GLY202
|
4.9
|
35.6
|
1.0
|
C7
|
D:AT23906
|
4.9
|
29.2
|
1.0
|
|
Reference:
E.D.Garcin,
A.S.Arvai,
R.J.Rosenfeld,
M.D.Kroeger,
B.R.Crane,
G.Andersson,
G.Andrews,
P.J.Hamley,
P.R.Mallinder,
D.J.Nicholls,
S.A.St-Gallay,
A.C.Tinker,
N.P.Gensmantel,
A.Mete,
D.R.Cheshire,
S.Connolly,
D.J.Stuehr,
A.Aberg,
A.V.Wallace,
J.A.Tainer,
E.D.Getzoff.
Anchored Plasticity Opens Doors For Selective Inhibitor Design in Nitric Oxide Synthase. Nat.Chem.Biol. V. 4 700 2008.
ISSN: ISSN 1552-4450
PubMed: 18849972
DOI: 10.1038/NCHEMBIO.115
Page generated: Sun Aug 4 09:26:17 2024
|