Atomistry » Iron » PDB 3ebd-3esf » 3ecx
Atomistry »
  Iron »
    PDB 3ebd-3esf »
      3ecx »

Iron in PDB 3ecx: Carbonmonoxy Sperm Whale Myoglobin at 100 K: Laser on [30 Min]

Protein crystallography data

The structure of Carbonmonoxy Sperm Whale Myoglobin at 100 K: Laser on [30 Min], PDB code: 3ecx was solved by A.Tomita, T.Sato, K.Ichiyanagi, S.Nozawa, H.Ichikawa, M.Chollet, F.Kawai, S.-Y.Park, S.Koshihara, S.Adachi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 16.51 / 1.21
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 34.325, 30.612, 63.634, 90.00, 105.38, 90.00
R / Rfree (%) 15.5 / 21.1

Iron Binding Sites:

The binding sites of Iron atom in the Carbonmonoxy Sperm Whale Myoglobin at 100 K: Laser on [30 Min] (pdb code 3ecx). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Carbonmonoxy Sperm Whale Myoglobin at 100 K: Laser on [30 Min], PDB code: 3ecx:

Iron binding site 1 out of 1 in 3ecx

Go back to Iron Binding Sites List in 3ecx
Iron binding site 1 out of 1 in the Carbonmonoxy Sperm Whale Myoglobin at 100 K: Laser on [30 Min]


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Carbonmonoxy Sperm Whale Myoglobin at 100 K: Laser on [30 Min] within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe154

b:9.9
occ:1.00
FE A:HEM154 0.0 9.9 1.0
C A:CMO155 2.0 11.6 1.0
ND A:HEM154 2.0 10.0 1.0
NC A:HEM154 2.0 9.7 1.0
NB A:HEM154 2.0 9.6 1.0
NA A:HEM154 2.0 10.6 1.0
NE2 A:HIS93 2.1 8.7 1.0
CE1 A:HIS93 3.0 11.6 1.0
C1D A:HEM154 3.1 9.9 1.0
C4A A:HEM154 3.1 10.8 1.0
C4D A:HEM154 3.1 11.6 1.0
C4C A:HEM154 3.1 10.4 1.0
C1C A:HEM154 3.1 10.2 1.0
C4B A:HEM154 3.1 9.6 1.0
C1A A:HEM154 3.1 10.9 1.0
C1B A:HEM154 3.1 10.2 1.0
CD2 A:HIS93 3.1 9.8 1.0
O A:CMO155 3.1 28.1 1.0
CHD A:HEM154 3.4 11.0 1.0
CHC A:HEM154 3.4 10.4 1.0
CHB A:HEM154 3.4 10.0 1.0
CHA A:HEM154 3.4 12.8 1.0
ND1 A:HIS93 4.2 12.1 1.0
C3C A:HEM154 4.2 11.0 1.0
CG A:HIS93 4.3 8.9 1.0
C3A A:HEM154 4.3 11.8 1.0
C2C A:HEM154 4.3 10.2 1.0
C2D A:HEM154 4.3 11.7 1.0
C3D A:HEM154 4.3 12.8 1.0
C3B A:HEM154 4.3 9.1 1.0
C2A A:HEM154 4.3 11.1 1.0
C2B A:HEM154 4.3 9.4 1.0
NE2 A:HIS64 4.5 18.9 1.0
CG2 A:VAL68 4.6 11.7 1.0

Reference:

A.Tomita, T.Sato, K.Ichiyanagi, S.Nozawa, H.Ichikawa, M.Chollet, F.Kawai, S.-Y.Park, T.Tsuduki, T.Yamato, S.Y.Koshihara, S.Adachi. Visualizing Breathing Motion of Internal Cavities in Concert with Ligand Migration in Myoglobin Proc.Natl.Acad.Sci.Usa V. 106 2612 2009.
ISSN: ISSN 0027-8424
PubMed: 19204297
DOI: 10.1073/PNAS.0807774106
Page generated: Sun Dec 13 15:04:52 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy