Atomistry » Iron » PDB 3etr-3fou » 3fkg
Atomistry »
  Iron »
    PDB 3etr-3fou »
      3fkg »

Iron in PDB 3fkg: Crystal Structure Analysis of Fungal Versatile Peroxidase From Pleurotus Eryngii

Enzymatic activity of Crystal Structure Analysis of Fungal Versatile Peroxidase From Pleurotus Eryngii

All present enzymatic activity of Crystal Structure Analysis of Fungal Versatile Peroxidase From Pleurotus Eryngii:
1.11.1.16;

Protein crystallography data

The structure of Crystal Structure Analysis of Fungal Versatile Peroxidase From Pleurotus Eryngii, PDB code: 3fkg was solved by K.Piontek, A.T.Martinez, T.Choinowski, D.A.Plattner, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.90 / 1.81
Space group P 43
Cell size a, b, c (Å), α, β, γ (°) 62.683, 62.683, 98.217, 90.00, 90.00, 90.00
R / Rfree (%) 15.2 / 20.1

Other elements in 3fkg:

The structure of Crystal Structure Analysis of Fungal Versatile Peroxidase From Pleurotus Eryngii also contains other interesting chemical elements:

Arsenic (As) 2 atoms
Calcium (Ca) 2 atoms
Zinc (Zn) 7 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure Analysis of Fungal Versatile Peroxidase From Pleurotus Eryngii (pdb code 3fkg). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Crystal Structure Analysis of Fungal Versatile Peroxidase From Pleurotus Eryngii, PDB code: 3fkg:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 3fkg

Go back to Iron Binding Sites List in 3fkg
Iron binding site 1 out of 4 in the Crystal Structure Analysis of Fungal Versatile Peroxidase From Pleurotus Eryngii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure Analysis of Fungal Versatile Peroxidase From Pleurotus Eryngii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe350

b:16.6
occ:1.00
 FE A:HEM350 0.0 16.6 1.0
NA A:HEM350 2.1 16.4 1.0
ND A:HEM350 2.1 14.7 1.0
NC A:HEM350 2.1 16.1 1.0
NB A:HEM350 2.1 16.7 1.0
NE2 A:HIS169 2.1 17.1 1.0
O A:HOH595 2.7 43.1 1.0
C1A A:HEM350 3.1 17.9 1.0
C1C A:HEM350 3.1 14.2 1.0
C1B A:HEM350 3.1 16.4 1.0
C1D A:HEM350 3.1 14.0 1.0
C4B A:HEM350 3.1 18.5 1.0
CE1 A:HIS169 3.1 13.3 1.0
C4D A:HEM350 3.1 15.9 1.0
C4A A:HEM350 3.1 17.6 1.0
CD2 A:HIS169 3.2 16.8 1.0
C4C A:HEM350 3.2 15.8 1.0
CHA A:HEM350 3.4 16.0 1.0
CHC A:HEM350 3.5 16.3 1.0
CHB A:HEM350 3.5 16.2 1.0
CHD A:HEM350 3.5 14.6 1.0
O A:HOH512 4.2 48.2 1.0
ND1 A:HIS169 4.2 15.8 1.0
CG A:HIS169 4.3 15.4 1.0
C2B A:HEM350 4.3 17.8 1.0
C3D A:HEM350 4.3 16.3 1.0
C3A A:HEM350 4.3 17.3 1.0
C3B A:HEM350 4.3 17.2 1.0
C2A A:HEM350 4.3 15.4 1.0
C2D A:HEM350 4.3 14.0 1.0
C2C A:HEM350 4.3 15.7 1.0
C3C A:HEM350 4.4 16.7 1.0
O A:HOH356 4.7 22.4 1.0
CD2 A:LEU166 4.9 15.8 1.0

Iron binding site 2 out of 4 in 3fkg

Go back to Iron Binding Sites List in 3fkg
Iron binding site 2 out of 4 in the Crystal Structure Analysis of Fungal Versatile Peroxidase From Pleurotus Eryngii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure Analysis of Fungal Versatile Peroxidase From Pleurotus Eryngii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe335

b:31.1
occ:0.50
 O A:HOH408 2.0 18.3 0.5
O A:HOH409 2.2 34.8 0.5
OD2 A:ASP318 3.0 21.3 1.0
NE2 A:HIS293 3.6 42.8 1.0
OG A:SER188 4.0 20.3 1.0
CE1 A:HIS293 4.0 41.6 1.0
CG A:ASP318 4.2 47.0 1.0
CD2 A:HIS293 4.5 41.8 1.0
CB A:SER188 4.5 20.9 1.0
CG2 A:THR189 4.7 23.7 1.0
CB A:ASP318 4.8 50.5 1.0

Iron binding site 3 out of 4 in 3fkg

Go back to Iron Binding Sites List in 3fkg
Iron binding site 3 out of 4 in the Crystal Structure Analysis of Fungal Versatile Peroxidase From Pleurotus Eryngii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure Analysis of Fungal Versatile Peroxidase From Pleurotus Eryngii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe340

b:32.8
occ:0.33
 OD2 A:ASP175 2.0 37.3 1.0
O A:HOH414 2.4 25.7 0.3
OE1 A:GLU83 2.4 36.0 1.0
CG A:ASP175 3.1 33.6 1.0
ZN A:ZN339 3.3 24.1 0.3
OE2 A:GLU40 3.4 35.5 1.0
CD A:GLU83 3.6 35.8 1.0
ZN A:ZN337 3.7 17.9 0.3
CB A:ASP175 3.7 26.4 1.0
OD1 A:ASP175 4.0 31.3 1.0
O A:HOH580 4.2 31.1 1.0
OE2 A:GLU83 4.3 37.5 1.0
O A:HOH542 4.5 21.0 1.0
CD A:GLU40 4.5 30.2 1.0
O A:GLY80 4.5 27.6 1.0
CB A:GLU83 4.7 27.3 1.0
O A:HOH458 4.7 24.4 0.7
CG A:GLU83 4.7 33.5 1.0
O1D A:HEM350 4.9 25.0 1.0

Iron binding site 4 out of 4 in 3fkg

Go back to Iron Binding Sites List in 3fkg
Iron binding site 4 out of 4 in the Crystal Structure Analysis of Fungal Versatile Peroxidase From Pleurotus Eryngii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure Analysis of Fungal Versatile Peroxidase From Pleurotus Eryngii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe341

b:18.2
occ:0.33
 O A:HOH416 1.9 24.5 0.3
OD1 A:ASP69 2.0 25.6 1.0
O A:HOH415 2.3 18.1 0.3
O A:HOH417 2.4 16.5 0.3
CG A:ASP69 3.0 29.6 1.0
OD2 A:ASP69 3.3 30.8 1.0
NZ A:LYS89 3.7 41.0 1.0
O A:HOH629 3.8 32.8 0.7
OG1 A:THR70 3.9 32.9 1.0
O A:ILE66 4.3 20.3 1.0
O A:ALA67 4.3 21.8 1.0
N A:ASP69 4.4 21.4 1.0
N A:THR70 4.4 22.1 1.0
CB A:ASP69 4.4 21.9 1.0
CE A:LYS89 4.6 37.4 1.0
CA A:ASP69 4.8 23.1 1.0
CB A:THR70 4.9 27.7 1.0

Reference:

K.Piontek, T.Choinowski, M.Perez-Boada, F.J.Ruiz-Duenas, M.J.Martinez, D.A.Plattner, A.T.Martinez. Structural and Site-Directed Mutagenesis Study of Versatile Peroxidase Oxidizing Both Mn(II) and Aromatic Substrates To Be Published.
Page generated: Sun Dec 13 15:05:40 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy