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Iron in PDB 3fo3: Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase Reduced By Sodium Dithionite (Sulfite Complex)

Protein crystallography data

The structure of Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase Reduced By Sodium Dithionite (Sulfite Complex), PDB code: 3fo3 was solved by A.A.Trofimov, K.M.Polyakov, K.M.Boyko, A.Slutsky, T.V.Tikhonova, A.N.Antipov, R.A.Zvyagilskaya, A.N.Popov, V.S.Lamzin, G.P.Bourenkov, V.O.Popov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 12.00 / 1.40
Space group P 21 3
Cell size a, b, c (Å), α, β, γ (°) 193.790, 193.790, 193.790, 90.00, 90.00, 90.00
R / Rfree (%) 12.6 / 13.9

Other elements in 3fo3:

The structure of Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase Reduced By Sodium Dithionite (Sulfite Complex) also contains other interesting chemical elements:

Calcium (Ca) 4 atoms
Sodium (Na) 5 atoms

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 16;

Binding sites:

The binding sites of Iron atom in the Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase Reduced By Sodium Dithionite (Sulfite Complex) (pdb code 3fo3). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 16 binding sites of Iron where determined in the Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase Reduced By Sodium Dithionite (Sulfite Complex), PDB code: 3fo3:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 16 in 3fo3

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Iron binding site 1 out of 16 in the Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase Reduced By Sodium Dithionite (Sulfite Complex)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase Reduced By Sodium Dithionite (Sulfite Complex) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1004

b:12.8
occ:1.00
FE A:HEC1004 0.0 12.8 1.0
NZ A:LYS188 1.9 15.4 1.0
NA A:HEC1004 2.0 12.3 1.0
NC A:HEC1004 2.0 12.4 1.0
ND A:HEC1004 2.0 12.2 1.0
NB A:HEC1004 2.0 13.1 1.0
S A:SO3526 2.2 14.7 1.0
C1A A:HEC1004 3.0 11.6 1.0
C4A A:HEC1004 3.0 12.9 1.0
C4C A:HEC1004 3.0 12.2 1.0
C1C A:HEC1004 3.0 12.6 1.0
C4D A:HEC1004 3.0 11.3 1.0
C1D A:HEC1004 3.1 12.0 1.0
C4B A:HEC1004 3.1 13.0 1.0
O2 A:SO3526 3.1 15.0 1.0
CE A:LYS188 3.1 15.9 1.0
C1B A:HEC1004 3.1 14.3 1.0
O1 A:SO3526 3.2 18.8 1.0
O3 A:SO3526 3.2 17.6 1.0
HE3 A:LYS188 3.2 15.7 1.0
HE2 A:LYS188 3.3 15.5 1.0
CHA A:HEC1004 3.4 12.3 1.0
CHC A:HEC1004 3.4 13.9 1.0
CHD A:HEC1004 3.4 11.9 1.0
CHB A:HEC1004 3.4 13.8 1.0
C2A A:HEC1004 4.2 12.9 1.0
C3A A:HEC1004 4.2 13.0 1.0
C3D A:HEC1004 4.3 11.9 1.0
C2C A:HEC1004 4.3 12.7 1.0
C3C A:HEC1004 4.3 13.1 1.0
C2D A:HEC1004 4.3 12.5 1.0
C3B A:HEC1004 4.3 14.4 1.0
C2B A:HEC1004 4.3 13.7 1.0
HHA A:HEC1004 4.4 11.9 1.0
HHC A:HEC1004 4.4 13.2 1.0
HHD A:HEC1004 4.4 12.2 1.0
HHB A:HEC1004 4.4 13.9 1.0
HH21 A:ARG131 4.4 13.7 1.0
CD A:LYS188 4.4 14.1 1.0
NE2 A:HIS361 4.5 13.0 1.0
O A:HOH874 4.5 18.7 1.0
HD3 A:LYS188 4.6 14.5 1.0
HD2 A:LYS188 4.7 14.5 1.0
OH A:TYR303 4.7 15.9 1.0
HH22 A:ARG131 4.8 14.2 1.0
HB2 A:CYS187 4.9 12.8 1.0
CMD A:HEC1006 4.9 11.9 1.0
O A:HOH863 4.9 18.3 1.0
NH2 A:ARG131 4.9 14.2 1.0
HD2 A:HIS361 5.0 12.1 1.0

Iron binding site 2 out of 16 in 3fo3

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Iron binding site 2 out of 16 in the Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase Reduced By Sodium Dithionite (Sulfite Complex)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase Reduced By Sodium Dithionite (Sulfite Complex) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1005

b:12.3
occ:1.00
FE A:HEC1005 0.0 12.3 1.0
NC A:HEC1005 2.0 11.6 1.0
NE2 A:HIS398 2.0 11.9 1.0
NE2 A:HIS231 2.0 11.9 1.0
ND A:HEC1005 2.0 12.1 1.0
NA A:HEC1005 2.0 12.3 1.0
NB A:HEC1005 2.0 11.7 1.0
CE1 A:HIS231 3.0 12.2 1.0
CE1 A:HIS398 3.0 12.8 1.0
CD2 A:HIS398 3.0 12.3 1.0
C1C A:HEC1005 3.0 11.7 1.0
C4D A:HEC1005 3.0 12.1 1.0
CD2 A:HIS231 3.0 12.7 1.0
C1D A:HEC1005 3.0 11.5 1.0
C1A A:HEC1005 3.0 12.3 1.0
C4C A:HEC1005 3.0 11.6 1.0
C4A A:HEC1005 3.0 12.5 1.0
C4B A:HEC1005 3.0 11.7 1.0
C1B A:HEC1005 3.1 12.2 1.0
HE1 A:HIS231 3.2 12.3 1.0
HE1 A:HIS398 3.2 12.6 1.0
HD2 A:HIS398 3.2 12.3 1.0
HD2 A:HIS231 3.2 12.9 1.0
CHC A:HEC1005 3.4 11.6 1.0
CHD A:HEC1005 3.4 12.5 1.0
CHA A:HEC1005 3.4 12.8 1.0
CHB A:HEC1005 3.4 12.2 1.0
ND1 A:HIS231 4.1 12.4 1.0
ND1 A:HIS398 4.1 12.2 1.0
CG A:HIS231 4.1 12.4 1.0
CG A:HIS398 4.1 12.0 1.0
C3D A:HEC1005 4.2 13.1 1.0
C2C A:HEC1005 4.2 11.5 1.0
C2D A:HEC1005 4.2 12.6 1.0
C2A A:HEC1005 4.3 12.8 1.0
C3A A:HEC1005 4.3 13.2 1.0
C3C A:HEC1005 4.3 11.6 1.0
C2B A:HEC1005 4.3 12.3 1.0
C3B A:HEC1005 4.3 12.1 1.0
HHC A:HEC1005 4.3 11.8 1.0
HHD A:HEC1005 4.4 12.3 1.0
HHA A:HEC1005 4.4 12.7 1.0
HHB A:HEC1005 4.4 12.3 1.0
HG2 A:GLN73 4.4 12.7 1.0
HB3 A:GLN73 4.6 12.8 1.0
CE A:MET384 4.7 14.3 1.0
HB2 A:CYS230 4.8 12.3 1.0
HD1 A:HIS231 4.9 12.1 1.0
HD1 A:HIS398 4.9 12.1 1.0

Iron binding site 3 out of 16 in 3fo3

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Iron binding site 3 out of 16 in the Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase Reduced By Sodium Dithionite (Sulfite Complex)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase Reduced By Sodium Dithionite (Sulfite Complex) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1006

b:11.1
occ:1.00
FE A:HEC1006 0.0 11.1 1.0
NE2 A:HIS300 2.0 11.7 1.0
NB A:HEC1006 2.0 10.8 1.0
ND A:HEC1006 2.0 11.1 1.0
NA A:HEC1006 2.0 10.7 1.0
NE2 A:HIS119 2.0 10.8 1.0
NC A:HEC1006 2.0 10.5 1.0
CE1 A:HIS119 2.9 11.1 1.0
CE1 A:HIS300 3.0 11.2 1.0
CD2 A:HIS300 3.0 11.3 1.0
C1D A:HEC1006 3.0 11.3 1.0
C1B A:HEC1006 3.0 10.1 1.0
C1A A:HEC1006 3.0 11.6 1.0
C4A A:HEC1006 3.0 10.6 1.0
C4D A:HEC1006 3.0 11.3 1.0
C4B A:HEC1006 3.0 10.9 1.0
C1C A:HEC1006 3.0 11.0 1.0
C4C A:HEC1006 3.0 10.7 1.0
CD2 A:HIS119 3.1 10.9 1.0
HE1 A:HIS119 3.1 10.9 1.0
HE1 A:HIS300 3.1 11.2 1.0
HD2 A:HIS300 3.2 11.1 1.0
HD2 A:HIS119 3.3 11.0 1.0
CHD A:HEC1006 3.4 11.2 1.0
CHB A:HEC1006 3.4 11.0 1.0
CHC A:HEC1006 3.4 10.6 1.0
CHA A:HEC1006 3.4 10.6 1.0
ND1 A:HIS300 4.1 11.7 1.0
ND1 A:HIS119 4.1 11.2 1.0
CG A:HIS300 4.1 11.6 1.0
CG A:HIS119 4.2 10.9 1.0
C2B A:HEC1006 4.2 11.0 1.0
C2D A:HEC1006 4.3 11.3 1.0
C3A A:HEC1006 4.3 10.6 1.0
C2A A:HEC1006 4.3 11.3 1.0
C3D A:HEC1006 4.3 11.3 1.0
C2C A:HEC1006 4.3 11.8 1.0
C3B A:HEC1006 4.3 11.6 1.0
C3C A:HEC1006 4.3 11.5 1.0
HHD A:HEC1006 4.3 11.3 1.0
HHB A:HEC1006 4.3 10.8 1.0
HHC A:HEC1006 4.4 10.6 1.0
HHA A:HEC1006 4.4 10.8 1.0
HAD1 A:HEC1004 4.6 11.8 1.0
HD1 A:HIS300 4.8 11.5 1.0
HD1 A:HIS119 4.9 11.2 1.0
CMD A:HEC1004 4.9 12.9 1.0
HB2 A:CYS299 5.0 12.1 1.0

Iron binding site 4 out of 16 in 3fo3

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Iron binding site 4 out of 16 in the Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase Reduced By Sodium Dithionite (Sulfite Complex)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase Reduced By Sodium Dithionite (Sulfite Complex) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1007

b:11.5
occ:1.00
FE A:HEC1007 0.0 11.5 1.0
NC A:HEC1007 1.9 10.8 1.0
NE2 A:HIS491 2.0 11.4 1.0
NE2 A:HIS383 2.0 11.8 1.0
NB A:HEC1007 2.0 10.8 1.0
ND A:HEC1007 2.0 11.1 1.0
NA A:HEC1007 2.0 11.2 1.0
CE1 A:HIS491 2.9 11.8 1.0
CE1 A:HIS383 3.0 11.5 1.0
C1C A:HEC1007 3.0 11.1 1.0
C4B A:HEC1007 3.0 11.1 1.0
CD2 A:HIS383 3.0 12.3 1.0
C4C A:HEC1007 3.0 11.1 1.0
C1D A:HEC1007 3.0 11.0 1.0
C4D A:HEC1007 3.0 11.3 1.0
C4A A:HEC1007 3.0 11.7 1.0
C1B A:HEC1007 3.0 10.8 1.0
C1A A:HEC1007 3.0 11.4 1.0
CD2 A:HIS491 3.0 11.8 1.0
HE1 A:HIS491 3.1 11.8 1.0
HE1 A:HIS383 3.1 11.5 1.0
HD2 A:HIS383 3.2 12.1 1.0
HD2 A:HIS491 3.3 11.7 1.0
CHC A:HEC1007 3.3 11.6 1.0
CHD A:HEC1007 3.4 11.3 1.0
CHB A:HEC1007 3.4 10.8 1.0
CHA A:HEC1007 3.4 11.5 1.0
ND1 A:HIS491 4.0 12.1 1.0
ND1 A:HIS383 4.1 11.4 1.0
CG A:HIS383 4.1 11.6 1.0
CG A:HIS491 4.2 11.4 1.0
C2C A:HEC1007 4.2 11.4 1.0
C3C A:HEC1007 4.2 11.4 1.0
C3B A:HEC1007 4.2 11.8 1.0
C2B A:HEC1007 4.2 11.7 1.0
C3A A:HEC1007 4.2 11.8 1.0
C2A A:HEC1007 4.3 10.9 1.0
C2D A:HEC1007 4.3 12.1 1.0
C3D A:HEC1007 4.3 11.7 1.0
HHC A:HEC1007 4.3 11.3 1.0
HB3 A:SER487 4.3 11.6 1.0
HHD A:HEC1007 4.4 11.1 1.0
HHB A:HEC1007 4.4 11.0 1.0
HHA A:HEC1007 4.4 11.4 1.0
HD1 A:HIS491 4.8 11.9 1.0
HD1 A:HIS383 4.9 11.2 1.0
HB2 A:CYS382 4.9 12.3 1.0
HB2 A:SER487 4.9 11.7 1.0

Iron binding site 5 out of 16 in 3fo3

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Iron binding site 5 out of 16 in the Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase Reduced By Sodium Dithionite (Sulfite Complex)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase Reduced By Sodium Dithionite (Sulfite Complex) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1008

b:13.7
occ:1.00
FE A:HEC1008 0.0 13.7 1.0
NE2 A:HIS415 2.0 14.6 1.0
NE2 A:HIS372 2.0 13.0 1.0
ND A:HEC1008 2.0 14.4 1.0
NB A:HEC1008 2.0 13.1 1.0
NA A:HEC1008 2.0 13.6 1.0
NC A:HEC1008 2.0 13.0 1.0
CE1 A:HIS415 2.9 17.0 1.0
CD2 A:HIS372 3.0 12.8 1.0
CE1 A:HIS372 3.0 14.0 1.0
C1D A:HEC1008 3.0 14.8 1.0
C1B A:HEC1008 3.0 13.3 1.0
C4D A:HEC1008 3.0 13.8 1.0
C4B A:HEC1008 3.0 13.0 1.0
CD2 A:HIS415 3.0 14.5 1.0
C4A A:HEC1008 3.0 13.6 1.0
C1A A:HEC1008 3.0 14.6 1.0
HE1 A:HIS415 3.0 16.3 1.0
C1C A:HEC1008 3.1 13.5 1.0
C4C A:HEC1008 3.1 13.9 1.0
HD2 A:HIS372 3.1 12.6 1.0
HE1 A:HIS372 3.2 13.6 1.0
HD2 A:HIS415 3.3 14.9 1.0
CHD A:HEC1008 3.4 15.1 1.0
CHB A:HEC1008 3.4 13.8 1.0
CHA A:HEC1008 3.4 14.7 1.0
CHC A:HEC1008 3.4 13.8 1.0
ND1 A:HIS415 4.0 18.9 1.0
ND1 A:HIS372 4.1 13.8 1.0
CG A:HIS372 4.1 12.6 1.0
CG A:HIS415 4.1 15.5 1.0
C2B A:HEC1008 4.2 13.8 1.0
C3B A:HEC1008 4.2 13.4 1.0
C2D A:HEC1008 4.2 16.1 1.0
C3D A:HEC1008 4.2 16.7 1.0
C2A A:HEC1008 4.3 14.9 1.0
C3A A:HEC1008 4.3 14.1 1.0
C2C A:HEC1008 4.3 13.7 1.0
C3C A:HEC1008 4.3 14.8 1.0
HHB A:HEC1008 4.3 13.5 1.0
HHD A:HEC1008 4.3 14.6 1.0
HHC A:HEC1008 4.4 13.6 1.0
HHA A:HEC1008 4.4 14.3 1.0
HD1 A:HIS415 4.8 17.3 1.0
HZ3 A:TRP418 4.8 14.8 1.0
HD1 A:HIS372 4.9 13.5 1.0
CBC A:HEC1007 5.0 13.2 1.0
HB2 A:CYS414 5.0 18.7 1.0

Iron binding site 6 out of 16 in 3fo3

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Iron binding site 6 out of 16 in the Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase Reduced By Sodium Dithionite (Sulfite Complex)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase Reduced By Sodium Dithionite (Sulfite Complex) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1002

b:13.4
occ:1.00
FE A:HEC1002 0.0 13.4 1.0
NE2 A:HIS234 2.0 13.2 1.0
NE2 A:HIS39 2.0 12.9 1.0
NA A:HEC1002 2.0 13.0 1.0
NB A:HEC1002 2.0 12.8 1.0
NC A:HEC1002 2.0 13.5 1.0
ND A:HEC1002 2.0 12.9 1.0
CE1 A:HIS39 2.9 13.5 1.0
CE1 A:HIS234 3.0 13.8 1.0
CD2 A:HIS234 3.0 12.8 1.0
C1D A:HEC1002 3.0 12.2 1.0
CD2 A:HIS39 3.0 13.0 1.0
C4A A:HEC1002 3.0 14.0 1.0
C1A A:HEC1002 3.0 13.5 1.0
C1C A:HEC1002 3.0 13.9 1.0
C4B A:HEC1002 3.1 13.9 1.0
C1B A:HEC1002 3.1 13.0 1.0
C4D A:HEC1002 3.1 12.5 1.0
C4C A:HEC1002 3.1 12.9 1.0
HE1 A:HIS39 3.1 13.5 1.0
HE1 A:HIS234 3.2 13.9 1.0
HD2 A:HIS234 3.2 13.0 1.0
HD2 A:HIS39 3.3 13.6 1.0
CHD A:HEC1002 3.4 12.9 1.0
CHB A:HEC1002 3.4 13.1 1.0
CHC A:HEC1002 3.4 14.3 1.0
CHA A:HEC1002 3.4 13.2 1.0
ND1 A:HIS234 4.1 12.8 1.0
ND1 A:HIS39 4.1 13.1 1.0
CG A:HIS234 4.1 13.1 1.0
CG A:HIS39 4.2 13.1 1.0
C3A A:HEC1002 4.2 13.3 1.0
C2D A:HEC1002 4.2 13.4 1.0
C2A A:HEC1002 4.3 13.5 1.0
C2B A:HEC1002 4.3 13.6 1.0
C3C A:HEC1002 4.3 13.4 1.0
C3D A:HEC1002 4.3 13.0 1.0
C2C A:HEC1002 4.3 13.5 1.0
C3B A:HEC1002 4.3 13.9 1.0
HHD A:HEC1002 4.4 12.2 1.0
HHB A:HEC1002 4.4 12.7 1.0
HHC A:HEC1002 4.4 14.4 1.0
HHA A:HEC1002 4.4 13.1 1.0
HG2 A:PRO233 4.4 13.9 1.0
HB2 A:CYS38 4.6 14.7 1.0
HB2 A:PRO233 4.7 13.5 1.0
HD1 A:HIS234 4.8 13.0 1.0
HD1 A:HIS39 4.9 13.5 1.0

Iron binding site 7 out of 16 in 3fo3

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Iron binding site 7 out of 16 in the Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase Reduced By Sodium Dithionite (Sulfite Complex)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase Reduced By Sodium Dithionite (Sulfite Complex) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1003

b:12.9
occ:1.00
FE A:HEC1003 0.0 12.9 1.0
NE2 A:HIS70 2.0 13.0 1.0
ND A:HEC1003 2.0 12.9 1.0
NB A:HEC1003 2.0 12.8 1.0
NC A:HEC1003 2.0 12.7 1.0
NA A:HEC1003 2.0 12.5 1.0
NE2 A:HIS30 2.0 12.9 1.0
CE1 A:HIS30 3.0 12.8 1.0
CE1 A:HIS70 3.0 12.8 1.0
CD2 A:HIS70 3.0 12.6 1.0
C1B A:HEC1003 3.0 12.1 1.0
C4A A:HEC1003 3.0 12.7 1.0
C1D A:HEC1003 3.0 13.3 1.0
C4C A:HEC1003 3.0 12.4 1.0
C4D A:HEC1003 3.0 13.1 1.0
C1A A:HEC1003 3.0 13.8 1.0
C1C A:HEC1003 3.0 12.5 1.0
C4B A:HEC1003 3.0 11.7 1.0
CD2 A:HIS30 3.1 13.3 1.0
HE1 A:HIS30 3.1 13.0 1.0
HE1 A:HIS70 3.2 12.8 1.0
HD2 A:HIS70 3.2 12.9 1.0
HD2 A:HIS30 3.3 13.4 1.0
CHB A:HEC1003 3.3 12.3 1.0
CHD A:HEC1003 3.4 12.9 1.0
CHA A:HEC1003 3.4 13.8 1.0
CHC A:HEC1003 3.4 12.9 1.0
ND1 A:HIS70 4.1 12.8 1.0
ND1 A:HIS30 4.1 13.5 1.0
CG A:HIS70 4.1 11.9 1.0
CG A:HIS30 4.2 13.2 1.0
C2B A:HEC1003 4.2 13.6 1.0
C3A A:HEC1003 4.2 13.3 1.0
C3C A:HEC1003 4.2 12.8 1.0
C2D A:HEC1003 4.3 14.7 1.0
C2C A:HEC1003 4.3 13.0 1.0
C3D A:HEC1003 4.3 14.4 1.0
C2A A:HEC1003 4.3 14.0 1.0
C3B A:HEC1003 4.3 13.2 1.0
HHB A:HEC1003 4.3 11.9 1.0
HHD A:HEC1003 4.4 12.9 1.0
HHA A:HEC1003 4.4 13.8 1.0
HHC A:HEC1003 4.4 12.9 1.0
HB2 A:CYS69 4.7 14.5 1.0
HD1 A:HIS30 4.9 13.2 1.0
HD1 A:HIS70 4.9 12.4 1.0

Iron binding site 8 out of 16 in 3fo3

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Iron binding site 8 out of 16 in the Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase Reduced By Sodium Dithionite (Sulfite Complex)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase Reduced By Sodium Dithionite (Sulfite Complex) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1001

b:14.1
occ:1.00
FE A:HEC1001 0.0 14.1 1.0
NE2 A:HIS18 2.0 14.1 1.0
NE2 A:HIS44 2.0 13.9 1.0
ND A:HEC1001 2.0 13.8 1.0
NC A:HEC1001 2.0 13.7 1.0
NA A:HEC1001 2.0 13.8 1.0
NB A:HEC1001 2.0 13.8 1.0
CE1 A:HIS18 2.9 13.7 1.0
CE1 A:HIS44 2.9 15.2 1.0
C4D A:HEC1001 3.0 13.6 1.0
C1C A:HEC1001 3.0 14.3 1.0
CD2 A:HIS44 3.0 14.6 1.0
C1D A:HEC1001 3.0 14.7 1.0
C1A A:HEC1001 3.0 14.7 1.0
CD2 A:HIS18 3.0 14.2 1.0
C4B A:HEC1001 3.0 14.2 1.0
HE1 A:HIS18 3.0 14.1 1.0
C4C A:HEC1001 3.1 14.2 1.0
C1B A:HEC1001 3.1 13.2 1.0
C4A A:HEC1001 3.1 14.2 1.0
HE1 A:HIS44 3.1 14.7 1.0
HD2 A:HIS44 3.2 14.5 1.0
HD2 A:HIS18 3.3 14.2 1.0
CHA A:HEC1001 3.4 14.4 1.0
CHC A:HEC1001 3.4 14.9 1.0
CHD A:HEC1001 3.4 14.7 1.0
CHB A:HEC1001 3.4 14.2 1.0
ND1 A:HIS18 4.0 14.0 1.0
ND1 A:HIS44 4.1 15.4 1.0
CG A:HIS18 4.1 14.1 1.0
CG A:HIS44 4.1 14.5 1.0
HG3 A:PRO57 4.2 16.6 1.0
C2D A:HEC1001 4.2 15.2 1.0
C2C A:HEC1001 4.3 14.5 1.0
C3D A:HEC1001 4.3 15.2 1.0
C2B A:HEC1001 4.3 13.8 1.0
C3C A:HEC1001 4.3 15.3 1.0
C2A A:HEC1001 4.3 13.9 1.0
C3B A:HEC1001 4.3 14.4 1.0
C3A A:HEC1001 4.3 13.5 1.0
HHA A:HEC1001 4.4 14.3 1.0
HHC A:HEC1001 4.4 14.6 1.0
HHD A:HEC1001 4.4 13.9 1.0
HHB A:HEC1001 4.4 13.6 1.0
HD1 A:HIS18 4.8 13.9 1.0
CMA A:HEC1002 4.8 14.3 1.0
HD1 A:HIS44 4.8 15.3 1.0
HB2 A:CYS17 4.9 17.4 1.0

Iron binding site 9 out of 16 in 3fo3

Go back to Iron Binding Sites List in 3fo3
Iron binding site 9 out of 16 in the Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase Reduced By Sodium Dithionite (Sulfite Complex)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase Reduced By Sodium Dithionite (Sulfite Complex) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe1004

b:12.6
occ:1.00
FE B:HEC1004 0.0 12.6 1.0
NZ B:LYS188 1.9 15.4 1.0
NC B:HEC1004 2.0 12.1 1.0
NA B:HEC1004 2.0 12.1 1.0
NB B:HEC1004 2.0 12.4 1.0
ND B:HEC1004 2.0 11.8 1.0
S B:SO3526 2.2 14.2 1.0
C1A B:HEC1004 3.0 11.6 1.0
C4A B:HEC1004 3.0 12.4 1.0
C1C B:HEC1004 3.0 12.2 1.0
CE B:LYS188 3.0 17.7 1.0
C4C B:HEC1004 3.0 12.0 1.0
C4B B:HEC1004 3.0 13.3 1.0
C1B B:HEC1004 3.1 13.8 1.0
C1D B:HEC1004 3.1 12.0 1.0
C4D B:HEC1004 3.1 10.9 1.0
O2 B:SO3526 3.1 14.7 1.0
O3 B:SO3526 3.1 17.5 1.0
HE3 B:LYS188 3.2 17.0 1.0
O1 B:SO3526 3.2 16.8 1.0
HE2 B:LYS188 3.2 16.8 1.0
CHC B:HEC1004 3.4 13.8 1.0
CHA B:HEC1004 3.4 12.0 1.0
CHB B:HEC1004 3.4 13.1 1.0
CHD B:HEC1004 3.4 11.9 1.0
C2A B:HEC1004 4.2 12.1 1.0
C3A B:HEC1004 4.2 12.4 1.0
C2C B:HEC1004 4.3 13.1 1.0
C3B B:HEC1004 4.3 13.9 1.0
C3C B:HEC1004 4.3 12.6 1.0
C3D B:HEC1004 4.3 11.3 1.0
C2D B:HEC1004 4.3 11.9 1.0
C2B B:HEC1004 4.3 14.0 1.0
HHC B:HEC1004 4.3 13.1 1.0
HHA B:HEC1004 4.4 11.4 1.0
HHB B:HEC1004 4.4 13.2 1.0
HHD B:HEC1004 4.4 12.2 1.0
CD B:LYS188 4.4 15.5 1.0
HH21 B:ARG131 4.4 13.4 1.0
NE2 B:HIS361 4.4 12.8 1.0
HD3 B:LYS188 4.5 15.7 1.0
O B:HOH880 4.6 21.0 1.0
HD2 B:LYS188 4.7 15.9 1.0
OH B:TYR303 4.7 15.4 1.0
HH22 B:ARG131 4.8 13.7 1.0
HB2 B:CYS187 4.8 13.0 1.0
O B:HOH869 4.9 16.9 1.0
CMD B:HEC1006 4.9 12.4 1.0
NH2 B:ARG131 4.9 14.1 1.0
HD2 B:HIS361 5.0 12.4 1.0

Iron binding site 10 out of 16 in 3fo3

Go back to Iron Binding Sites List in 3fo3
Iron binding site 10 out of 16 in the Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase Reduced By Sodium Dithionite (Sulfite Complex)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase Reduced By Sodium Dithionite (Sulfite Complex) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe1005

b:12.2
occ:1.00
FE B:HEC1005 0.0 12.2 1.0
NA B:HEC1005 2.0 11.8 1.0
NE2 B:HIS231 2.0 12.4 1.0
NE2 B:HIS398 2.0 11.4 1.0
ND B:HEC1005 2.0 12.1 1.0
NB B:HEC1005 2.0 11.8 1.0
NC B:HEC1005 2.0 11.7 1.0
CE1 B:HIS231 3.0 12.9 1.0
CE1 B:HIS398 3.0 11.6 1.0
CD2 B:HIS398 3.0 11.8 1.0
C1C B:HEC1005 3.0 10.8 1.0
C1D B:HEC1005 3.0 11.4 1.0
CD2 B:HIS231 3.0 12.2 1.0
C1A B:HEC1005 3.0 12.2 1.0
C1B B:HEC1005 3.0 11.3 1.0
C4A B:HEC1005 3.0 12.1 1.0
C4B B:HEC1005 3.0 11.1 1.0
C4D B:HEC1005 3.0 12.5 1.0
C4C B:HEC1005 3.1 11.8 1.0
HE1 B:HIS231 3.2 13.0 1.0
HE1 B:HIS398 3.2 11.6 1.0
HD2 B:HIS398 3.2 11.8 1.0
HD2 B:HIS231 3.2 12.6 1.0
CHB B:HEC1005 3.4 12.4 1.0
CHC B:HEC1005 3.4 11.6 1.0
CHD B:HEC1005 3.4 11.9 1.0
CHA B:HEC1005 3.4 12.7 1.0
ND1 B:HIS231 4.1 12.7 1.0
ND1 B:HIS398 4.1 11.9 1.0
CG B:HIS398 4.1 11.9 1.0
CG B:HIS231 4.2 12.2 1.0
C2B B:HEC1005 4.2 12.0 1.0
C2C B:HEC1005 4.2 11.8 1.0
C3D B:HEC1005 4.2 12.6 1.0
C3A B:HEC1005 4.3 12.5 1.0
C2D B:HEC1005 4.3 12.4 1.0
C2A B:HEC1005 4.3 13.2 1.0
C3C B:HEC1005 4.3 11.2 1.0
C3B B:HEC1005 4.3 12.0 1.0
HHB B:HEC1005 4.3 12.1 1.0
HHC B:HEC1005 4.3 11.8 1.0
HHA B:HEC1005 4.4 12.9 1.0
HHD B:HEC1005 4.4 11.9 1.0
HG2 B:GLN73 4.4 13.4 1.0
HB3 B:GLN73 4.6 13.4 1.0
HB2 B:CYS230 4.8 12.5 1.0
CE B:MET384 4.8 14.6 1.0
HD1 B:HIS231 4.9 12.4 1.0
HD1 B:HIS398 4.9 11.7 1.0

Reference:

A.A.Trofimov, K.M.Polyakov, K.M.Boyko, T.V.Tikhonova, T.N.Safonova, A.V.Tikhonov, A.N.Popov, V.O.Popov. Structures of Complexes of Octahaem Cytochrome C Nitrite Reductase From Thioalkalivibrio Nitratireducens with Sulfite and Cyanide Acta Crystallogr.,Sect.D V. 66 1043 2010.
ISSN: ISSN 0907-4449
PubMed: 20944237
DOI: 10.1107/S0907444910031665
Page generated: Sun Dec 13 15:05:51 2020

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