Iron in PDB 3g0q: Crystal Structure of Muty Bound to Its Inhibitor Dna
Protein crystallography data
The structure of Crystal Structure of Muty Bound to Its Inhibitor Dna, PDB code: 3g0q
was solved by
S.Lee,
G.L.Verdine,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
50.00 /
2.20
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
37.700,
85.900,
142.100,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
24.6 /
27.7
|
Other elements in 3g0q:
The structure of Crystal Structure of Muty Bound to Its Inhibitor Dna also contains other interesting chemical elements:
Iron Binding Sites:
The binding sites of Iron atom in the Crystal Structure of Muty Bound to Its Inhibitor Dna
(pdb code 3g0q). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the
Crystal Structure of Muty Bound to Its Inhibitor Dna, PDB code: 3g0q:
Jump to Iron binding site number:
1;
2;
3;
4;
Iron binding site 1 out
of 4 in 3g0q
Go back to
Iron Binding Sites List in 3g0q
Iron binding site 1 out
of 4 in the Crystal Structure of Muty Bound to Its Inhibitor Dna
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Crystal Structure of Muty Bound to Its Inhibitor Dna within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe400
b:34.9
occ:1.00
|
FE1
|
A:SF4400
|
0.0
|
34.9
|
1.0
|
S2
|
A:SF4400
|
2.2
|
36.9
|
1.0
|
S3
|
A:SF4400
|
2.2
|
35.4
|
1.0
|
S4
|
A:SF4400
|
2.3
|
36.7
|
1.0
|
SG
|
A:CYS214
|
2.5
|
43.6
|
1.0
|
FE2
|
A:SF4400
|
2.6
|
35.9
|
1.0
|
FE4
|
A:SF4400
|
2.7
|
36.3
|
1.0
|
FE3
|
A:SF4400
|
2.7
|
36.2
|
1.0
|
CB
|
A:CYS214
|
3.1
|
45.1
|
1.0
|
S1
|
A:SF4400
|
3.8
|
37.5
|
1.0
|
CB
|
A:PHE217
|
4.5
|
44.4
|
1.0
|
CD2
|
A:LEU154
|
4.5
|
40.9
|
1.0
|
CA
|
A:CYS214
|
4.6
|
46.9
|
1.0
|
CB
|
A:ARG153
|
4.6
|
39.2
|
1.0
|
SG
|
A:CYS205
|
4.7
|
35.8
|
1.0
|
N
|
A:PHE217
|
4.8
|
44.3
|
1.0
|
SG
|
A:CYS208
|
4.8
|
42.1
|
1.0
|
SG
|
A:CYS198
|
4.9
|
36.6
|
1.0
|
|
Iron binding site 2 out
of 4 in 3g0q
Go back to
Iron Binding Sites List in 3g0q
Iron binding site 2 out
of 4 in the Crystal Structure of Muty Bound to Its Inhibitor Dna
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Crystal Structure of Muty Bound to Its Inhibitor Dna within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe400
b:35.9
occ:1.00
|
FE2
|
A:SF4400
|
0.0
|
35.9
|
1.0
|
S4
|
A:SF4400
|
2.1
|
36.7
|
1.0
|
S3
|
A:SF4400
|
2.2
|
35.4
|
1.0
|
S1
|
A:SF4400
|
2.3
|
37.5
|
1.0
|
SG
|
A:CYS198
|
2.5
|
36.6
|
1.0
|
FE3
|
A:SF4400
|
2.6
|
36.2
|
1.0
|
FE1
|
A:SF4400
|
2.6
|
34.9
|
1.0
|
FE4
|
A:SF4400
|
2.7
|
36.3
|
1.0
|
CB
|
A:CYS198
|
3.2
|
34.5
|
1.0
|
S2
|
A:SF4400
|
3.6
|
36.9
|
1.0
|
CA
|
A:CYS198
|
3.9
|
35.0
|
1.0
|
CD
|
A:ARG153
|
4.2
|
34.8
|
1.0
|
CB
|
A:ARG153
|
4.5
|
39.2
|
1.0
|
NH1
|
A:ARG153
|
4.7
|
31.9
|
1.0
|
SG
|
A:CYS208
|
4.7
|
42.1
|
1.0
|
CB
|
A:PRO203
|
4.7
|
47.0
|
1.0
|
SG
|
A:CYS205
|
4.7
|
35.8
|
1.0
|
N
|
A:CYS198
|
4.8
|
34.1
|
1.0
|
SG
|
A:CYS214
|
4.9
|
43.6
|
1.0
|
CG
|
A:ARG153
|
5.0
|
38.3
|
1.0
|
|
Iron binding site 3 out
of 4 in 3g0q
Go back to
Iron Binding Sites List in 3g0q
Iron binding site 3 out
of 4 in the Crystal Structure of Muty Bound to Its Inhibitor Dna
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Crystal Structure of Muty Bound to Its Inhibitor Dna within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe400
b:36.2
occ:1.00
|
FE3
|
A:SF4400
|
0.0
|
36.2
|
1.0
|
S2
|
A:SF4400
|
2.1
|
36.9
|
1.0
|
S1
|
A:SF4400
|
2.2
|
37.5
|
1.0
|
S4
|
A:SF4400
|
2.3
|
36.7
|
1.0
|
SG
|
A:CYS208
|
2.4
|
42.1
|
1.0
|
FE2
|
A:SF4400
|
2.6
|
35.9
|
1.0
|
FE4
|
A:SF4400
|
2.6
|
36.3
|
1.0
|
FE1
|
A:SF4400
|
2.7
|
34.9
|
1.0
|
CB
|
A:CYS208
|
3.0
|
40.2
|
1.0
|
S3
|
A:SF4400
|
3.7
|
35.4
|
1.0
|
CA
|
A:CYS205
|
4.4
|
38.1
|
1.0
|
CA
|
A:CYS208
|
4.4
|
42.9
|
1.0
|
CG2
|
A:VAL210
|
4.5
|
39.4
|
1.0
|
CA
|
A:GLN211
|
4.7
|
48.1
|
1.0
|
N
|
A:GLN211
|
4.7
|
43.8
|
1.0
|
SG
|
A:CYS205
|
4.8
|
35.8
|
1.0
|
CB
|
A:CYS198
|
4.8
|
34.5
|
1.0
|
SG
|
A:CYS198
|
4.8
|
36.6
|
1.0
|
CG1
|
A:VAL197
|
4.8
|
36.0
|
1.0
|
CB
|
A:CYS205
|
4.8
|
35.5
|
1.0
|
CB
|
A:CYS214
|
4.9
|
45.1
|
1.0
|
C
|
A:VAL210
|
4.9
|
43.8
|
1.0
|
|
Iron binding site 4 out
of 4 in 3g0q
Go back to
Iron Binding Sites List in 3g0q
Iron binding site 4 out
of 4 in the Crystal Structure of Muty Bound to Its Inhibitor Dna
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Crystal Structure of Muty Bound to Its Inhibitor Dna within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe400
b:36.3
occ:1.00
|
FE4
|
A:SF4400
|
0.0
|
36.3
|
1.0
|
S2
|
A:SF4400
|
2.1
|
36.9
|
1.0
|
S1
|
A:SF4400
|
2.2
|
37.5
|
1.0
|
S3
|
A:SF4400
|
2.2
|
35.4
|
1.0
|
SG
|
A:CYS205
|
2.3
|
35.8
|
1.0
|
FE3
|
A:SF4400
|
2.6
|
36.2
|
1.0
|
FE1
|
A:SF4400
|
2.7
|
34.9
|
1.0
|
FE2
|
A:SF4400
|
2.7
|
35.9
|
1.0
|
CB
|
A:CYS205
|
3.1
|
35.5
|
1.0
|
CA
|
A:CYS205
|
3.4
|
38.1
|
1.0
|
S4
|
A:SF4400
|
3.8
|
36.7
|
1.0
|
N
|
A:CYS205
|
4.0
|
37.5
|
1.0
|
CB
|
A:PRO203
|
4.4
|
47.0
|
1.0
|
CG
|
A:PRO203
|
4.4
|
49.9
|
1.0
|
CB
|
A:ALA222
|
4.5
|
45.8
|
1.0
|
CB
|
A:CYS208
|
4.6
|
40.2
|
1.0
|
C
|
A:CYS205
|
4.8
|
38.5
|
1.0
|
SG
|
A:CYS214
|
4.8
|
43.6
|
1.0
|
SG
|
A:CYS208
|
4.8
|
42.1
|
1.0
|
CB
|
A:PHE217
|
4.8
|
44.4
|
1.0
|
C
|
A:SER204
|
4.9
|
40.0
|
1.0
|
SG
|
A:CYS198
|
4.9
|
36.6
|
1.0
|
|
Reference:
S.Lee,
G.L.Verdine.
Atomic Substitution Reveals the Structural Basis For Substrate Adenine Recognition and Removal By Adenine Dna Glycosylase. Proc.Natl.Acad.Sci.Usa V. 106 18497 2009.
ISSN: ISSN 0027-8424
PubMed: 19841264
DOI: 10.1073/PNAS.0902908106
Page generated: Sun Aug 4 10:21:11 2024
|