Iron in PDB 3ge8: Toluene 4-Monooxygenase Hd T201A Diferric, Resting State Complex
Protein crystallography data
The structure of Toluene 4-Monooxygenase Hd T201A Diferric, Resting State Complex, PDB code: 3ge8
was solved by
N.L.Elsen,
L.J.Bailey,
A.D.Hauser,
B.G.Fox,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
47.17 /
2.19
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
100.288,
115.388,
180.927,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
16.1 /
22.9
|
Iron Binding Sites:
The binding sites of Iron atom in the Toluene 4-Monooxygenase Hd T201A Diferric, Resting State Complex
(pdb code 3ge8). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the
Toluene 4-Monooxygenase Hd T201A Diferric, Resting State Complex, PDB code: 3ge8:
Jump to Iron binding site number:
1;
2;
3;
4;
Iron binding site 1 out
of 4 in 3ge8
Go back to
Iron Binding Sites List in 3ge8
Iron binding site 1 out
of 4 in the Toluene 4-Monooxygenase Hd T201A Diferric, Resting State Complex
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Toluene 4-Monooxygenase Hd T201A Diferric, Resting State Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe501
b:8.5
occ:1.00
|
OE2
|
A:GLU104
|
2.0
|
9.9
|
1.0
|
O
|
A:HOH637
|
2.0
|
16.0
|
1.0
|
OE1
|
A:GLU134
|
2.0
|
4.7
|
1.0
|
OXT
|
A:ACT1428
|
2.1
|
14.6
|
1.0
|
O
|
A:HOH505
|
2.2
|
9.8
|
1.0
|
ND1
|
A:HIS137
|
2.4
|
2.0
|
1.0
|
CD
|
A:GLU134
|
3.0
|
10.3
|
1.0
|
CD
|
A:GLU104
|
3.1
|
12.2
|
1.0
|
CE1
|
A:HIS137
|
3.2
|
3.1
|
1.0
|
C
|
A:ACT1428
|
3.3
|
16.6
|
1.0
|
FE
|
A:FE502
|
3.3
|
12.2
|
1.0
|
OE2
|
A:GLU134
|
3.3
|
10.8
|
1.0
|
CG
|
A:HIS137
|
3.4
|
5.5
|
1.0
|
OE1
|
A:GLU104
|
3.5
|
11.8
|
1.0
|
O
|
A:ACT1428
|
3.6
|
17.5
|
1.0
|
CB
|
A:HIS137
|
3.8
|
6.0
|
1.0
|
OE2
|
A:GLU231
|
3.9
|
29.5
|
1.0
|
O
|
A:HOH638
|
4.2
|
32.6
|
1.0
|
CG
|
A:GLU104
|
4.4
|
9.6
|
1.0
|
NE2
|
A:HIS137
|
4.4
|
2.8
|
1.0
|
CG
|
A:GLU134
|
4.5
|
6.5
|
1.0
|
CD
|
A:GLU231
|
4.5
|
30.3
|
1.0
|
CD2
|
A:HIS137
|
4.5
|
2.0
|
1.0
|
CH3
|
A:ACT1428
|
4.5
|
16.5
|
1.0
|
OE1
|
A:GLU231
|
4.6
|
32.8
|
1.0
|
CB
|
A:GLU104
|
4.6
|
5.4
|
1.0
|
CE1
|
A:HIS234
|
4.7
|
11.1
|
1.0
|
CA
|
A:GLU134
|
4.7
|
5.8
|
1.0
|
NE2
|
A:HIS234
|
4.7
|
7.8
|
1.0
|
CG2
|
A:ILE227
|
4.8
|
3.6
|
1.0
|
CB
|
A:GLU134
|
4.9
|
5.2
|
1.0
|
CA
|
A:GLU104
|
4.9
|
8.1
|
1.0
|
|
Iron binding site 2 out
of 4 in 3ge8
Go back to
Iron Binding Sites List in 3ge8
Iron binding site 2 out
of 4 in the Toluene 4-Monooxygenase Hd T201A Diferric, Resting State Complex
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Toluene 4-Monooxygenase Hd T201A Diferric, Resting State Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe502
b:12.2
occ:1.00
|
OE2
|
A:GLU231
|
1.8
|
29.5
|
1.0
|
O
|
A:HOH505
|
2.0
|
9.8
|
1.0
|
OE2
|
A:GLU134
|
2.0
|
10.8
|
1.0
|
OE2
|
A:GLU197
|
2.0
|
15.0
|
1.0
|
O
|
A:ACT1428
|
2.2
|
17.5
|
1.0
|
NE2
|
A:HIS234
|
2.3
|
7.8
|
1.0
|
CD
|
A:GLU134
|
3.0
|
10.3
|
1.0
|
CD
|
A:GLU197
|
3.1
|
15.1
|
1.0
|
OXT
|
A:ACT1428
|
3.1
|
14.6
|
1.0
|
C
|
A:ACT1428
|
3.1
|
16.6
|
1.0
|
CD
|
A:GLU231
|
3.1
|
30.3
|
1.0
|
CE1
|
A:HIS234
|
3.1
|
11.1
|
1.0
|
O
|
A:HOH506
|
3.2
|
31.3
|
1.0
|
FE
|
A:FE501
|
3.3
|
8.5
|
1.0
|
CD2
|
A:HIS234
|
3.3
|
7.8
|
1.0
|
OE1
|
A:GLU134
|
3.4
|
4.7
|
1.0
|
CG
|
A:GLU197
|
3.7
|
13.7
|
1.0
|
OE1
|
A:GLU231
|
3.9
|
32.8
|
1.0
|
OE1
|
A:GLU197
|
4.0
|
21.2
|
1.0
|
CG
|
A:GLU231
|
4.1
|
19.9
|
1.0
|
ND1
|
A:HIS234
|
4.3
|
8.5
|
1.0
|
CG
|
A:GLU134
|
4.4
|
6.5
|
1.0
|
CG
|
A:HIS234
|
4.4
|
5.3
|
1.0
|
O
|
A:HOH637
|
4.4
|
16.0
|
1.0
|
CH3
|
A:ACT1428
|
4.5
|
16.5
|
1.0
|
CB
|
A:GLU231
|
4.6
|
12.8
|
1.0
|
ND1
|
A:HIS137
|
4.8
|
2.0
|
1.0
|
CB
|
A:GLU197
|
4.8
|
12.3
|
1.0
|
CA
|
A:GLU231
|
4.8
|
11.9
|
1.0
|
CE1
|
A:HIS137
|
4.9
|
3.1
|
1.0
|
OE2
|
A:GLU111
|
4.9
|
15.1
|
1.0
|
|
Iron binding site 3 out
of 4 in 3ge8
Go back to
Iron Binding Sites List in 3ge8
Iron binding site 3 out
of 4 in the Toluene 4-Monooxygenase Hd T201A Diferric, Resting State Complex
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Toluene 4-Monooxygenase Hd T201A Diferric, Resting State Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe501
b:13.7
occ:1.00
|
OE1
|
D:GLU231
|
1.8
|
24.3
|
1.0
|
O
|
D:HOH628
|
1.9
|
8.8
|
1.0
|
OE2
|
D:GLU134
|
2.0
|
10.5
|
1.0
|
OE2
|
D:GLU197
|
2.2
|
15.6
|
1.0
|
O
|
D:ACT1428
|
2.2
|
14.4
|
1.0
|
NE2
|
D:HIS234
|
2.3
|
7.7
|
1.0
|
CD
|
D:GLU231
|
3.0
|
28.5
|
1.0
|
CD
|
D:GLU134
|
3.1
|
9.3
|
1.0
|
O
|
D:HOH630
|
3.1
|
32.4
|
1.0
|
C
|
D:ACT1428
|
3.1
|
15.3
|
1.0
|
CE1
|
D:HIS234
|
3.1
|
7.8
|
1.0
|
OXT
|
D:ACT1428
|
3.2
|
13.5
|
1.0
|
CD
|
D:GLU197
|
3.2
|
18.4
|
1.0
|
FE
|
D:FE502
|
3.3
|
8.4
|
1.0
|
CD2
|
D:HIS234
|
3.3
|
7.1
|
1.0
|
OE1
|
D:GLU134
|
3.5
|
10.0
|
1.0
|
CG
|
D:GLU197
|
3.7
|
12.3
|
1.0
|
OE2
|
D:GLU231
|
3.8
|
31.4
|
1.0
|
CG
|
D:GLU231
|
4.1
|
22.4
|
1.0
|
OE1
|
D:GLU197
|
4.3
|
22.6
|
1.0
|
ND1
|
D:HIS234
|
4.3
|
4.9
|
1.0
|
O
|
D:HOH629
|
4.4
|
17.5
|
1.0
|
CG
|
D:GLU134
|
4.4
|
5.6
|
1.0
|
CG
|
D:HIS234
|
4.4
|
5.5
|
1.0
|
CH3
|
D:ACT1428
|
4.5
|
13.9
|
1.0
|
CB
|
D:GLU231
|
4.6
|
14.9
|
1.0
|
CA
|
D:GLU231
|
4.8
|
13.5
|
1.0
|
CB
|
D:GLU197
|
4.8
|
10.7
|
1.0
|
ND1
|
D:HIS137
|
4.8
|
2.0
|
1.0
|
O
|
D:HOH631
|
4.8
|
36.6
|
1.0
|
CE1
|
D:HIS137
|
4.9
|
2.6
|
1.0
|
OE2
|
D:GLU111
|
4.9
|
18.7
|
1.0
|
|
Iron binding site 4 out
of 4 in 3ge8
Go back to
Iron Binding Sites List in 3ge8
Iron binding site 4 out
of 4 in the Toluene 4-Monooxygenase Hd T201A Diferric, Resting State Complex
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Toluene 4-Monooxygenase Hd T201A Diferric, Resting State Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe502
b:8.4
occ:1.00
|
O
|
D:HOH629
|
1.9
|
17.5
|
1.0
|
OE2
|
D:GLU104
|
2.1
|
10.9
|
1.0
|
OXT
|
D:ACT1428
|
2.1
|
13.5
|
1.0
|
OE1
|
D:GLU134
|
2.1
|
10.0
|
1.0
|
O
|
D:HOH628
|
2.2
|
8.8
|
1.0
|
ND1
|
D:HIS137
|
2.3
|
2.0
|
1.0
|
CD
|
D:GLU134
|
3.1
|
9.3
|
1.0
|
CD
|
D:GLU104
|
3.1
|
10.9
|
1.0
|
CE1
|
D:HIS137
|
3.2
|
2.6
|
1.0
|
C
|
D:ACT1428
|
3.3
|
15.3
|
1.0
|
FE
|
D:FE501
|
3.3
|
13.7
|
1.0
|
OE2
|
D:GLU134
|
3.3
|
10.5
|
1.0
|
CG
|
D:HIS137
|
3.4
|
4.8
|
1.0
|
OE1
|
D:GLU104
|
3.6
|
11.2
|
1.0
|
O
|
D:ACT1428
|
3.7
|
14.4
|
1.0
|
CB
|
D:HIS137
|
3.8
|
2.8
|
1.0
|
O
|
D:HOH631
|
4.0
|
36.6
|
1.0
|
OE1
|
D:GLU231
|
4.2
|
24.3
|
1.0
|
NE2
|
D:HIS137
|
4.4
|
2.0
|
1.0
|
CG
|
D:GLU104
|
4.4
|
8.6
|
1.0
|
CG
|
D:GLU134
|
4.5
|
5.6
|
1.0
|
CD2
|
D:HIS137
|
4.5
|
2.0
|
1.0
|
CH3
|
D:ACT1428
|
4.6
|
13.9
|
1.0
|
CD
|
D:GLU231
|
4.6
|
28.5
|
1.0
|
OE2
|
D:GLU231
|
4.6
|
31.4
|
1.0
|
CB
|
D:GLU104
|
4.6
|
9.2
|
1.0
|
CE1
|
D:HIS234
|
4.7
|
7.8
|
1.0
|
CA
|
D:GLU134
|
4.7
|
5.2
|
1.0
|
CG2
|
D:ILE227
|
4.7
|
3.4
|
1.0
|
NE2
|
D:HIS234
|
4.7
|
7.7
|
1.0
|
CB
|
D:GLU134
|
4.9
|
6.2
|
1.0
|
CA
|
D:GLU104
|
5.0
|
9.0
|
1.0
|
|
Reference:
N.L.Elsen,
L.J.Bailey,
A.D.Hauser,
B.G.Fox.
Role For Threonine 201 in the Catalytic Cycle of the Soluble Diiron Hydroxylase Toluene 4-Monooxygenase. Biochemistry V. 48 3838 2009.
ISSN: ISSN 0006-2960
PubMed: 19290655
DOI: 10.1021/BI900144A
Page generated: Sun Aug 4 10:42:01 2024
|