Iron in PDB 3ghq: Crystal Structure of E. Coli W35F Bfr Mutant
Protein crystallography data
The structure of Crystal Structure of E. Coli W35F Bfr Mutant, PDB code: 3ghq
was solved by
A.Crow,
T.L.Lawson,
A.Lewin,
G.R.Moore,
N.E.Le Brun,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
34.61 /
2.70
|
|
Space group
|
P 42 21 2
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
207.641,
207.641,
142.430,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
24.3 /
26.2
|
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
18;
Binding sites:
The binding sites of Iron atom in the Crystal Structure of E. Coli W35F Bfr Mutant
(pdb code 3ghq). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 18 binding sites of Iron where determined in the
Crystal Structure of E. Coli W35F Bfr Mutant, PDB code: 3ghq:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 18 in 3ghq
Go back to
Iron Binding Sites List in 3ghq
Iron binding site 1 out
of 18 in the Crystal Structure of E. Coli W35F Bfr Mutant
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Crystal Structure of E. Coli W35F Bfr Mutant within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe300
b:37.5
occ:1.00
|
OE1
|
A:GLU127
|
2.0
|
18.8
|
1.0
|
|
OE1
|
A:GLU18
|
2.0
|
18.2
|
1.0
|
|
OE2
|
A:GLU51
|
2.3
|
20.5
|
1.0
|
|
ND1
|
A:HIS54
|
2.4
|
12.1
|
1.0
|
|
OE2
|
A:GLU18
|
2.5
|
18.4
|
1.0
|
|
CD
|
A:GLU18
|
2.6
|
17.0
|
1.0
|
|
CD
|
A:GLU51
|
2.8
|
17.8
|
1.0
|
|
OE1
|
A:GLU51
|
2.9
|
21.3
|
1.0
|
|
CD
|
A:GLU127
|
3.0
|
16.0
|
1.0
|
|
CE1
|
A:HIS54
|
3.3
|
13.3
|
1.0
|
|
CG
|
A:HIS54
|
3.4
|
10.9
|
1.0
|
|
OE2
|
A:GLU127
|
3.4
|
16.2
|
1.0
|
|
CB
|
A:HIS54
|
3.6
|
9.7
|
1.0
|
|
CG
|
A:GLU51
|
4.0
|
12.9
|
1.0
|
|
CG
|
A:GLU18
|
4.0
|
14.0
|
1.0
|
|
CA
|
A:GLU51
|
4.1
|
11.2
|
1.0
|
|
CB
|
A:GLU51
|
4.2
|
11.8
|
1.0
|
|
O
|
A:HOH384
|
4.3
|
4.6
|
1.0
|
|
CG
|
A:GLU127
|
4.3
|
14.2
|
1.0
|
|
CG2
|
A:ILE123
|
4.4
|
7.8
|
1.0
|
|
NE2
|
A:HIS54
|
4.4
|
10.5
|
1.0
|
|
CD2
|
A:HIS54
|
4.5
|
10.9
|
1.0
|
|
CB
|
A:GLU18
|
4.7
|
12.4
|
1.0
|
|
O
|
A:HOH383
|
4.9
|
2.6
|
1.0
|
|
O
|
A:GLU51
|
4.9
|
10.0
|
1.0
|
|
CA
|
A:GLU18
|
5.0
|
12.3
|
1.0
|
|
CE1
|
A:HIS130
|
5.0
|
20.0
|
1.0
|
|
Iron binding site 2 out
of 18 in 3ghq
Go back to
Iron Binding Sites List in 3ghq
Iron binding site 2 out
of 18 in the Crystal Structure of E. Coli W35F Bfr Mutant
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Crystal Structure of E. Coli W35F Bfr Mutant within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe200
b:20.4
occ:0.30
|
FE
|
A:HEM200
|
0.0
|
20.4
|
0.3
|
|
NC
|
A:HEM200
|
2.1
|
19.4
|
0.3
|
|
NB
|
A:HEM200
|
2.1
|
19.4
|
0.3
|
|
ND
|
A:HEM200
|
2.2
|
20.1
|
0.3
|
|
NA
|
A:HEM200
|
2.2
|
20.0
|
0.3
|
|
SD
|
B:MET52
|
2.3
|
12.2
|
1.0
|
|
SD
|
A:MET52
|
2.3
|
12.2
|
1.0
|
|
C4C
|
A:HEM200
|
3.1
|
19.3
|
0.3
|
|
CE
|
A:MET52
|
3.1
|
13.0
|
1.0
|
|
CE
|
B:MET52
|
3.1
|
13.0
|
1.0
|
|
C1C
|
A:HEM200
|
3.1
|
18.4
|
0.3
|
|
C1D
|
A:HEM200
|
3.1
|
20.1
|
0.3
|
|
C4B
|
A:HEM200
|
3.1
|
18.3
|
0.3
|
|
C1B
|
A:HEM200
|
3.1
|
19.4
|
0.3
|
|
C4A
|
A:HEM200
|
3.2
|
19.7
|
0.3
|
|
C4D
|
A:HEM200
|
3.2
|
20.2
|
0.3
|
|
C1A
|
A:HEM200
|
3.2
|
20.0
|
0.3
|
|
CHD
|
A:HEM200
|
3.4
|
19.7
|
0.3
|
|
CHC
|
A:HEM200
|
3.5
|
18.2
|
0.3
|
|
CG
|
B:MET52
|
3.5
|
11.3
|
1.0
|
|
CG
|
A:MET52
|
3.5
|
11.3
|
1.0
|
|
CHB
|
A:HEM200
|
3.5
|
19.4
|
0.3
|
|
CHA
|
A:HEM200
|
3.6
|
19.8
|
0.3
|
|
C3C
|
A:HEM200
|
4.3
|
17.7
|
0.3
|
|
C2C
|
A:HEM200
|
4.3
|
17.6
|
0.3
|
|
CB
|
B:MET52
|
4.3
|
10.8
|
1.0
|
|
C3B
|
A:HEM200
|
4.3
|
17.9
|
0.3
|
|
C2B
|
A:HEM200
|
4.4
|
18.2
|
0.3
|
|
CB
|
A:MET52
|
4.4
|
10.8
|
1.0
|
|
C2D
|
A:HEM200
|
4.4
|
19.5
|
0.3
|
|
C3D
|
A:HEM200
|
4.4
|
19.7
|
0.3
|
|
C3A
|
A:HEM200
|
4.4
|
19.3
|
0.3
|
|
C2A
|
A:HEM200
|
4.4
|
19.7
|
0.3
|
|
Iron binding site 3 out
of 18 in 3ghq
Go back to
Iron Binding Sites List in 3ghq
Iron binding site 3 out
of 18 in the Crystal Structure of E. Coli W35F Bfr Mutant
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Crystal Structure of E. Coli W35F Bfr Mutant within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe300
b:37.5
occ:1.00
|
OE1
|
B:GLU18
|
2.0
|
18.2
|
1.0
|
|
OE1
|
B:GLU127
|
2.0
|
18.8
|
1.0
|
|
OE2
|
B:GLU51
|
2.4
|
20.5
|
1.0
|
|
ND1
|
B:HIS54
|
2.4
|
12.1
|
1.0
|
|
OE2
|
B:GLU18
|
2.5
|
18.4
|
1.0
|
|
CD
|
B:GLU18
|
2.5
|
17.0
|
1.0
|
|
CD
|
B:GLU51
|
2.8
|
17.8
|
1.0
|
|
OE1
|
B:GLU51
|
2.9
|
21.3
|
1.0
|
|
CD
|
B:GLU127
|
3.0
|
16.1
|
1.0
|
|
CE1
|
B:HIS54
|
3.3
|
13.2
|
1.0
|
|
CG
|
B:HIS54
|
3.4
|
10.9
|
1.0
|
|
OE2
|
B:GLU127
|
3.4
|
16.3
|
1.0
|
|
CB
|
B:HIS54
|
3.7
|
9.7
|
1.0
|
|
CG
|
B:GLU51
|
4.0
|
12.9
|
1.0
|
|
CG
|
B:GLU18
|
4.0
|
14.0
|
1.0
|
|
CA
|
B:GLU51
|
4.2
|
11.2
|
1.0
|
|
CB
|
B:GLU51
|
4.2
|
11.8
|
1.0
|
|
CG
|
B:GLU127
|
4.3
|
14.1
|
1.0
|
|
CG2
|
B:ILE123
|
4.4
|
7.8
|
1.0
|
|
O
|
B:HOH477
|
4.4
|
7.6
|
1.0
|
|
NE2
|
B:HIS54
|
4.4
|
10.5
|
1.0
|
|
CD2
|
B:HIS54
|
4.5
|
10.9
|
1.0
|
|
CB
|
B:GLU18
|
4.7
|
12.4
|
1.0
|
|
CA
|
B:GLU18
|
4.9
|
12.3
|
1.0
|
|
O
|
B:GLU51
|
4.9
|
10.0
|
1.0
|
|
Iron binding site 4 out
of 18 in 3ghq
Go back to
Iron Binding Sites List in 3ghq
Iron binding site 4 out
of 18 in the Crystal Structure of E. Coli W35F Bfr Mutant
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Crystal Structure of E. Coli W35F Bfr Mutant within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe300
b:37.5
occ:1.00
|
OE1
|
C:GLU127
|
1.9
|
18.8
|
1.0
|
|
OE1
|
C:GLU18
|
2.0
|
18.2
|
1.0
|
|
OE2
|
C:GLU51
|
2.4
|
20.5
|
1.0
|
|
ND1
|
C:HIS54
|
2.4
|
12.1
|
1.0
|
|
OE2
|
C:GLU18
|
2.5
|
18.4
|
1.0
|
|
CD
|
C:GLU18
|
2.6
|
17.0
|
1.0
|
|
CD
|
C:GLU51
|
2.8
|
17.8
|
1.0
|
|
OE1
|
C:GLU51
|
2.9
|
21.4
|
1.0
|
|
CD
|
C:GLU127
|
3.0
|
16.0
|
1.0
|
|
CE1
|
C:HIS54
|
3.3
|
13.2
|
1.0
|
|
OE2
|
C:GLU127
|
3.4
|
16.2
|
1.0
|
|
CG
|
C:HIS54
|
3.4
|
10.9
|
1.0
|
|
CB
|
C:HIS54
|
3.7
|
9.7
|
1.0
|
|
CG
|
C:GLU51
|
4.0
|
12.9
|
1.0
|
|
CG
|
C:GLU18
|
4.0
|
14.0
|
1.0
|
|
CA
|
C:GLU51
|
4.2
|
11.2
|
1.0
|
|
CG
|
C:GLU127
|
4.2
|
14.2
|
1.0
|
|
CB
|
C:GLU51
|
4.3
|
11.8
|
1.0
|
|
CG2
|
C:ILE123
|
4.4
|
7.7
|
1.0
|
|
NE2
|
C:HIS54
|
4.5
|
10.5
|
1.0
|
|
CD2
|
C:HIS54
|
4.5
|
10.9
|
1.0
|
|
O
|
C:HOH326
|
4.6
|
2.2
|
1.0
|
|
CB
|
C:GLU18
|
4.7
|
12.4
|
1.0
|
|
CA
|
C:GLU18
|
4.9
|
12.3
|
1.0
|
|
O
|
C:GLU51
|
5.0
|
10.0
|
1.0
|
|
Iron binding site 5 out
of 18 in 3ghq
Go back to
Iron Binding Sites List in 3ghq
Iron binding site 5 out
of 18 in the Crystal Structure of E. Coli W35F Bfr Mutant
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Crystal Structure of E. Coli W35F Bfr Mutant within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe200
b:20.4
occ:0.30
|
FE
|
D:HEM200
|
0.0
|
20.4
|
0.3
|
|
NB
|
D:HEM200
|
2.1
|
19.4
|
0.3
|
|
NC
|
D:HEM200
|
2.1
|
19.4
|
0.3
|
|
NA
|
D:HEM200
|
2.2
|
20.0
|
0.3
|
|
ND
|
D:HEM200
|
2.2
|
20.1
|
0.3
|
|
SD
|
D:MET52
|
2.2
|
12.2
|
1.0
|
|
SD
|
C:MET52
|
2.3
|
12.2
|
1.0
|
|
CE
|
C:MET52
|
3.0
|
13.0
|
1.0
|
|
CE
|
D:MET52
|
3.1
|
13.0
|
1.0
|
|
C4C
|
D:HEM200
|
3.1
|
19.3
|
0.3
|
|
C1B
|
D:HEM200
|
3.1
|
19.4
|
0.3
|
|
C4B
|
D:HEM200
|
3.1
|
18.3
|
0.3
|
|
C1C
|
D:HEM200
|
3.1
|
18.4
|
0.3
|
|
C1D
|
D:HEM200
|
3.1
|
20.1
|
0.3
|
|
C4A
|
D:HEM200
|
3.2
|
19.7
|
0.3
|
|
C1A
|
D:HEM200
|
3.2
|
20.0
|
0.3
|
|
C4D
|
D:HEM200
|
3.2
|
20.2
|
0.3
|
|
CG
|
D:MET52
|
3.4
|
11.3
|
1.0
|
|
CHD
|
D:HEM200
|
3.4
|
19.7
|
0.3
|
|
CHB
|
D:HEM200
|
3.5
|
19.4
|
0.3
|
|
CHC
|
D:HEM200
|
3.5
|
18.2
|
0.3
|
|
CHA
|
D:HEM200
|
3.6
|
19.8
|
0.3
|
|
CG
|
C:MET52
|
3.6
|
11.3
|
1.0
|
|
CB
|
D:MET52
|
4.2
|
10.8
|
1.0
|
|
C3C
|
D:HEM200
|
4.3
|
17.7
|
0.3
|
|
C2C
|
D:HEM200
|
4.3
|
17.6
|
0.3
|
|
C3B
|
D:HEM200
|
4.3
|
17.9
|
0.3
|
|
C2B
|
D:HEM200
|
4.3
|
18.2
|
0.3
|
|
C3A
|
D:HEM200
|
4.4
|
19.3
|
0.3
|
|
C2D
|
D:HEM200
|
4.4
|
19.5
|
0.3
|
|
C2A
|
D:HEM200
|
4.4
|
19.7
|
0.3
|
|
C3D
|
D:HEM200
|
4.4
|
19.8
|
0.3
|
|
CB
|
C:MET52
|
4.5
|
10.8
|
1.0
|
|
Iron binding site 6 out
of 18 in 3ghq
Go back to
Iron Binding Sites List in 3ghq
Iron binding site 6 out
of 18 in the Crystal Structure of E. Coli W35F Bfr Mutant
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Crystal Structure of E. Coli W35F Bfr Mutant within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe300
b:37.5
occ:1.00
|
OE1
|
D:GLU18
|
2.0
|
18.2
|
1.0
|
|
OE1
|
D:GLU127
|
2.0
|
18.8
|
1.0
|
|
OE2
|
D:GLU51
|
2.3
|
20.5
|
1.0
|
|
ND1
|
D:HIS54
|
2.3
|
12.2
|
1.0
|
|
OE2
|
D:GLU18
|
2.5
|
18.5
|
1.0
|
|
CD
|
D:GLU18
|
2.6
|
17.0
|
1.0
|
|
CD
|
D:GLU51
|
2.8
|
17.8
|
1.0
|
|
OE1
|
D:GLU51
|
2.9
|
21.3
|
1.0
|
|
CD
|
D:GLU127
|
3.0
|
16.1
|
1.0
|
|
CE1
|
D:HIS54
|
3.3
|
13.3
|
1.0
|
|
CG
|
D:HIS54
|
3.3
|
10.9
|
1.0
|
|
OE2
|
D:GLU127
|
3.4
|
16.3
|
1.0
|
|
CB
|
D:HIS54
|
3.6
|
9.7
|
1.0
|
|
CG
|
D:GLU51
|
4.0
|
12.9
|
1.0
|
|
CG
|
D:GLU18
|
4.0
|
14.0
|
1.0
|
|
CA
|
D:GLU51
|
4.1
|
11.2
|
1.0
|
|
CB
|
D:GLU51
|
4.2
|
11.8
|
1.0
|
|
CG
|
D:GLU127
|
4.3
|
14.1
|
1.0
|
|
CG2
|
D:ILE123
|
4.4
|
7.8
|
1.0
|
|
O
|
D:HOH165
|
4.4
|
2.0
|
1.0
|
|
NE2
|
D:HIS54
|
4.4
|
10.6
|
1.0
|
|
CD2
|
D:HIS54
|
4.5
|
10.9
|
1.0
|
|
CB
|
D:GLU18
|
4.7
|
12.4
|
1.0
|
|
O
|
D:GLU51
|
4.9
|
9.9
|
1.0
|
|
CA
|
D:GLU18
|
5.0
|
12.3
|
1.0
|
|
N
|
D:GLU51
|
5.0
|
11.2
|
1.0
|
|
Iron binding site 7 out
of 18 in 3ghq
Go back to
Iron Binding Sites List in 3ghq
Iron binding site 7 out
of 18 in the Crystal Structure of E. Coli W35F Bfr Mutant
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Crystal Structure of E. Coli W35F Bfr Mutant within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe300
b:37.5
occ:1.00
|
OE1
|
E:GLU127
|
2.0
|
18.8
|
1.0
|
|
OE1
|
E:GLU18
|
2.0
|
18.2
|
1.0
|
|
OE2
|
E:GLU51
|
2.3
|
20.5
|
1.0
|
|
ND1
|
E:HIS54
|
2.4
|
12.2
|
1.0
|
|
OE2
|
E:GLU18
|
2.5
|
18.4
|
1.0
|
|
CD
|
E:GLU18
|
2.5
|
16.9
|
1.0
|
|
CD
|
E:GLU51
|
2.8
|
17.8
|
1.0
|
|
OE1
|
E:GLU51
|
2.9
|
21.3
|
1.0
|
|
CD
|
E:GLU127
|
3.0
|
16.0
|
1.0
|
|
CE1
|
E:HIS54
|
3.3
|
13.2
|
1.0
|
|
CG
|
E:HIS54
|
3.4
|
10.8
|
1.0
|
|
OE2
|
E:GLU127
|
3.4
|
16.3
|
1.0
|
|
CB
|
E:HIS54
|
3.7
|
9.7
|
1.0
|
|
CG
|
E:GLU18
|
4.0
|
14.0
|
1.0
|
|
CG
|
E:GLU51
|
4.0
|
12.9
|
1.0
|
|
CA
|
E:GLU51
|
4.2
|
11.2
|
1.0
|
|
CB
|
E:GLU51
|
4.2
|
11.8
|
1.0
|
|
CG
|
E:GLU127
|
4.3
|
14.1
|
1.0
|
|
CG2
|
E:ILE123
|
4.4
|
7.8
|
1.0
|
|
NE2
|
E:HIS54
|
4.4
|
10.5
|
1.0
|
|
CD2
|
E:HIS54
|
4.5
|
10.9
|
1.0
|
|
O
|
E:HOH492
|
4.6
|
11.6
|
1.0
|
|
CB
|
E:GLU18
|
4.7
|
12.4
|
1.0
|
|
CA
|
E:GLU18
|
4.9
|
12.3
|
1.0
|
|
O
|
E:GLU51
|
4.9
|
10.0
|
1.0
|
|
Iron binding site 8 out
of 18 in 3ghq
Go back to
Iron Binding Sites List in 3ghq
Iron binding site 8 out
of 18 in the Crystal Structure of E. Coli W35F Bfr Mutant
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Crystal Structure of E. Coli W35F Bfr Mutant within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Fe200
b:20.3
occ:0.30
|
FE
|
F:HEM200
|
0.0
|
20.3
|
0.3
|
|
NC
|
F:HEM200
|
2.1
|
19.4
|
0.3
|
|
NB
|
F:HEM200
|
2.1
|
19.4
|
0.3
|
|
ND
|
F:HEM200
|
2.2
|
20.1
|
0.3
|
|
NA
|
F:HEM200
|
2.2
|
20.0
|
0.3
|
|
SD
|
E:MET52
|
2.2
|
12.2
|
1.0
|
|
SD
|
F:MET52
|
2.2
|
12.3
|
1.0
|
|
CE
|
F:MET52
|
3.0
|
13.0
|
1.0
|
|
C4C
|
F:HEM200
|
3.1
|
19.3
|
0.3
|
|
CE
|
E:MET52
|
3.1
|
13.0
|
1.0
|
|
C1C
|
F:HEM200
|
3.1
|
18.4
|
0.3
|
|
C1D
|
F:HEM200
|
3.1
|
20.1
|
0.3
|
|
C4B
|
F:HEM200
|
3.1
|
18.3
|
0.3
|
|
C1B
|
F:HEM200
|
3.2
|
19.4
|
0.3
|
|
C4A
|
F:HEM200
|
3.2
|
19.7
|
0.3
|
|
C4D
|
F:HEM200
|
3.2
|
20.2
|
0.3
|
|
C1A
|
F:HEM200
|
3.2
|
20.0
|
0.3
|
|
CHD
|
F:HEM200
|
3.4
|
19.7
|
0.3
|
|
CHC
|
F:HEM200
|
3.5
|
18.2
|
0.3
|
|
CG
|
F:MET52
|
3.5
|
11.3
|
1.0
|
|
CG
|
E:MET52
|
3.5
|
11.3
|
1.0
|
|
CHB
|
F:HEM200
|
3.5
|
19.4
|
0.3
|
|
CHA
|
F:HEM200
|
3.6
|
19.8
|
0.3
|
|
C3C
|
F:HEM200
|
4.3
|
17.7
|
0.3
|
|
C2C
|
F:HEM200
|
4.3
|
17.6
|
0.3
|
|
CB
|
E:MET52
|
4.3
|
10.8
|
1.0
|
|
CB
|
F:MET52
|
4.3
|
10.8
|
1.0
|
|
C3B
|
F:HEM200
|
4.3
|
17.9
|
0.3
|
|
C2D
|
F:HEM200
|
4.4
|
19.5
|
0.3
|
|
C2B
|
F:HEM200
|
4.4
|
18.2
|
0.3
|
|
C3D
|
F:HEM200
|
4.4
|
19.8
|
0.3
|
|
C3A
|
F:HEM200
|
4.4
|
19.3
|
0.3
|
|
C2A
|
F:HEM200
|
4.4
|
19.7
|
0.3
|
|
Iron binding site 9 out
of 18 in 3ghq
Go back to
Iron Binding Sites List in 3ghq
Iron binding site 9 out
of 18 in the Crystal Structure of E. Coli W35F Bfr Mutant
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Crystal Structure of E. Coli W35F Bfr Mutant within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Fe300
b:37.6
occ:1.00
|
OE1
|
F:GLU18
|
2.0
|
18.2
|
1.0
|
|
OE1
|
F:GLU127
|
2.0
|
18.8
|
1.0
|
|
OE2
|
F:GLU51
|
2.3
|
20.5
|
1.0
|
|
ND1
|
F:HIS54
|
2.4
|
12.1
|
1.0
|
|
OE2
|
F:GLU18
|
2.5
|
18.4
|
1.0
|
|
CD
|
F:GLU18
|
2.5
|
16.9
|
1.0
|
|
CD
|
F:GLU51
|
2.8
|
17.8
|
1.0
|
|
OE1
|
F:GLU51
|
2.9
|
21.3
|
1.0
|
|
CD
|
F:GLU127
|
3.0
|
16.0
|
1.0
|
|
CE1
|
F:HIS54
|
3.3
|
13.3
|
1.0
|
|
CG
|
F:HIS54
|
3.4
|
10.9
|
1.0
|
|
OE2
|
F:GLU127
|
3.4
|
16.2
|
1.0
|
|
CB
|
F:HIS54
|
3.6
|
9.7
|
1.0
|
|
CG
|
F:GLU18
|
4.0
|
14.0
|
1.0
|
|
CG
|
F:GLU51
|
4.0
|
12.9
|
1.0
|
|
CA
|
F:GLU51
|
4.1
|
11.2
|
1.0
|
|
CB
|
F:GLU51
|
4.2
|
11.8
|
1.0
|
|
CG
|
F:GLU127
|
4.3
|
14.2
|
1.0
|
|
CG2
|
F:ILE123
|
4.4
|
7.8
|
1.0
|
|
NE2
|
F:HIS54
|
4.4
|
10.5
|
1.0
|
|
CD2
|
F:HIS54
|
4.5
|
10.9
|
1.0
|
|
CB
|
F:GLU18
|
4.7
|
12.4
|
1.0
|
|
O
|
F:GLU51
|
4.9
|
10.0
|
1.0
|
|
CA
|
F:GLU18
|
4.9
|
12.3
|
1.0
|
|
Iron binding site 10 out
of 18 in 3ghq
Go back to
Iron Binding Sites List in 3ghq
Iron binding site 10 out
of 18 in the Crystal Structure of E. Coli W35F Bfr Mutant
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Crystal Structure of E. Coli W35F Bfr Mutant within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Fe300
b:37.5
occ:1.00
|
OE1
|
G:GLU127
|
2.0
|
18.8
|
1.0
|
|
OE1
|
G:GLU18
|
2.0
|
18.2
|
1.0
|
|
OE2
|
G:GLU51
|
2.4
|
20.5
|
1.0
|
|
ND1
|
G:HIS54
|
2.4
|
12.2
|
1.0
|
|
OE2
|
G:GLU18
|
2.5
|
18.4
|
1.0
|
|
CD
|
G:GLU18
|
2.6
|
16.9
|
1.0
|
|
CD
|
G:GLU51
|
2.8
|
17.7
|
1.0
|
|
OE1
|
G:GLU51
|
2.9
|
21.3
|
1.0
|
|
CD
|
G:GLU127
|
3.0
|
16.0
|
1.0
|
|
CE1
|
G:HIS54
|
3.3
|
13.3
|
1.0
|
|
OE2
|
G:GLU127
|
3.4
|
16.2
|
1.0
|
|
CG
|
G:HIS54
|
3.4
|
10.9
|
1.0
|
|
CB
|
G:HIS54
|
3.7
|
9.7
|
1.0
|
|
CG
|
G:GLU18
|
4.0
|
14.0
|
1.0
|
|
CG
|
G:GLU51
|
4.0
|
12.9
|
1.0
|
|
CA
|
G:GLU51
|
4.2
|
11.3
|
1.0
|
|
CG
|
G:GLU127
|
4.2
|
14.1
|
1.0
|
|
CB
|
G:GLU51
|
4.3
|
11.8
|
1.0
|
|
CG2
|
G:ILE123
|
4.3
|
7.8
|
1.0
|
|
NE2
|
G:HIS54
|
4.4
|
10.5
|
1.0
|
|
CD2
|
G:HIS54
|
4.5
|
10.9
|
1.0
|
|
CB
|
G:GLU18
|
4.7
|
12.4
|
1.0
|
|
O
|
G:HOH397
|
4.8
|
7.3
|
1.0
|
|
CA
|
G:GLU18
|
4.9
|
12.3
|
1.0
|
|
O
|
G:GLU51
|
5.0
|
10.0
|
1.0
|
|
Reference:
T.L.Lawson,
A.Crow,
A.Lewin,
S.Yasmin,
G.R.Moore,
N.E.Le Brun.
Monitoring the Iron Status of the Ferroxidase Center of Escherichia Coli Bacterioferritin Using Fluorescence Spectroscopy. Biochemistry V. 48 9031 2009.
ISSN: ISSN 0006-2960
PubMed: 19705876
DOI: 10.1021/BI900869X
Page generated: Sun Dec 13 15:06:41 2020
|
