Iron in PDB 3hc1: Crystal Structure of Hdod Domain Protein with Unknown Function (NP_953345.1) From Geobacter Sulfurreducens at 1.90 A Resolution

The structure of Crystal Structure of Hdod Domain Protein with Unknown Function (NP_953345.1) From Geobacter Sulfurreducens at 1.90 A Resolution, PDB code: 3hc1 was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.38 / 1.90
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	47.567, 66.631, 54.412, 90.00, 111.96, 90.00
R / Rfree (%)	18 / 22.6

The structure of Crystal Structure of Hdod Domain Protein with Unknown Function (NP_953345.1) From Geobacter Sulfurreducens at 1.90 A Resolution also contains other interesting chemical elements:

Potassium	(K)	1 atom
Chlorine	(Cl)	1 atom

The binding sites of Iron atom in the Crystal Structure of Hdod Domain Protein with Unknown Function (NP_953345.1) From Geobacter Sulfurreducens at 1.90 A Resolution (pdb code 3hc1). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of Hdod Domain Protein with Unknown Function (NP_953345.1) From Geobacter Sulfurreducens at 1.90 A Resolution, PDB code: 3hc1:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the Crystal Structure of Hdod Domain Protein with Unknown Function (NP_953345.1) From Geobacter Sulfurreducens at 1.90 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Hdod Domain Protein with Unknown Function (NP_953345.1) From Geobacter Sulfurreducens at 1.90 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe305 b:14.7 occ:1.00 O A:HOH318 1.9 15.9 1.0 OD1 A:ASP152 2.2 16.5 1.0 NE2 A:HIS216 2.2 13.5 1.0 NE2 A:HIS217 2.2 8.1 1.0 OE2 A:GLU248 2.2 15.2 1.0 NE2 A:HIS192 2.3 13.8 1.0 CE1 A:HIS217 3.1 14.8 1.0 CG A:ASP152 3.1 18.9 1.0 CD2 A:HIS216 3.1 11.8 1.0 CD2 A:HIS217 3.2 15.8 1.0 CE1 A:HIS216 3.2 20.1 1.0 CD2 A:HIS192 3.2 13.5 1.0 CE1 A:HIS192 3.3 20.1 1.0 CD A:GLU248 3.3 19.3 1.0 FE A:FE306 3.3 19.2 1.0 OD2 A:ASP152 3.4 16.4 1.0 OE1 A:GLU248 3.7 16.7 1.0 CD2 A:HIS151 4.1 19.7 1.0 ND1 A:HIS217 4.2 12.3 1.0 CG A:HIS217 4.3 15.6 1.0 ND1 A:HIS216 4.3 14.1 1.0 CG A:HIS216 4.3 13.5 1.0 ND1 A:HIS192 4.4 17.2 1.0 CG A:HIS192 4.4 15.1 1.0 NE2 A:HIS151 4.4 12.6 1.0 CB A:ASP152 4.5 15.4 1.0 OD2 A:ASP237 4.5 15.0 1.0 CG A:GLU248 4.6 14.9 1.0 OD1 A:ASP237 4.7 16.4 1.0 CG A:ASP237 4.8 20.6 1.0 CA A:ASP152 4.8 15.6 1.0 O A:HIS151 5.0 11.3 1.0

Iron binding site 2 out of 2 in the Crystal Structure of Hdod Domain Protein with Unknown Function (NP_953345.1) From Geobacter Sulfurreducens at 1.90 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Hdod Domain Protein with Unknown Function (NP_953345.1) From Geobacter Sulfurreducens at 1.90 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe306 b:19.2 occ:1.00 O A:HOH318 2.0 15.9 1.0 OD2 A:ASP152 2.1 16.4 1.0 NE2 A:HIS121 2.2 16.7 1.0 OE1 A:GLU248 2.2 16.7 1.0 OD1 A:ASP237 2.3 16.4 1.0 NE2 A:HIS151 2.3 12.6 1.0 CG A:ASP152 3.0 18.9 1.0 CD A:GLU248 3.1 19.3 1.0 CG A:ASP237 3.1 20.6 1.0 CD2 A:HIS151 3.1 19.7 1.0 CE1 A:HIS121 3.2 15.9 1.0 CD2 A:HIS121 3.2 19.9 1.0 OE2 A:GLU248 3.3 15.2 1.0 FE A:FE305 3.3 14.7 1.0 OD1 A:ASP152 3.3 16.5 1.0 CE1 A:HIS151 3.4 20.6 1.0 OD2 A:ASP237 3.6 15.0 1.0 CB A:ASP237 4.1 19.3 1.0 ND1 A:HIS121 4.3 15.2 1.0 O A:HOH315 4.3 14.8 1.0 CB A:ASP152 4.3 15.4 1.0 CG A:HIS151 4.3 12.6 1.0 CG A:HIS121 4.3 16.7 1.0 CG A:GLU248 4.4 14.9 1.0 ND1 A:HIS151 4.4 17.4 1.0 NE2 A:HIS216 4.5 13.5 1.0 O A:HOH330 4.5 19.3 1.0 CD2 A:HIS216 4.6 11.8 1.0 NE2 A:HIS217 4.7 8.1 1.0 CE1 A:HIS217 4.7 14.8 1.0 CA A:ASP237 4.9 15.8 1.0 CG2 A:VAL125 4.9 13.0 1.0

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.