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Iron in PDB 3hip: High-Potential Iron-Sulfur Protein From Chromatium Purpuratum

Protein crystallography data

The structure of High-Potential Iron-Sulfur Protein From Chromatium Purpuratum, PDB code: 3hip was solved by C.A.Kerfeld, A.E.Salmeen, T.O.Yeates, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 2.80
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 55.500, 108.800, 37.200, 90.00, 90.00, 90.00
R / Rfree (%) 22.4 / 28.8

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Iron atom in the High-Potential Iron-Sulfur Protein From Chromatium Purpuratum (pdb code 3hip). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the High-Potential Iron-Sulfur Protein From Chromatium Purpuratum, PDB code: 3hip:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 12 in 3hip

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Iron binding site 1 out of 12 in the High-Potential Iron-Sulfur Protein From Chromatium Purpuratum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of High-Potential Iron-Sulfur Protein From Chromatium Purpuratum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe190

b:11.7
occ:1.00
 FE1 A:SF4190 0.0 11.7 1.0
SG A:CYS143 2.2 12.0 1.0
S2 A:SF4190 2.3 22.5 1.0
S3 A:SF4190 2.3 8.4 1.0
S4 A:SF4190 2.3 10.5 1.0
FE4 A:SF4190 2.4 7.9 1.0
FE3 A:SF4190 2.5 11.1 1.0
FE2 A:SF4190 2.6 8.5 1.0
CB A:CYS143 3.4 12.0 1.0
S1 A:SF4190 3.8 18.7 1.0
CA A:CYS143 3.9 6.1 1.0
SG A:CYS175 4.5 2.0 1.0
SG A:CYS161 4.6 13.9 1.0
CG1 A:ILE169 4.6 2.0 1.0
CD1 A:ILE169 4.6 2.0 1.0
SG A:CYS146 4.6 10.3 1.0
N A:CYS143 4.7 6.1 1.0
CB A:CYS146 4.8 10.3 1.0
CG2 A:ILE169 4.8 2.0 1.0
CB A:ILE169 4.8 2.0 1.0
N A:CYS175 4.8 2.0 1.0
CD1 A:TYR119 4.8 2.0 1.0
CA A:TRP174 4.8 2.0 1.0
CE1 A:TYR119 4.9 2.0 1.0
C A:TRP174 4.9 2.0 1.0
CB A:CYS175 4.9 2.0 1.0
N A:TRP174 5.0 2.0 1.0

Iron binding site 2 out of 12 in 3hip

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Iron binding site 2 out of 12 in the High-Potential Iron-Sulfur Protein From Chromatium Purpuratum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of High-Potential Iron-Sulfur Protein From Chromatium Purpuratum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe190

b:8.5
occ:1.00
 FE2 A:SF4190 0.0 8.5 1.0
SG A:CYS146 2.3 10.3 1.0
S4 A:SF4190 2.3 10.5 1.0
S1 A:SF4190 2.3 18.7 1.0
S3 A:SF4190 2.3 8.4 1.0
FE4 A:SF4190 2.5 7.9 1.0
FE1 A:SF4190 2.6 11.7 1.0
FE3 A:SF4190 2.6 11.1 1.0
CB A:CYS146 3.2 10.3 1.0
S2 A:SF4190 3.9 22.5 1.0
SG A:CYS175 4.5 2.0 1.0
SG A:CYS143 4.5 12.0 1.0
CB A:PHE148 4.6 2.0 1.0
SG A:CYS161 4.6 13.9 1.0
CA A:CYS146 4.6 4.5 1.0
CA A:TRP178 4.6 2.0 1.0
CA A:CYS143 4.7 6.1 1.0
CD2 A:PHE148 4.7 2.0 1.0
CD1 A:TRP178 4.8 11.4 1.0
N A:MET149 4.8 6.7 1.0
N A:PHE148 4.8 2.0 1.0
CB A:CYS143 4.9 12.0 1.0
N A:TRP178 5.0 2.0 1.0

Iron binding site 3 out of 12 in 3hip

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Iron binding site 3 out of 12 in the High-Potential Iron-Sulfur Protein From Chromatium Purpuratum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of High-Potential Iron-Sulfur Protein From Chromatium Purpuratum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe190

b:11.1
occ:1.00
 FE3 A:SF4190 0.0 11.1 1.0
SG A:CYS161 2.3 13.9 1.0
S4 A:SF4190 2.3 10.5 1.0
S1 A:SF4190 2.3 18.7 1.0
S2 A:SF4190 2.3 22.5 1.0
FE4 A:SF4190 2.4 7.9 1.0
FE1 A:SF4190 2.5 11.7 1.0
FE2 A:SF4190 2.6 8.5 1.0
CB A:CYS161 3.5 13.9 1.0
S3 A:SF4190 3.8 8.4 1.0
SG A:CYS175 4.3 2.0 1.0
CB A:PHE148 4.5 2.0 1.0
SG A:CYS146 4.5 10.3 1.0
SG A:CYS143 4.6 12.0 1.0
CA A:CYS161 4.6 2.0 1.0
CE2 A:PHE164 4.7 10.4 1.0
CD2 A:PHE164 4.7 10.4 1.0
CG2 A:ILE169 4.8 2.0 1.0
O A:PHE148 4.9 2.0 1.0
C A:PHE148 4.9 2.0 1.0
CG1 A:ILE169 4.9 2.0 1.0
CG A:LEU163 5.0 16.2 1.0

Iron binding site 4 out of 12 in 3hip

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Iron binding site 4 out of 12 in the High-Potential Iron-Sulfur Protein From Chromatium Purpuratum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of High-Potential Iron-Sulfur Protein From Chromatium Purpuratum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe190

b:7.9
occ:1.00
 FE4 A:SF4190 0.0 7.9 1.0
SG A:CYS175 2.2 2.0 1.0
S2 A:SF4190 2.3 22.5 1.0
S3 A:SF4190 2.3 8.4 1.0
S1 A:SF4190 2.3 18.7 1.0
FE3 A:SF4190 2.4 11.1 1.0
FE1 A:SF4190 2.4 11.7 1.0
FE2 A:SF4190 2.5 8.5 1.0
CB A:CYS175 3.3 2.0 1.0
S4 A:SF4190 3.7 10.5 1.0
N A:CYS175 4.1 2.0 1.0
CA A:CYS175 4.2 2.0 1.0
SG A:CYS161 4.4 13.9 1.0
SG A:CYS143 4.5 12.0 1.0
O A:CYS175 4.6 2.0 1.0
SG A:CYS146 4.6 10.3 1.0
C A:CYS175 4.6 2.0 1.0
C A:TRP174 4.7 2.0 1.0
CB A:SER177 4.9 12.4 1.0
N A:TRP178 4.9 2.0 1.0
CE2 A:PHE164 5.0 10.4 1.0

Iron binding site 5 out of 12 in 3hip

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Iron binding site 5 out of 12 in the High-Potential Iron-Sulfur Protein From Chromatium Purpuratum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of High-Potential Iron-Sulfur Protein From Chromatium Purpuratum within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe190

b:18.9
occ:1.00
 FE1 B:SF4190 0.0 18.9 1.0
SG B:CYS143 2.3 12.0 1.0
S4 B:SF4190 2.3 22.4 1.0
FE4 B:SF4190 2.3 16.0 1.0
S3 B:SF4190 2.3 26.5 1.0
S2 B:SF4190 2.3 16.8 1.0
FE2 B:SF4190 2.5 13.9 1.0
FE3 B:SF4190 2.6 12.4 1.0
CB B:CYS143 3.4 12.0 1.0
S1 B:SF4190 3.7 17.2 1.0
CA B:CYS143 3.9 6.1 1.0
SG B:CYS175 4.4 2.0 1.0
CD1 B:ILE169 4.6 2.0 1.0
N B:CYS143 4.7 6.1 1.0
SG B:CYS161 4.7 13.9 1.0
CG1 B:ILE169 4.7 2.0 1.0
N B:CYS175 4.7 2.0 1.0
CB B:CYS146 4.7 10.3 1.0
SG B:CYS146 4.8 10.3 1.0
CA B:TRP174 4.8 2.0 1.0
CB B:CYS175 4.9 2.0 1.0
CD1 B:TYR119 4.9 2.0 1.0
C B:TRP174 4.9 2.0 1.0
CB B:ILE169 4.9 2.0 1.0
CG2 B:ILE169 4.9 2.0 1.0
CE1 B:TYR119 4.9 2.0 1.0

Iron binding site 6 out of 12 in 3hip

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Iron binding site 6 out of 12 in the High-Potential Iron-Sulfur Protein From Chromatium Purpuratum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of High-Potential Iron-Sulfur Protein From Chromatium Purpuratum within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe190

b:13.9
occ:1.00
 FE2 B:SF4190 0.0 13.9 1.0
S1 B:SF4190 2.3 17.2 1.0
S3 B:SF4190 2.3 26.5 1.0
S4 B:SF4190 2.3 22.4 1.0
SG B:CYS146 2.4 10.3 1.0
FE4 B:SF4190 2.5 16.0 1.0
FE1 B:SF4190 2.5 18.9 1.0
FE3 B:SF4190 2.6 12.4 1.0
CB B:CYS146 3.1 10.3 1.0
S2 B:SF4190 3.9 16.8 1.0
SG B:CYS143 4.4 12.0 1.0
SG B:CYS175 4.4 2.0 1.0
CB B:PHE148 4.5 2.0 1.0
CD2 B:PHE148 4.6 2.0 1.0
CA B:CYS146 4.6 4.5 1.0
CA B:CYS143 4.6 6.1 1.0
SG B:CYS161 4.6 13.9 1.0
CA B:TRP178 4.7 2.0 1.0
CB B:CYS143 4.8 12.0 1.0
N B:MET149 4.8 6.7 1.0
CD1 B:TRP178 4.9 11.4 1.0
N B:PHE148 4.9 2.0 1.0
C B:PHE148 4.9 2.0 1.0
N B:TRP178 5.0 2.0 1.0

Iron binding site 7 out of 12 in 3hip

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Iron binding site 7 out of 12 in the High-Potential Iron-Sulfur Protein From Chromatium Purpuratum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of High-Potential Iron-Sulfur Protein From Chromatium Purpuratum within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe190

b:12.4
occ:1.00
 FE3 B:SF4190 0.0 12.4 1.0
SG B:CYS161 2.3 13.9 1.0
S1 B:SF4190 2.3 17.2 1.0
S4 B:SF4190 2.3 22.4 1.0
S2 B:SF4190 2.3 16.8 1.0
FE4 B:SF4190 2.4 16.0 1.0
FE1 B:SF4190 2.6 18.9 1.0
FE2 B:SF4190 2.6 13.9 1.0
CB B:CYS161 3.4 13.9 1.0
S3 B:SF4190 3.9 26.5 1.0
SG B:CYS175 4.3 2.0 1.0
CB B:PHE148 4.5 2.0 1.0
CA B:CYS161 4.6 2.0 1.0
CE2 B:PHE164 4.6 10.4 1.0
SG B:CYS143 4.7 12.0 1.0
CD2 B:PHE164 4.7 10.4 1.0
SG B:CYS146 4.7 10.3 1.0
CG2 B:ILE169 4.8 2.0 1.0
C B:PHE148 4.9 2.0 1.0
CG B:LEU163 4.9 16.2 1.0
CD1 B:LEU163 4.9 16.2 1.0
O B:PHE148 4.9 2.0 1.0
CG1 B:ILE169 4.9 2.0 1.0

Iron binding site 8 out of 12 in 3hip

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Iron binding site 8 out of 12 in the High-Potential Iron-Sulfur Protein From Chromatium Purpuratum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of High-Potential Iron-Sulfur Protein From Chromatium Purpuratum within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe190

b:16.0
occ:1.00
 FE4 B:SF4190 0.0 16.0 1.0
SG B:CYS175 2.3 2.0 1.0
FE1 B:SF4190 2.3 18.9 1.0
S3 B:SF4190 2.3 26.5 1.0
S1 B:SF4190 2.3 17.2 1.0
S2 B:SF4190 2.3 16.8 1.0
FE3 B:SF4190 2.4 12.4 1.0
FE2 B:SF4190 2.5 13.9 1.0
CB B:CYS175 3.3 2.0 1.0
S4 B:SF4190 3.6 22.4 1.0
N B:CYS175 4.0 2.0 1.0
CA B:CYS175 4.1 2.0 1.0
SG B:CYS143 4.3 12.0 1.0
SG B:CYS161 4.5 13.9 1.0
C B:CYS175 4.6 2.0 1.0
O B:CYS175 4.7 2.0 1.0
SG B:CYS146 4.7 10.3 1.0
C B:TRP174 4.7 2.0 1.0
CB B:SER177 4.9 12.4 1.0
N B:TRP178 4.9 2.0 1.0

Iron binding site 9 out of 12 in 3hip

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Iron binding site 9 out of 12 in the High-Potential Iron-Sulfur Protein From Chromatium Purpuratum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of High-Potential Iron-Sulfur Protein From Chromatium Purpuratum within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe190

b:10.3
occ:1.00
 FE1 C:SF4190 0.0 10.3 1.0
S4 C:SF4190 2.3 9.8 1.0
SG C:CYS143 2.3 12.0 1.0
S2 C:SF4190 2.3 6.0 1.0
S3 C:SF4190 2.3 13.1 1.0
FE4 C:SF4190 2.4 12.2 1.0
FE2 C:SF4190 2.5 6.1 1.0
FE3 C:SF4190 2.6 7.6 1.0
CB C:CYS143 3.4 12.0 1.0
S1 C:SF4190 3.8 10.5 1.0
CA C:CYS143 3.9 6.1 1.0
SG C:CYS175 4.4 2.0 1.0
SG C:CYS146 4.6 10.3 1.0
CD1 C:ILE169 4.6 2.0 1.0
SG C:CYS161 4.6 13.9 1.0
N C:CYS175 4.6 2.0 1.0
N C:CYS143 4.6 6.1 1.0
CG1 C:ILE169 4.7 2.0 1.0
CA C:TRP174 4.7 2.0 1.0
CB C:CYS146 4.8 10.3 1.0
C C:TRP174 4.8 2.0 1.0
CD1 C:TYR119 4.8 2.0 1.0
CB C:CYS175 4.8 2.0 1.0
CB C:ILE169 4.9 2.0 1.0
CE1 C:TYR119 4.9 2.0 1.0
CG2 C:ILE169 4.9 2.0 1.0
N C:TRP174 4.9 2.0 1.0

Iron binding site 10 out of 12 in 3hip

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Iron binding site 10 out of 12 in the High-Potential Iron-Sulfur Protein From Chromatium Purpuratum


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of High-Potential Iron-Sulfur Protein From Chromatium Purpuratum within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe190

b:6.1
occ:1.00
 FE2 C:SF4190 0.0 6.1 1.0
S1 C:SF4190 2.3 10.5 1.0
S3 C:SF4190 2.3 13.1 1.0
SG C:CYS146 2.3 10.3 1.0
S4 C:SF4190 2.3 9.8 1.0
FE4 C:SF4190 2.4 12.2 1.0
FE1 C:SF4190 2.5 10.3 1.0
FE3 C:SF4190 2.6 7.6 1.0
CB C:CYS146 3.2 10.3 1.0
S2 C:SF4190 3.9 6.0 1.0
SG C:CYS175 4.4 2.0 1.0
SG C:CYS143 4.5 12.0 1.0
SG C:CYS161 4.6 13.9 1.0
CA C:TRP178 4.6 2.0 1.0
CB C:PHE148 4.6 2.0 1.0
CA C:CYS143 4.7 6.1 1.0
CA C:CYS146 4.7 4.5 1.0
CD2 C:PHE148 4.7 2.0 1.0
CB C:CYS143 4.8 12.0 1.0
CD1 C:TRP178 4.8 11.4 1.0
N C:MET149 4.9 6.7 1.0
N C:PHE148 4.9 2.0 1.0
N C:TRP178 4.9 2.0 1.0
O C:SER177 5.0 12.4 1.0

Reference:

C.A.Kerfeld, A.E.Salmeen, T.O.Yeates. Crystal Structure and Possible Dimerization of the High-Potential Iron-Sulfur Protein From Chromatium Purpuratum. Biochemistry V. 37 13911 1998.
ISSN: ISSN 0006-2960
PubMed: 9760225
DOI: 10.1021/BI9810252
Page generated: Sun Aug 4 11:30:53 2024

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