Iron in PDB 3hni: Crystal Structure of the Zn-Induced Tetramer of the Engineered Cyt CB562 Variant Ridc-1
Protein crystallography data
The structure of Crystal Structure of the Zn-Induced Tetramer of the Engineered Cyt CB562 Variant Ridc-1, PDB code: 3hni
was solved by
E.N.Salgado,
R.A.Lewis,
J.Brodin,
F.A.Tezcan,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
45.74 /
2.35
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
57.208,
87.935,
152.174,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
22.6 /
27.8
|
Other elements in 3hni:
The structure of Crystal Structure of the Zn-Induced Tetramer of the Engineered Cyt CB562 Variant Ridc-1 also contains other interesting chemical elements:
Iron Binding Sites:
The binding sites of Iron atom in the Crystal Structure of the Zn-Induced Tetramer of the Engineered Cyt CB562 Variant Ridc-1
(pdb code 3hni). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the
Crystal Structure of the Zn-Induced Tetramer of the Engineered Cyt CB562 Variant Ridc-1, PDB code: 3hni:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Iron binding site 1 out
of 8 in 3hni
Go back to
Iron Binding Sites List in 3hni
Iron binding site 1 out
of 8 in the Crystal Structure of the Zn-Induced Tetramer of the Engineered Cyt CB562 Variant Ridc-1
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Crystal Structure of the Zn-Induced Tetramer of the Engineered Cyt CB562 Variant Ridc-1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe150
b:22.6
occ:1.00
|
FE
|
A:HEM150
|
0.0
|
22.6
|
1.0
|
NE2
|
A:HIS102
|
2.0
|
31.8
|
1.0
|
NC
|
A:HEM150
|
2.0
|
21.9
|
1.0
|
NB
|
A:HEM150
|
2.0
|
22.0
|
1.0
|
NA
|
A:HEM150
|
2.1
|
22.9
|
1.0
|
ND
|
A:HEM150
|
2.1
|
23.3
|
1.0
|
SD
|
A:MET7
|
2.3
|
28.8
|
1.0
|
CE1
|
A:HIS102
|
2.9
|
32.8
|
1.0
|
CD2
|
A:HIS102
|
3.0
|
29.8
|
1.0
|
C1B
|
A:HEM150
|
3.0
|
22.4
|
1.0
|
C4C
|
A:HEM150
|
3.0
|
22.1
|
1.0
|
C4A
|
A:HEM150
|
3.1
|
21.6
|
1.0
|
C1C
|
A:HEM150
|
3.1
|
22.8
|
1.0
|
C1D
|
A:HEM150
|
3.1
|
23.1
|
1.0
|
C4B
|
A:HEM150
|
3.1
|
22.7
|
1.0
|
C4D
|
A:HEM150
|
3.1
|
24.4
|
1.0
|
C1A
|
A:HEM150
|
3.1
|
24.5
|
1.0
|
CHB
|
A:HEM150
|
3.4
|
23.3
|
1.0
|
CHD
|
A:HEM150
|
3.4
|
23.0
|
1.0
|
CHC
|
A:HEM150
|
3.5
|
22.2
|
1.0
|
CHA
|
A:HEM150
|
3.5
|
23.8
|
1.0
|
CG
|
A:MET7
|
3.5
|
28.2
|
1.0
|
CE
|
A:MET7
|
3.6
|
26.1
|
1.0
|
ND1
|
A:HIS102
|
4.1
|
32.9
|
1.0
|
CG
|
A:HIS102
|
4.1
|
32.3
|
1.0
|
CB
|
A:MET7
|
4.3
|
29.0
|
1.0
|
C3C
|
A:HEM150
|
4.3
|
22.6
|
1.0
|
C2B
|
A:HEM150
|
4.3
|
23.6
|
1.0
|
C2C
|
A:HEM150
|
4.3
|
22.6
|
1.0
|
C3A
|
A:HEM150
|
4.3
|
22.7
|
1.0
|
C2D
|
A:HEM150
|
4.3
|
23.4
|
1.0
|
C3B
|
A:HEM150
|
4.3
|
23.3
|
1.0
|
C2A
|
A:HEM150
|
4.3
|
23.9
|
1.0
|
C3D
|
A:HEM150
|
4.3
|
25.4
|
1.0
|
|
Iron binding site 2 out
of 8 in 3hni
Go back to
Iron Binding Sites List in 3hni
Iron binding site 2 out
of 8 in the Crystal Structure of the Zn-Induced Tetramer of the Engineered Cyt CB562 Variant Ridc-1
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Crystal Structure of the Zn-Induced Tetramer of the Engineered Cyt CB562 Variant Ridc-1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe150
b:24.3
occ:1.00
|
FE
|
B:HEM150
|
0.0
|
24.3
|
1.0
|
NE2
|
B:HIS102
|
2.0
|
30.5
|
1.0
|
ND
|
B:HEM150
|
2.0
|
25.6
|
1.0
|
NC
|
B:HEM150
|
2.0
|
24.1
|
1.0
|
NB
|
B:HEM150
|
2.1
|
23.1
|
1.0
|
NA
|
B:HEM150
|
2.1
|
26.3
|
1.0
|
SD
|
B:MET7
|
2.3
|
28.3
|
1.0
|
CE1
|
B:HIS102
|
3.0
|
32.3
|
1.0
|
CD2
|
B:HIS102
|
3.0
|
32.5
|
1.0
|
C1D
|
B:HEM150
|
3.0
|
25.9
|
1.0
|
C4D
|
B:HEM150
|
3.0
|
26.4
|
1.0
|
C4C
|
B:HEM150
|
3.0
|
24.7
|
1.0
|
C4B
|
B:HEM150
|
3.1
|
21.1
|
1.0
|
C1C
|
B:HEM150
|
3.1
|
22.3
|
1.0
|
C1A
|
B:HEM150
|
3.1
|
27.3
|
1.0
|
C1B
|
B:HEM150
|
3.1
|
22.6
|
1.0
|
C4A
|
B:HEM150
|
3.1
|
27.1
|
1.0
|
CHD
|
B:HEM150
|
3.4
|
24.6
|
1.0
|
CHA
|
B:HEM150
|
3.4
|
26.2
|
1.0
|
CG
|
B:MET7
|
3.4
|
30.1
|
1.0
|
CHC
|
B:HEM150
|
3.4
|
21.8
|
1.0
|
CE
|
B:MET7
|
3.5
|
28.3
|
1.0
|
CHB
|
B:HEM150
|
3.5
|
25.1
|
1.0
|
ND1
|
B:HIS102
|
4.1
|
34.0
|
1.0
|
CG
|
B:HIS102
|
4.1
|
33.4
|
1.0
|
CB
|
B:MET7
|
4.2
|
30.1
|
1.0
|
C2D
|
B:HEM150
|
4.3
|
27.0
|
1.0
|
C3D
|
B:HEM150
|
4.3
|
27.8
|
1.0
|
C3C
|
B:HEM150
|
4.3
|
24.1
|
1.0
|
C3B
|
B:HEM150
|
4.3
|
21.9
|
1.0
|
C2C
|
B:HEM150
|
4.3
|
23.3
|
1.0
|
C2B
|
B:HEM150
|
4.3
|
21.7
|
1.0
|
C2A
|
B:HEM150
|
4.3
|
29.3
|
1.0
|
C3A
|
B:HEM150
|
4.3
|
28.6
|
1.0
|
CA
|
B:MET7
|
5.0
|
30.2
|
1.0
|
|
Iron binding site 3 out
of 8 in 3hni
Go back to
Iron Binding Sites List in 3hni
Iron binding site 3 out
of 8 in the Crystal Structure of the Zn-Induced Tetramer of the Engineered Cyt CB562 Variant Ridc-1
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Crystal Structure of the Zn-Induced Tetramer of the Engineered Cyt CB562 Variant Ridc-1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe150
b:31.0
occ:1.00
|
FE
|
C:HEM150
|
0.0
|
31.0
|
1.0
|
NB
|
C:HEM150
|
2.0
|
29.4
|
1.0
|
NE2
|
C:HIS102
|
2.0
|
32.1
|
1.0
|
ND
|
C:HEM150
|
2.1
|
30.4
|
1.0
|
NA
|
C:HEM150
|
2.1
|
30.8
|
1.0
|
NC
|
C:HEM150
|
2.1
|
30.7
|
1.0
|
SD
|
C:MET7
|
2.4
|
26.1
|
1.0
|
CE1
|
C:HIS102
|
2.9
|
32.9
|
1.0
|
C1B
|
C:HEM150
|
3.0
|
31.3
|
1.0
|
C4B
|
C:HEM150
|
3.0
|
29.8
|
1.0
|
CD2
|
C:HIS102
|
3.1
|
31.8
|
1.0
|
C4A
|
C:HEM150
|
3.1
|
30.7
|
1.0
|
C1D
|
C:HEM150
|
3.1
|
31.5
|
1.0
|
C4D
|
C:HEM150
|
3.1
|
32.4
|
1.0
|
C1A
|
C:HEM150
|
3.1
|
31.8
|
1.0
|
C1C
|
C:HEM150
|
3.1
|
29.1
|
1.0
|
C4C
|
C:HEM150
|
3.1
|
30.7
|
1.0
|
CHB
|
C:HEM150
|
3.4
|
32.0
|
1.0
|
CE
|
C:MET7
|
3.4
|
26.2
|
1.0
|
CHC
|
C:HEM150
|
3.4
|
30.5
|
1.0
|
CHA
|
C:HEM150
|
3.5
|
31.8
|
1.0
|
CHD
|
C:HEM150
|
3.5
|
31.2
|
1.0
|
CG
|
C:MET7
|
3.5
|
28.0
|
1.0
|
ND1
|
C:HIS102
|
4.1
|
32.4
|
1.0
|
CG
|
C:HIS102
|
4.1
|
32.6
|
1.0
|
C2B
|
C:HEM150
|
4.2
|
29.8
|
1.0
|
C3B
|
C:HEM150
|
4.2
|
29.8
|
1.0
|
CB
|
C:MET7
|
4.3
|
28.7
|
1.0
|
C3A
|
C:HEM150
|
4.3
|
30.4
|
1.0
|
C2D
|
C:HEM150
|
4.3
|
32.6
|
1.0
|
C2A
|
C:HEM150
|
4.3
|
32.6
|
1.0
|
C3D
|
C:HEM150
|
4.3
|
34.1
|
1.0
|
C2C
|
C:HEM150
|
4.4
|
29.9
|
1.0
|
C3C
|
C:HEM150
|
4.4
|
28.7
|
1.0
|
|
Iron binding site 4 out
of 8 in 3hni
Go back to
Iron Binding Sites List in 3hni
Iron binding site 4 out
of 8 in the Crystal Structure of the Zn-Induced Tetramer of the Engineered Cyt CB562 Variant Ridc-1
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Crystal Structure of the Zn-Induced Tetramer of the Engineered Cyt CB562 Variant Ridc-1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe150
b:26.2
occ:1.00
|
FE
|
D:HEM150
|
0.0
|
26.2
|
1.0
|
NE2
|
D:HIS102
|
2.0
|
31.1
|
1.0
|
NC
|
D:HEM150
|
2.0
|
25.3
|
1.0
|
NB
|
D:HEM150
|
2.1
|
26.1
|
1.0
|
NA
|
D:HEM150
|
2.1
|
28.3
|
1.0
|
ND
|
D:HEM150
|
2.1
|
27.0
|
1.0
|
SD
|
D:MET7
|
2.4
|
28.7
|
1.0
|
CD2
|
D:HIS102
|
2.9
|
29.9
|
1.0
|
C1C
|
D:HEM150
|
3.0
|
24.7
|
1.0
|
C4B
|
D:HEM150
|
3.0
|
25.6
|
1.0
|
C4C
|
D:HEM150
|
3.0
|
25.0
|
1.0
|
CE1
|
D:HIS102
|
3.1
|
32.0
|
1.0
|
C1A
|
D:HEM150
|
3.1
|
28.2
|
1.0
|
C1D
|
D:HEM150
|
3.1
|
26.8
|
1.0
|
C4D
|
D:HEM150
|
3.1
|
27.2
|
1.0
|
C1B
|
D:HEM150
|
3.1
|
26.3
|
1.0
|
C4A
|
D:HEM150
|
3.1
|
28.0
|
1.0
|
CHC
|
D:HEM150
|
3.4
|
25.0
|
1.0
|
CHD
|
D:HEM150
|
3.4
|
27.3
|
1.0
|
CHA
|
D:HEM150
|
3.4
|
27.0
|
1.0
|
CE
|
D:MET7
|
3.5
|
26.2
|
1.0
|
CHB
|
D:HEM150
|
3.5
|
27.2
|
1.0
|
CG
|
D:MET7
|
3.5
|
29.3
|
1.0
|
CG
|
D:HIS102
|
4.1
|
30.6
|
1.0
|
ND1
|
D:HIS102
|
4.1
|
31.0
|
1.0
|
CB
|
D:MET7
|
4.2
|
29.5
|
1.0
|
C2C
|
D:HEM150
|
4.2
|
25.0
|
1.0
|
C3C
|
D:HEM150
|
4.3
|
24.2
|
1.0
|
C3B
|
D:HEM150
|
4.3
|
25.5
|
1.0
|
C2A
|
D:HEM150
|
4.3
|
29.6
|
1.0
|
C2B
|
D:HEM150
|
4.3
|
23.5
|
1.0
|
C2D
|
D:HEM150
|
4.3
|
27.4
|
1.0
|
C3A
|
D:HEM150
|
4.3
|
28.7
|
1.0
|
C3D
|
D:HEM150
|
4.3
|
28.7
|
1.0
|
|
Iron binding site 5 out
of 8 in 3hni
Go back to
Iron Binding Sites List in 3hni
Iron binding site 5 out
of 8 in the Crystal Structure of the Zn-Induced Tetramer of the Engineered Cyt CB562 Variant Ridc-1
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Crystal Structure of the Zn-Induced Tetramer of the Engineered Cyt CB562 Variant Ridc-1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe150
b:23.2
occ:1.00
|
FE
|
E:HEM150
|
0.0
|
23.2
|
1.0
|
NE2
|
E:HIS102
|
2.0
|
30.2
|
1.0
|
ND
|
E:HEM150
|
2.0
|
25.0
|
1.0
|
NA
|
E:HEM150
|
2.0
|
24.2
|
1.0
|
NC
|
E:HEM150
|
2.1
|
23.9
|
1.0
|
NB
|
E:HEM150
|
2.1
|
24.2
|
1.0
|
SD
|
E:MET7
|
2.3
|
29.6
|
1.0
|
CD2
|
E:HIS102
|
3.0
|
31.2
|
1.0
|
C1D
|
E:HEM150
|
3.0
|
26.2
|
1.0
|
CE1
|
E:HIS102
|
3.0
|
30.6
|
1.0
|
C4A
|
E:HEM150
|
3.0
|
24.8
|
1.0
|
C4D
|
E:HEM150
|
3.0
|
26.9
|
1.0
|
C4C
|
E:HEM150
|
3.1
|
23.5
|
1.0
|
C1A
|
E:HEM150
|
3.1
|
25.2
|
1.0
|
C1B
|
E:HEM150
|
3.1
|
23.0
|
1.0
|
C4B
|
E:HEM150
|
3.1
|
23.6
|
1.0
|
C1C
|
E:HEM150
|
3.1
|
23.9
|
1.0
|
CHD
|
E:HEM150
|
3.4
|
24.6
|
1.0
|
CHA
|
E:HEM150
|
3.4
|
25.7
|
1.0
|
CHB
|
E:HEM150
|
3.4
|
24.7
|
1.0
|
CE
|
E:MET7
|
3.5
|
28.9
|
1.0
|
CHC
|
E:HEM150
|
3.5
|
23.8
|
1.0
|
CG
|
E:MET7
|
3.5
|
29.1
|
1.0
|
ND1
|
E:HIS102
|
4.1
|
31.2
|
1.0
|
CG
|
E:HIS102
|
4.1
|
31.5
|
1.0
|
CB
|
E:MET7
|
4.2
|
29.7
|
1.0
|
C2D
|
E:HEM150
|
4.2
|
27.3
|
1.0
|
C3D
|
E:HEM150
|
4.3
|
28.2
|
1.0
|
C3A
|
E:HEM150
|
4.3
|
25.5
|
1.0
|
C2A
|
E:HEM150
|
4.3
|
26.6
|
1.0
|
C2B
|
E:HEM150
|
4.3
|
23.2
|
1.0
|
C3B
|
E:HEM150
|
4.3
|
23.6
|
1.0
|
C3C
|
E:HEM150
|
4.3
|
24.8
|
1.0
|
C2C
|
E:HEM150
|
4.3
|
22.9
|
1.0
|
NH1
|
E:ARG106
|
4.7
|
46.8
|
1.0
|
CA
|
E:MET7
|
5.0
|
30.1
|
1.0
|
|
Iron binding site 6 out
of 8 in 3hni
Go back to
Iron Binding Sites List in 3hni
Iron binding site 6 out
of 8 in the Crystal Structure of the Zn-Induced Tetramer of the Engineered Cyt CB562 Variant Ridc-1
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Crystal Structure of the Zn-Induced Tetramer of the Engineered Cyt CB562 Variant Ridc-1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Fe150
b:26.9
occ:1.00
|
FE
|
F:HEM150
|
0.0
|
26.9
|
1.0
|
NE2
|
F:HIS102
|
2.0
|
29.4
|
1.0
|
NC
|
F:HEM150
|
2.0
|
25.1
|
1.0
|
ND
|
F:HEM150
|
2.1
|
27.2
|
1.0
|
NA
|
F:HEM150
|
2.1
|
27.0
|
1.0
|
NB
|
F:HEM150
|
2.1
|
24.9
|
1.0
|
SD
|
F:MET7
|
2.3
|
30.3
|
1.0
|
CE1
|
F:HIS102
|
3.0
|
31.0
|
1.0
|
CD2
|
F:HIS102
|
3.0
|
29.8
|
1.0
|
C4D
|
F:HEM150
|
3.0
|
26.9
|
1.0
|
C1A
|
F:HEM150
|
3.0
|
27.6
|
1.0
|
C1C
|
F:HEM150
|
3.0
|
22.9
|
1.0
|
C4B
|
F:HEM150
|
3.1
|
23.9
|
1.0
|
C4C
|
F:HEM150
|
3.1
|
25.5
|
1.0
|
C1D
|
F:HEM150
|
3.1
|
27.1
|
1.0
|
C4A
|
F:HEM150
|
3.2
|
26.9
|
1.0
|
C1B
|
F:HEM150
|
3.2
|
24.9
|
1.0
|
CHA
|
F:HEM150
|
3.3
|
26.1
|
1.0
|
CE
|
F:MET7
|
3.4
|
29.5
|
1.0
|
CHC
|
F:HEM150
|
3.4
|
24.0
|
1.0
|
CG
|
F:MET7
|
3.4
|
29.7
|
1.0
|
CHD
|
F:HEM150
|
3.5
|
26.1
|
1.0
|
CHB
|
F:HEM150
|
3.6
|
26.0
|
1.0
|
ND1
|
F:HIS102
|
4.1
|
29.7
|
1.0
|
CG
|
F:HIS102
|
4.1
|
30.2
|
1.0
|
CB
|
F:MET7
|
4.2
|
30.0
|
1.0
|
C2C
|
F:HEM150
|
4.3
|
22.4
|
1.0
|
C3D
|
F:HEM150
|
4.3
|
28.0
|
1.0
|
C3C
|
F:HEM150
|
4.3
|
23.7
|
1.0
|
C2A
|
F:HEM150
|
4.3
|
28.7
|
1.0
|
C2D
|
F:HEM150
|
4.3
|
27.4
|
1.0
|
C3B
|
F:HEM150
|
4.3
|
24.6
|
1.0
|
C3A
|
F:HEM150
|
4.4
|
27.7
|
1.0
|
C2B
|
F:HEM150
|
4.4
|
23.0
|
1.0
|
CA
|
F:MET7
|
5.0
|
30.1
|
1.0
|
|
Iron binding site 7 out
of 8 in 3hni
Go back to
Iron Binding Sites List in 3hni
Iron binding site 7 out
of 8 in the Crystal Structure of the Zn-Induced Tetramer of the Engineered Cyt CB562 Variant Ridc-1
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Crystal Structure of the Zn-Induced Tetramer of the Engineered Cyt CB562 Variant Ridc-1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Fe150
b:28.0
occ:1.00
|
FE
|
G:HEM150
|
0.0
|
28.0
|
1.0
|
NE2
|
G:HIS102
|
2.0
|
29.9
|
1.0
|
NA
|
G:HEM150
|
2.1
|
28.4
|
1.0
|
NB
|
G:HEM150
|
2.1
|
26.4
|
1.0
|
ND
|
G:HEM150
|
2.1
|
28.0
|
1.0
|
NC
|
G:HEM150
|
2.1
|
27.4
|
1.0
|
SD
|
G:MET7
|
2.4
|
25.9
|
1.0
|
CD2
|
G:HIS102
|
3.0
|
30.6
|
1.0
|
CE1
|
G:HIS102
|
3.0
|
31.5
|
1.0
|
C4D
|
G:HEM150
|
3.1
|
28.4
|
1.0
|
C1A
|
G:HEM150
|
3.1
|
27.7
|
1.0
|
C1B
|
G:HEM150
|
3.1
|
26.3
|
1.0
|
C4A
|
G:HEM150
|
3.1
|
27.9
|
1.0
|
C1D
|
G:HEM150
|
3.1
|
28.5
|
1.0
|
C4B
|
G:HEM150
|
3.1
|
26.2
|
1.0
|
C4C
|
G:HEM150
|
3.1
|
26.9
|
1.0
|
C1C
|
G:HEM150
|
3.1
|
25.6
|
1.0
|
CHA
|
G:HEM150
|
3.4
|
27.7
|
1.0
|
CHB
|
G:HEM150
|
3.4
|
27.6
|
1.0
|
CHD
|
G:HEM150
|
3.4
|
28.2
|
1.0
|
CHC
|
G:HEM150
|
3.5
|
26.5
|
1.0
|
CG
|
G:MET7
|
3.5
|
28.6
|
1.0
|
CE
|
G:MET7
|
3.5
|
25.9
|
1.0
|
ND1
|
G:HIS102
|
4.1
|
31.1
|
1.0
|
CG
|
G:HIS102
|
4.2
|
31.6
|
1.0
|
CB
|
G:MET7
|
4.2
|
29.2
|
1.0
|
C2B
|
G:HEM150
|
4.3
|
26.3
|
1.0
|
C2A
|
G:HEM150
|
4.3
|
28.6
|
1.0
|
C3A
|
G:HEM150
|
4.3
|
26.9
|
1.0
|
C3B
|
G:HEM150
|
4.3
|
26.1
|
1.0
|
C3D
|
G:HEM150
|
4.3
|
30.9
|
1.0
|
C2D
|
G:HEM150
|
4.3
|
29.5
|
1.0
|
C3C
|
G:HEM150
|
4.3
|
25.7
|
1.0
|
C2C
|
G:HEM150
|
4.3
|
26.3
|
1.0
|
CD
|
G:ARG106
|
4.9
|
37.9
|
1.0
|
CA
|
G:MET7
|
5.0
|
30.0
|
1.0
|
|
Iron binding site 8 out
of 8 in 3hni
Go back to
Iron Binding Sites List in 3hni
Iron binding site 8 out
of 8 in the Crystal Structure of the Zn-Induced Tetramer of the Engineered Cyt CB562 Variant Ridc-1
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Crystal Structure of the Zn-Induced Tetramer of the Engineered Cyt CB562 Variant Ridc-1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Fe150
b:24.5
occ:1.00
|
FE
|
H:HEM150
|
0.0
|
24.5
|
1.0
|
NE2
|
H:HIS102
|
2.0
|
31.2
|
1.0
|
NC
|
H:HEM150
|
2.0
|
22.6
|
1.0
|
NB
|
H:HEM150
|
2.1
|
23.8
|
1.0
|
ND
|
H:HEM150
|
2.1
|
24.7
|
1.0
|
NA
|
H:HEM150
|
2.1
|
26.4
|
1.0
|
SD
|
H:MET7
|
2.4
|
25.1
|
1.0
|
CD2
|
H:HIS102
|
3.0
|
32.0
|
1.0
|
CE1
|
H:HIS102
|
3.0
|
32.7
|
1.0
|
C1C
|
H:HEM150
|
3.0
|
22.2
|
1.0
|
C4C
|
H:HEM150
|
3.1
|
23.7
|
1.0
|
C4D
|
H:HEM150
|
3.1
|
26.0
|
1.0
|
C4B
|
H:HEM150
|
3.1
|
23.0
|
1.0
|
C1A
|
H:HEM150
|
3.1
|
27.6
|
1.0
|
C1D
|
H:HEM150
|
3.1
|
24.1
|
1.0
|
C1B
|
H:HEM150
|
3.1
|
24.7
|
1.0
|
C4A
|
H:HEM150
|
3.1
|
27.1
|
1.0
|
CE
|
H:MET7
|
3.4
|
28.8
|
1.0
|
CHA
|
H:HEM150
|
3.4
|
26.1
|
1.0
|
CHC
|
H:HEM150
|
3.4
|
22.4
|
1.0
|
CHD
|
H:HEM150
|
3.4
|
24.3
|
1.0
|
CHB
|
H:HEM150
|
3.5
|
26.6
|
1.0
|
CG
|
H:MET7
|
3.5
|
29.3
|
1.0
|
ND1
|
H:HIS102
|
4.1
|
32.4
|
1.0
|
CG
|
H:HIS102
|
4.1
|
32.0
|
1.0
|
C2C
|
H:HEM150
|
4.3
|
23.0
|
1.0
|
C3C
|
H:HEM150
|
4.3
|
23.2
|
1.0
|
C3B
|
H:HEM150
|
4.3
|
22.6
|
1.0
|
CB
|
H:MET7
|
4.3
|
29.8
|
1.0
|
C2B
|
H:HEM150
|
4.3
|
21.6
|
1.0
|
C3D
|
H:HEM150
|
4.3
|
27.2
|
1.0
|
C2A
|
H:HEM150
|
4.3
|
30.1
|
1.0
|
C2D
|
H:HEM150
|
4.3
|
25.4
|
1.0
|
C3A
|
H:HEM150
|
4.3
|
28.3
|
1.0
|
|
Reference:
E.N.Salgado,
X.I.Ambroggio,
J.D.Brodin,
R.A.Lewis,
B.Kuhlman,
F.A.Tezcan.
Metal Templated Design of Protein Interfaces. Proc.Natl.Acad.Sci.Usa V. 107 1827 2010.
ISSN: ISSN 0027-8424
PubMed: 20080561
DOI: 10.1073/PNAS.0906852107
Page generated: Sun Aug 4 11:31:36 2024
|