Iron in PDB 3hpv: Crystal Structure Analysis of the 2,3-Dioxygenase Lapb From Pseudomonas Sp. KL28

All present enzymatic activity of Crystal Structure Analysis of the 2,3-Dioxygenase Lapb From Pseudomonas Sp. KL28:
1.13.11.2;

The structure of Crystal Structure Analysis of the 2,3-Dioxygenase Lapb From Pseudomonas Sp. KL28, PDB code: 3hpv was solved by J.-H.Cho, S.Rhee, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.71 / 2.30
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	94.900, 97.000, 133.400, 90.00, 90.00, 90.00
R / Rfree (%)	20.1 / 26.9

The binding sites of Iron atom in the Crystal Structure Analysis of the 2,3-Dioxygenase Lapb From Pseudomonas Sp. KL28 (pdb code 3hpv). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Crystal Structure Analysis of the 2,3-Dioxygenase Lapb From Pseudomonas Sp. KL28, PDB code: 3hpv:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in the Crystal Structure Analysis of the 2,3-Dioxygenase Lapb From Pseudomonas Sp. KL28


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure Analysis of the 2,3-Dioxygenase Lapb From Pseudomonas Sp. KL28 within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe310 b:27.6 occ:1.00 OE1 A:GLU267 2.0 29.3 1.0 NE2 A:HIS154 2.3 17.5 1.0 NE2 A:HIS216 2.4 15.5 1.0 O A:HOH329 2.9 26.6 1.0 CD A:GLU267 3.0 22.4 1.0 CE1 A:HIS216 3.1 13.9 1.0 CE1 A:HIS154 3.2 14.2 1.0 CD2 A:HIS154 3.4 17.4 1.0 OE2 A:GLU267 3.4 18.4 1.0 CD2 A:HIS216 3.6 17.7 1.0 CB A:SER218 4.1 24.3 1.0 OH A:TYR257 4.1 30.8 1.0 NE2 A:HIS201 4.1 25.4 1.0 OG A:SER218 4.2 23.6 1.0 ND1 A:HIS154 4.3 17.8 1.0 CG A:GLU267 4.3 16.5 1.0 ND1 A:HIS216 4.4 19.9 1.0 CG A:HIS154 4.5 18.4 1.0 CE1 A:HIS201 4.5 28.6 1.0 CG A:HIS216 4.6 15.0 1.0 CB A:GLU267 4.7 15.0 1.0 CE1 A:HIS248 4.8 79.0 1.0 CE1 A:TYR257 4.8 33.3 1.0 CZ A:TYR257 4.8 30.8 1.0

Iron binding site 2 out of 4 in the Crystal Structure Analysis of the 2,3-Dioxygenase Lapb From Pseudomonas Sp. KL28


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure Analysis of the 2,3-Dioxygenase Lapb From Pseudomonas Sp. KL28 within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe310 b:25.5 occ:1.00 O B:HOH330 2.1 21.7 1.0 OE1 B:GLU267 2.2 19.5 1.0 NE2 B:HIS216 2.2 12.5 1.0 NE2 B:HIS154 2.3 18.7 1.0 O B:HOH375 2.6 28.6 1.0 CE1 B:HIS216 3.0 7.6 1.0 CD B:GLU267 3.0 18.7 1.0 CE1 B:HIS154 3.2 12.3 1.0 OE2 B:GLU267 3.2 14.2 1.0 CD2 B:HIS154 3.3 13.1 1.0 CD2 B:HIS216 3.3 12.0 1.0 O B:HOH348 3.9 24.7 1.0 OG B:SER218 3.9 18.9 1.0 CB B:SER218 3.9 16.4 1.0 NE2 B:HIS201 4.1 18.7 1.0 ND1 B:HIS216 4.2 15.0 1.0 OH B:TYR257 4.2 36.0 1.0 ND1 B:HIS154 4.3 15.9 1.0 CG B:GLU267 4.4 11.6 1.0 CG B:HIS216 4.4 11.6 1.0 CG B:HIS154 4.4 17.7 1.0 CE1 B:TYR257 4.7 27.4 1.0 CB B:GLU267 4.7 17.3 1.0 CE1 B:HIS201 4.7 22.3 1.0 CZ B:TYR257 4.9 29.0 1.0

Iron binding site 3 out of 4 in the Crystal Structure Analysis of the 2,3-Dioxygenase Lapb From Pseudomonas Sp. KL28


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure Analysis of the 2,3-Dioxygenase Lapb From Pseudomonas Sp. KL28 within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe310 b:29.0 occ:1.00 O C:HOH331 2.2 25.6 1.0 OE1 C:GLU267 2.3 24.8 1.0 NE2 C:HIS216 2.3 27.0 1.0 NE2 C:HIS154 2.4 17.9 1.0 CD C:GLU267 3.1 22.5 1.0 OE2 C:GLU267 3.2 21.5 1.0 CE1 C:HIS216 3.2 25.4 1.0 CE1 C:HIS154 3.3 22.1 1.0 CD2 C:HIS216 3.4 27.4 1.0 CD2 C:HIS154 3.5 17.2 1.0 OH C:TYR257 3.7 53.5 1.0 CB C:SER218 4.0 27.6 1.0 O C:HOH379 4.1 32.5 1.0 NE2 C:HIS201 4.2 21.7 1.0 OG C:SER218 4.2 28.2 1.0 ND1 C:HIS216 4.4 28.1 1.0 ND1 C:HIS154 4.4 24.2 1.0 CG C:GLU267 4.5 25.1 1.0 CE1 C:TYR257 4.5 46.9 1.0 CE1 C:HIS201 4.5 26.2 1.0 CG C:HIS216 4.5 26.3 1.0 CZ C:TYR257 4.5 49.6 1.0 CG C:HIS154 4.6 24.7 1.0 CB C:GLU267 4.8 24.0 1.0 CE1 C:HIS248 4.8 56.5 1.0

Iron binding site 4 out of 4 in the Crystal Structure Analysis of the 2,3-Dioxygenase Lapb From Pseudomonas Sp. KL28


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure Analysis of the 2,3-Dioxygenase Lapb From Pseudomonas Sp. KL28 within 5.0Å range: probe atom residue distance (Å) B Occ D:Fe310 b:33.6 occ:1.00 OE1 D:GLU267 2.2 30.4 1.0 NE2 D:HIS216 2.3 21.2 1.0 NE2 D:HIS154 2.3 19.1 1.0 O D:HOH332 2.3 19.6 1.0 CE1 D:HIS216 2.9 18.2 1.0 CE1 D:HIS154 2.9 17.3 1.0 CD D:GLU267 3.0 24.6 1.0 OE2 D:GLU267 3.1 18.1 1.0 CD2 D:HIS216 3.5 22.3 1.0 CD2 D:HIS154 3.5 15.9 1.0 OH D:TYR257 3.7 37.2 1.0 O D:HOH340 4.0 23.7 1.0 CB D:SER218 4.1 25.0 1.0 ND1 D:HIS216 4.1 20.3 1.0 ND1 D:HIS154 4.2 18.3 1.0 OG D:SER218 4.3 25.9 1.0 NE2 D:HIS201 4.3 25.2 1.0 CG D:GLU267 4.4 30.9 1.0 CG D:HIS216 4.4 20.7 1.0 CG D:HIS154 4.5 17.8 1.0 CE1 D:TYR257 4.5 39.7 1.0 CZ D:TYR257 4.6 40.1 1.0 CE1 D:HIS201 4.6 25.5 1.0 CB D:GLU267 4.8 28.0 1.0 CE1 D:HIS248 4.8 58.5 1.0

J.-H.Cho, D.-K.Jung, K.Lee, S.Rhee. Crystal Structure and Functional Analysis of the Extradiol Dioxygenase Lapb From A Long-Chain Alkylphenol Degradation Pathway in Pseudomonas J.Biol.Chem. V. 284 34321 2009.
ISSN: ISSN 0021-9258
PubMed: 19828456
DOI: 10.1074/JBC.M109.031054