Atomistry » Iron » PDB 3hnj-3i8r » 3hpy
Atomistry »
  Iron »
    PDB 3hnj-3i8r »
      3hpy »

Iron in PDB 3hpy: Crystal Structure Analysis of the 2,3-Dioxygenase Lapb From Pseudomonas in the Complex with 4-Methylcatechol

Enzymatic activity of Crystal Structure Analysis of the 2,3-Dioxygenase Lapb From Pseudomonas in the Complex with 4-Methylcatechol

All present enzymatic activity of Crystal Structure Analysis of the 2,3-Dioxygenase Lapb From Pseudomonas in the Complex with 4-Methylcatechol:
1.13.11.2;

Protein crystallography data

The structure of Crystal Structure Analysis of the 2,3-Dioxygenase Lapb From Pseudomonas in the Complex with 4-Methylcatechol, PDB code: 3hpy was solved by J.-H.Cho, S.Rhee, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.94
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 96.100, 97.600, 133.700, 90.00, 90.00, 90.00
R / Rfree (%) 24.4 / 27.8

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure Analysis of the 2,3-Dioxygenase Lapb From Pseudomonas in the Complex with 4-Methylcatechol (pdb code 3hpy). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Crystal Structure Analysis of the 2,3-Dioxygenase Lapb From Pseudomonas in the Complex with 4-Methylcatechol, PDB code: 3hpy:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 3hpy

Go back to Iron Binding Sites List in 3hpy
Iron binding site 1 out of 4 in the Crystal Structure Analysis of the 2,3-Dioxygenase Lapb From Pseudomonas in the Complex with 4-Methylcatechol


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure Analysis of the 2,3-Dioxygenase Lapb From Pseudomonas in the Complex with 4-Methylcatechol within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe310

b:33.5
occ:1.00
 O3 A:MCT311 2.0 51.7 1.0
NE2 A:HIS154 2.3 19.3 1.0
OE1 A:GLU267 2.3 23.8 1.0
NE2 A:HIS216 2.4 14.8 1.0
O4 A:MCT311 2.9 51.9 1.0
CD A:GLU267 3.0 23.6 1.0
C3 A:MCT311 3.1 52.5 1.0
CE1 A:HIS216 3.1 16.2 1.0
CE1 A:HIS154 3.2 19.8 1.0
CD2 A:HIS154 3.3 18.9 1.0
OE2 A:GLU267 3.3 23.9 1.0
C4 A:MCT311 3.4 51.7 1.0
CD2 A:HIS216 3.5 18.4 1.0
CB A:SER218 3.8 20.4 1.0
OG A:SER218 3.9 21.8 1.0
NE2 A:HIS201 4.1 27.2 1.0
OH A:TYR257 4.1 26.0 1.0
CG A:GLU267 4.3 22.3 1.0
C2 A:MCT311 4.3 52.3 1.0
ND1 A:HIS154 4.3 18.3 1.0
ND1 A:HIS216 4.3 15.8 1.0
CB A:GLU267 4.4 20.6 1.0
CG A:HIS154 4.4 18.3 1.0
CG A:HIS216 4.6 17.1 1.0
CE1 A:TYR257 4.6 26.1 1.0
NE2 A:HIS248 4.8 40.5 1.0
C5 A:MCT311 4.8 51.3 1.0
CZ A:TYR257 4.9 25.6 1.0

Iron binding site 2 out of 4 in 3hpy

Go back to Iron Binding Sites List in 3hpy
Iron binding site 2 out of 4 in the Crystal Structure Analysis of the 2,3-Dioxygenase Lapb From Pseudomonas in the Complex with 4-Methylcatechol


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure Analysis of the 2,3-Dioxygenase Lapb From Pseudomonas in the Complex with 4-Methylcatechol within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe310

b:29.8
occ:1.00
 O3 B:MCT311 1.9 46.1 1.0
OE1 B:GLU267 2.1 20.8 1.0
NE2 B:HIS154 2.2 20.6 1.0
NE2 B:HIS216 2.4 18.1 1.0
O4 B:MCT311 2.8 42.3 1.0
C3 B:MCT311 2.9 45.0 1.0
CD B:GLU267 2.9 20.1 1.0
CE1 B:HIS216 3.2 19.0 1.0
CD2 B:HIS154 3.2 22.2 1.0
OE2 B:GLU267 3.2 20.4 1.0
CE1 B:HIS154 3.2 20.9 1.0
C4 B:MCT311 3.3 44.3 1.0
CD2 B:HIS216 3.5 19.1 1.0
CB B:SER218 4.0 21.6 1.0
NE2 B:HIS201 4.1 32.3 1.0
OG B:SER218 4.1 21.0 1.0
C2 B:MCT311 4.2 46.7 1.0
CG B:GLU267 4.2 18.4 1.0
ND1 B:HIS154 4.3 22.6 1.0
CG B:HIS154 4.3 21.6 1.0
ND1 B:HIS216 4.4 19.1 1.0
OH B:TYR257 4.5 26.8 1.0
CB B:GLU267 4.5 18.9 1.0
CG B:HIS216 4.5 19.2 1.0
C5 B:MCT311 4.7 43.9 1.0
CE1 B:TYR257 4.7 26.6 1.0
CE1 B:HIS201 4.8 32.8 1.0
NE2 B:HIS248 5.0 38.5 1.0
CB B:LEU156 5.0 25.0 1.0

Iron binding site 3 out of 4 in 3hpy

Go back to Iron Binding Sites List in 3hpy
Iron binding site 3 out of 4 in the Crystal Structure Analysis of the 2,3-Dioxygenase Lapb From Pseudomonas in the Complex with 4-Methylcatechol


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure Analysis of the 2,3-Dioxygenase Lapb From Pseudomonas in the Complex with 4-Methylcatechol within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe310

b:31.1
occ:1.00
 O3 C:MCT311 1.9 51.7 1.0
O4 C:MCT311 2.1 50.2 1.0
OE1 C:GLU267 2.2 27.3 1.0
NE2 C:HIS216 2.3 22.0 1.0
NE2 C:HIS154 2.4 30.8 1.0
C3 C:MCT311 2.6 50.3 1.0
C4 C:MCT311 2.7 50.3 1.0
CD C:GLU267 2.9 27.4 1.0
OE2 C:GLU267 3.1 26.4 1.0
CE1 C:HIS216 3.2 20.9 1.0
CE1 C:HIS154 3.3 29.7 1.0
CD2 C:HIS154 3.4 30.1 1.0
CD2 C:HIS216 3.4 21.4 1.0
CB C:SER218 3.9 26.1 1.0
C2 C:MCT311 4.0 50.0 1.0
OG C:SER218 4.1 23.8 1.0
OH C:TYR257 4.1 30.7 1.0
C5 C:MCT311 4.1 50.0 1.0
NE2 C:HIS201 4.3 38.1 1.0
CG C:GLU267 4.3 24.6 1.0
ND1 C:HIS216 4.4 21.9 1.0
ND1 C:HIS154 4.4 30.0 1.0
CG C:HIS154 4.5 28.1 1.0
CG C:HIS216 4.5 20.6 1.0
CB C:GLU267 4.6 24.4 1.0
CE1 C:TYR257 4.6 29.9 1.0
CE1 C:HIS248 4.8 38.0 1.0
CZ C:TYR257 4.9 31.4 1.0
CE1 C:HIS201 5.0 38.8 1.0

Iron binding site 4 out of 4 in 3hpy

Go back to Iron Binding Sites List in 3hpy
Iron binding site 4 out of 4 in the Crystal Structure Analysis of the 2,3-Dioxygenase Lapb From Pseudomonas in the Complex with 4-Methylcatechol


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure Analysis of the 2,3-Dioxygenase Lapb From Pseudomonas in the Complex with 4-Methylcatechol within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe310

b:59.6
occ:1.00
 NE2 D:HIS154 2.0 22.3 1.0
NE2 D:HIS216 2.2 19.2 1.0
OE1 D:GLU267 2.4 33.1 1.0
CD2 D:HIS154 2.6 26.1 1.0
CE1 D:HIS216 3.0 20.5 1.0
CE1 D:HIS154 3.2 23.9 1.0
CD2 D:HIS216 3.2 22.5 1.0
CB D:SER218 3.2 22.4 1.0
CD D:GLU267 3.4 30.3 1.0
OG D:SER218 3.8 21.0 1.0
CG D:HIS154 3.8 26.6 1.0
OE2 D:GLU267 4.0 31.4 1.0
ND1 D:HIS154 4.0 27.1 1.0
ND1 D:HIS216 4.2 20.4 1.0
CG D:HIS216 4.3 22.3 1.0
CB D:GLU267 4.4 26.2 1.0
NE2 D:HIS201 4.4 36.3 1.0
CA D:SER218 4.5 21.9 1.0
CG D:GLU267 4.5 28.5 1.0
N D:SER218 4.6 22.4 1.0
CB D:LEU156 4.8 27.7 1.0
N D:LEU156 4.9 25.3 1.0
OH D:TYR257 5.0 31.3 1.0
C D:CYS155 5.0 26.9 1.0

Reference:

J.-H.Cho, D.-K.Jung, K.Lee, S.Rhee. Crystal Structure and Functional Analysis of the Extradiol Dioxygenase Lapb From A Long-Chain Alkylphenol Degradation Pathway in Pseudomonas J.Biol.Chem. V. 284 34321 2009.
ISSN: ISSN 0021-9258
PubMed: 19828456
DOI: 10.1074/JBC.M109.031054
Page generated: Sun Aug 4 11:42:54 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy