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Iron in PDB 3hrd: Crystal Structure of Nicotinate Dehydrogenase
Protein crystallography data
The structure of Crystal Structure of Nicotinate Dehydrogenase, PDB code: 3hrd
was solved by
N.Wagener,
A.J.Pierik,
R.Hille,
H.Dobbek,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 29.43 / 2.20 |
| Space group | P 1 21 1 |
| Cell size a, b, c (Å), α, β, γ (°) | 97.069, 71.700, 214.485, 90.00, 90.23, 90.00 |
| R / Rfree (%) | 21.3 / 25.1 |
Other elements in 3hrd:
The structure of Crystal Structure of Nicotinate Dehydrogenase also contains other interesting chemical elements:
| Molybdenum | (Mo) | 2 atoms |
| Magnesium | (Mg) | 2 atoms |
| Calcium | (Ca) | 1 atom |
Iron Binding Sites:
The binding sites of Iron atom in the Crystal Structure of Nicotinate Dehydrogenase
(pdb code 3hrd). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the Crystal Structure of Nicotinate Dehydrogenase, PDB code: 3hrd:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8;
In total 8 binding sites of Iron where determined in the Crystal Structure of Nicotinate Dehydrogenase, PDB code: 3hrd:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8;
Iron binding site 1 out of 8 in 3hrd
Go back to
Iron Binding Sites List in 3hrd
Iron binding site 1 out
of 8 in the Crystal Structure of Nicotinate Dehydrogenase
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Crystal Structure of Nicotinate Dehydrogenase within 5.0Å range:
|
Iron binding site 2 out of 8 in 3hrd
Go back to
Iron Binding Sites List in 3hrd
Iron binding site 2 out
of 8 in the Crystal Structure of Nicotinate Dehydrogenase
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Crystal Structure of Nicotinate Dehydrogenase within 5.0Å range:
|
Iron binding site 3 out of 8 in 3hrd
Go back to
Iron Binding Sites List in 3hrd
Iron binding site 3 out
of 8 in the Crystal Structure of Nicotinate Dehydrogenase
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Crystal Structure of Nicotinate Dehydrogenase within 5.0Å range:
|
Iron binding site 4 out of 8 in 3hrd
Go back to
Iron Binding Sites List in 3hrd
Iron binding site 4 out
of 8 in the Crystal Structure of Nicotinate Dehydrogenase
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Crystal Structure of Nicotinate Dehydrogenase within 5.0Å range:
|
Iron binding site 5 out of 8 in 3hrd
Go back to
Iron Binding Sites List in 3hrd
Iron binding site 5 out
of 8 in the Crystal Structure of Nicotinate Dehydrogenase
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Crystal Structure of Nicotinate Dehydrogenase within 5.0Å range:
|
Iron binding site 6 out of 8 in 3hrd
Go back to
Iron Binding Sites List in 3hrd
Iron binding site 6 out
of 8 in the Crystal Structure of Nicotinate Dehydrogenase
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Crystal Structure of Nicotinate Dehydrogenase within 5.0Å range:
|
Iron binding site 7 out of 8 in 3hrd
Go back to
Iron Binding Sites List in 3hrd
Iron binding site 7 out
of 8 in the Crystal Structure of Nicotinate Dehydrogenase
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Crystal Structure of Nicotinate Dehydrogenase within 5.0Å range:
|
Iron binding site 8 out of 8 in 3hrd
Go back to
Iron Binding Sites List in 3hrd
Iron binding site 8 out
of 8 in the Crystal Structure of Nicotinate Dehydrogenase
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Crystal Structure of Nicotinate Dehydrogenase within 5.0Å range:
|
Reference:
N.Wagener,
A.J.Pierik,
A.Ibdah,
R.Hille,
H.Dobbek.
The Mo-Se Active Site of Nicotinate Dehydrogenase Proc.Natl.Acad.Sci.Usa V. 106 11055 2009.
ISSN: ISSN 0027-8424
PubMed: 19549881
DOI: 10.1073/PNAS.0902210106
Page generated: Sun Dec 13 15:08:03 2020
ISSN: ISSN 0027-8424
PubMed: 19549881
DOI: 10.1073/PNAS.0902210106
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