Iron in PDB 3hrw: Crystal Structure of Hemoglobin From Mouse (Mus Musculus)at 2.8
Protein crystallography data
The structure of Crystal Structure of Hemoglobin From Mouse (Mus Musculus)at 2.8, PDB code: 3hrw
was solved by
S.S.Sundaresan,
P.Ramesh,
M.N.Ponnuswamy,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
19.94 /
2.80
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
53.081,
65.940,
150.931,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
24.3 /
30.6
|
Iron Binding Sites:
The binding sites of Iron atom in the Crystal Structure of Hemoglobin From Mouse (Mus Musculus)at 2.8
(pdb code 3hrw). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the
Crystal Structure of Hemoglobin From Mouse (Mus Musculus)at 2.8, PDB code: 3hrw:
Jump to Iron binding site number:
1;
2;
3;
4;
Iron binding site 1 out
of 4 in 3hrw
Go back to
Iron Binding Sites List in 3hrw
Iron binding site 1 out
of 4 in the Crystal Structure of Hemoglobin From Mouse (Mus Musculus)at 2.8
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Crystal Structure of Hemoglobin From Mouse (Mus Musculus)at 2.8 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe200
b:28.1
occ:1.00
|
FE
|
A:HEM200
|
0.0
|
28.1
|
1.0
|
O
|
A:HOH144
|
1.8
|
28.7
|
1.0
|
NC
|
A:HEM200
|
2.0
|
28.2
|
1.0
|
NB
|
A:HEM200
|
2.0
|
27.9
|
1.0
|
ND
|
A:HEM200
|
2.0
|
29.7
|
1.0
|
NE2
|
A:HIS87
|
2.1
|
44.8
|
1.0
|
NA
|
A:HEM200
|
2.1
|
28.0
|
1.0
|
C4C
|
A:HEM200
|
3.0
|
28.1
|
1.0
|
CD2
|
A:HIS87
|
3.0
|
44.4
|
1.0
|
C1D
|
A:HEM200
|
3.0
|
30.6
|
1.0
|
C1C
|
A:HEM200
|
3.0
|
28.1
|
1.0
|
C1B
|
A:HEM200
|
3.0
|
27.7
|
1.0
|
C4B
|
A:HEM200
|
3.0
|
28.3
|
1.0
|
C4A
|
A:HEM200
|
3.1
|
28.9
|
1.0
|
C4D
|
A:HEM200
|
3.1
|
29.8
|
1.0
|
C1A
|
A:HEM200
|
3.1
|
28.8
|
1.0
|
CE1
|
A:HIS87
|
3.2
|
44.5
|
1.0
|
CHD
|
A:HEM200
|
3.3
|
29.2
|
1.0
|
CHB
|
A:HEM200
|
3.4
|
28.6
|
1.0
|
CHC
|
A:HEM200
|
3.4
|
28.1
|
1.0
|
CHA
|
A:HEM200
|
3.5
|
29.0
|
1.0
|
CG
|
A:HIS87
|
4.2
|
44.0
|
1.0
|
NE2
|
A:HIS58
|
4.2
|
29.1
|
1.0
|
C3C
|
A:HEM200
|
4.2
|
28.6
|
1.0
|
ND1
|
A:HIS87
|
4.2
|
43.2
|
1.0
|
C2C
|
A:HEM200
|
4.2
|
28.2
|
1.0
|
C2B
|
A:HEM200
|
4.3
|
27.2
|
1.0
|
C3B
|
A:HEM200
|
4.3
|
27.9
|
1.0
|
C3A
|
A:HEM200
|
4.3
|
30.2
|
1.0
|
C2D
|
A:HEM200
|
4.3
|
31.4
|
1.0
|
C2A
|
A:HEM200
|
4.3
|
29.9
|
1.0
|
C3D
|
A:HEM200
|
4.3
|
31.2
|
1.0
|
CE1
|
A:HIS58
|
4.5
|
29.2
|
1.0
|
|
Iron binding site 2 out
of 4 in 3hrw
Go back to
Iron Binding Sites List in 3hrw
Iron binding site 2 out
of 4 in the Crystal Structure of Hemoglobin From Mouse (Mus Musculus)at 2.8
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Crystal Structure of Hemoglobin From Mouse (Mus Musculus)at 2.8 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe200
b:34.1
occ:1.00
|
FE
|
B:HEM200
|
0.0
|
34.1
|
1.0
|
NE2
|
B:HIS92
|
1.8
|
49.7
|
1.0
|
NC
|
B:HEM200
|
1.9
|
33.8
|
1.0
|
NB
|
B:HEM200
|
2.1
|
34.2
|
1.0
|
NA
|
B:HEM200
|
2.1
|
34.6
|
1.0
|
ND
|
B:HEM200
|
2.2
|
34.8
|
1.0
|
CE1
|
B:HIS92
|
2.7
|
49.2
|
1.0
|
CD2
|
B:HIS92
|
2.8
|
50.1
|
1.0
|
C1C
|
B:HEM200
|
2.9
|
34.2
|
1.0
|
C4C
|
B:HEM200
|
2.9
|
34.1
|
1.0
|
C4B
|
B:HEM200
|
3.1
|
34.2
|
1.0
|
C4A
|
B:HEM200
|
3.1
|
34.6
|
1.0
|
C1A
|
B:HEM200
|
3.1
|
35.4
|
1.0
|
C1B
|
B:HEM200
|
3.1
|
34.2
|
1.0
|
C1D
|
B:HEM200
|
3.1
|
34.4
|
1.0
|
C4D
|
B:HEM200
|
3.2
|
34.4
|
1.0
|
CHC
|
B:HEM200
|
3.3
|
34.1
|
1.0
|
CHD
|
B:HEM200
|
3.4
|
33.9
|
1.0
|
CHB
|
B:HEM200
|
3.5
|
34.3
|
1.0
|
CHA
|
B:HEM200
|
3.5
|
34.8
|
1.0
|
ND1
|
B:HIS92
|
3.8
|
49.4
|
1.0
|
CE1
|
B:HIS63
|
3.8
|
35.4
|
1.0
|
CG
|
B:HIS92
|
3.8
|
50.3
|
1.0
|
NE2
|
B:HIS63
|
3.9
|
35.0
|
1.0
|
C2C
|
B:HEM200
|
4.1
|
34.4
|
1.0
|
C3C
|
B:HEM200
|
4.1
|
34.6
|
1.0
|
CG2
|
B:VAL67
|
4.2
|
34.0
|
1.0
|
C3A
|
B:HEM200
|
4.3
|
35.4
|
1.0
|
C2A
|
B:HEM200
|
4.3
|
35.9
|
1.0
|
C2B
|
B:HEM200
|
4.3
|
34.3
|
1.0
|
C3B
|
B:HEM200
|
4.3
|
34.1
|
1.0
|
C2D
|
B:HEM200
|
4.4
|
33.8
|
1.0
|
C3D
|
B:HEM200
|
4.4
|
33.8
|
1.0
|
|
Iron binding site 3 out
of 4 in 3hrw
Go back to
Iron Binding Sites List in 3hrw
Iron binding site 3 out
of 4 in the Crystal Structure of Hemoglobin From Mouse (Mus Musculus)at 2.8
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Crystal Structure of Hemoglobin From Mouse (Mus Musculus)at 2.8 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe200
b:34.9
occ:1.00
|
FE
|
C:HEM200
|
0.0
|
34.9
|
1.0
|
NE2
|
C:HIS87
|
1.9
|
37.5
|
1.0
|
ND
|
C:HEM200
|
2.0
|
33.7
|
1.0
|
NC
|
C:HEM200
|
2.1
|
33.8
|
1.0
|
NB
|
C:HEM200
|
2.1
|
32.8
|
1.0
|
NA
|
C:HEM200
|
2.1
|
35.5
|
1.0
|
O
|
C:HOH144
|
2.5
|
11.4
|
1.0
|
CE1
|
C:HIS87
|
2.9
|
36.9
|
1.0
|
CD2
|
C:HIS87
|
3.0
|
37.9
|
1.0
|
C4D
|
C:HEM200
|
3.0
|
34.0
|
1.0
|
C1C
|
C:HEM200
|
3.0
|
33.5
|
1.0
|
C4B
|
C:HEM200
|
3.1
|
33.0
|
1.0
|
C1D
|
C:HEM200
|
3.1
|
33.4
|
1.0
|
C1A
|
C:HEM200
|
3.1
|
36.1
|
1.0
|
C4C
|
C:HEM200
|
3.1
|
32.6
|
1.0
|
C4A
|
C:HEM200
|
3.1
|
36.4
|
1.0
|
C1B
|
C:HEM200
|
3.1
|
33.6
|
1.0
|
CHA
|
C:HEM200
|
3.3
|
35.2
|
1.0
|
CHC
|
C:HEM200
|
3.3
|
33.5
|
1.0
|
CHD
|
C:HEM200
|
3.5
|
32.9
|
1.0
|
CHB
|
C:HEM200
|
3.5
|
35.4
|
1.0
|
ND1
|
C:HIS87
|
4.0
|
37.2
|
1.0
|
NE2
|
C:HIS58
|
4.0
|
45.4
|
1.0
|
CG
|
C:HIS87
|
4.1
|
38.9
|
1.0
|
C3D
|
C:HEM200
|
4.3
|
33.1
|
1.0
|
C2C
|
C:HEM200
|
4.3
|
32.3
|
1.0
|
C2D
|
C:HEM200
|
4.3
|
33.7
|
1.0
|
C3B
|
C:HEM200
|
4.3
|
32.9
|
1.0
|
C3C
|
C:HEM200
|
4.3
|
31.9
|
1.0
|
C3A
|
C:HEM200
|
4.3
|
37.2
|
1.0
|
C2A
|
C:HEM200
|
4.3
|
37.5
|
1.0
|
C2B
|
C:HEM200
|
4.3
|
33.2
|
1.0
|
CE1
|
C:HIS58
|
4.5
|
45.1
|
1.0
|
CD2
|
C:LEU91
|
5.0
|
33.8
|
1.0
|
|
Iron binding site 4 out
of 4 in 3hrw
Go back to
Iron Binding Sites List in 3hrw
Iron binding site 4 out
of 4 in the Crystal Structure of Hemoglobin From Mouse (Mus Musculus)at 2.8
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Crystal Structure of Hemoglobin From Mouse (Mus Musculus)at 2.8 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe200
b:25.4
occ:1.00
|
FE
|
D:HEM200
|
0.0
|
25.4
|
1.0
|
NA
|
D:HEM200
|
2.0
|
23.6
|
1.0
|
NC
|
D:HEM200
|
2.1
|
22.4
|
1.0
|
NB
|
D:HEM200
|
2.1
|
23.9
|
1.0
|
ND
|
D:HEM200
|
2.1
|
23.9
|
1.0
|
NE2
|
D:HIS92
|
2.2
|
37.0
|
1.0
|
O
|
D:HOH147
|
2.6
|
13.8
|
1.0
|
CE1
|
D:HIS92
|
2.9
|
36.9
|
1.0
|
C4A
|
D:HEM200
|
3.0
|
23.5
|
1.0
|
C1B
|
D:HEM200
|
3.0
|
24.5
|
1.0
|
C4C
|
D:HEM200
|
3.0
|
21.1
|
1.0
|
C1D
|
D:HEM200
|
3.1
|
23.1
|
1.0
|
C1A
|
D:HEM200
|
3.1
|
23.8
|
1.0
|
C1C
|
D:HEM200
|
3.1
|
22.6
|
1.0
|
C4B
|
D:HEM200
|
3.1
|
23.7
|
1.0
|
C4D
|
D:HEM200
|
3.2
|
24.7
|
1.0
|
CD2
|
D:HIS92
|
3.3
|
35.8
|
1.0
|
CHB
|
D:HEM200
|
3.3
|
23.4
|
1.0
|
CHD
|
D:HEM200
|
3.4
|
21.6
|
1.0
|
CHA
|
D:HEM200
|
3.5
|
24.3
|
1.0
|
CHC
|
D:HEM200
|
3.5
|
22.2
|
1.0
|
CE1
|
D:HIS63
|
3.7
|
39.2
|
1.0
|
CG2
|
D:VAL67
|
3.9
|
39.3
|
1.0
|
ND1
|
D:HIS92
|
4.1
|
35.8
|
1.0
|
C3A
|
D:HEM200
|
4.2
|
23.7
|
1.0
|
CG
|
D:HIS92
|
4.3
|
35.6
|
1.0
|
C2A
|
D:HEM200
|
4.3
|
23.1
|
1.0
|
C2B
|
D:HEM200
|
4.3
|
23.3
|
1.0
|
C3C
|
D:HEM200
|
4.3
|
22.4
|
1.0
|
C2D
|
D:HEM200
|
4.3
|
23.7
|
1.0
|
C2C
|
D:HEM200
|
4.3
|
21.4
|
1.0
|
C3B
|
D:HEM200
|
4.3
|
23.4
|
1.0
|
C3D
|
D:HEM200
|
4.4
|
24.8
|
1.0
|
NE2
|
D:HIS63
|
4.4
|
39.6
|
1.0
|
ND1
|
D:HIS63
|
4.8
|
39.5
|
1.0
|
|
Reference:
S.S.Sundaresan,
P.Ramesh,
M.N.Ponnuswamy.
Crystal Structure of Hemoglobin From Mouse (Mus Musculus)at 2.8 To Be Published.
Page generated: Sun Aug 4 11:45:33 2024
|