Iron in PDB 3hxn: The Structure of Human Carbonmonoxyhemoglobin Complex to Ihp at 2.0 Angstrons Resolution.
Protein crystallography data
The structure of The Structure of Human Carbonmonoxyhemoglobin Complex to Ihp at 2.0 Angstrons Resolution., PDB code: 3hxn
was solved by
M.F.Colombo,
F.A.V.Seixas,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
10.00 /
2.00
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
54.524,
79.959,
62.241,
90.00,
98.06,
90.00
|
R / Rfree (%)
|
22.5 /
28.3
|
Iron Binding Sites:
The binding sites of Iron atom in the The Structure of Human Carbonmonoxyhemoglobin Complex to Ihp at 2.0 Angstrons Resolution.
(pdb code 3hxn). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the
The Structure of Human Carbonmonoxyhemoglobin Complex to Ihp at 2.0 Angstrons Resolution., PDB code: 3hxn:
Jump to Iron binding site number:
1;
2;
3;
4;
Iron binding site 1 out
of 4 in 3hxn
Go back to
Iron Binding Sites List in 3hxn
Iron binding site 1 out
of 4 in the The Structure of Human Carbonmonoxyhemoglobin Complex to Ihp at 2.0 Angstrons Resolution.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of The Structure of Human Carbonmonoxyhemoglobin Complex to Ihp at 2.0 Angstrons Resolution. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe142
b:25.7
occ:1.00
|
FE
|
A:HEM142
|
0.0
|
25.7
|
1.0
|
C
|
A:CMO143
|
1.6
|
23.7
|
1.0
|
NC
|
A:HEM142
|
1.9
|
21.8
|
1.0
|
ND
|
A:HEM142
|
1.9
|
25.2
|
1.0
|
NA
|
A:HEM142
|
1.9
|
22.9
|
1.0
|
NB
|
A:HEM142
|
2.0
|
22.8
|
1.0
|
NE2
|
A:HIS87
|
2.5
|
19.9
|
1.0
|
O
|
A:CMO143
|
2.7
|
30.1
|
1.0
|
C4C
|
A:HEM142
|
2.9
|
20.7
|
1.0
|
C1C
|
A:HEM142
|
2.9
|
20.2
|
1.0
|
C4D
|
A:HEM142
|
3.0
|
26.4
|
1.0
|
C4B
|
A:HEM142
|
3.0
|
20.1
|
1.0
|
C1D
|
A:HEM142
|
3.0
|
25.6
|
1.0
|
C1A
|
A:HEM142
|
3.0
|
25.4
|
1.0
|
C1B
|
A:HEM142
|
3.0
|
20.9
|
1.0
|
C4A
|
A:HEM142
|
3.0
|
22.6
|
1.0
|
CE1
|
A:HIS87
|
3.2
|
16.9
|
1.0
|
CHD
|
A:HEM142
|
3.3
|
23.5
|
1.0
|
CHC
|
A:HEM142
|
3.4
|
21.1
|
1.0
|
CHA
|
A:HEM142
|
3.4
|
26.2
|
1.0
|
CHB
|
A:HEM142
|
3.5
|
20.6
|
1.0
|
CD2
|
A:HIS87
|
3.6
|
19.2
|
1.0
|
C2C
|
A:HEM142
|
4.1
|
18.8
|
1.0
|
C3C
|
A:HEM142
|
4.1
|
19.3
|
1.0
|
C3A
|
A:HEM142
|
4.2
|
24.6
|
1.0
|
C2A
|
A:HEM142
|
4.2
|
26.0
|
1.0
|
C3D
|
A:HEM142
|
4.2
|
27.9
|
1.0
|
C2B
|
A:HEM142
|
4.2
|
20.8
|
1.0
|
C3B
|
A:HEM142
|
4.2
|
20.8
|
1.0
|
C2D
|
A:HEM142
|
4.2
|
25.6
|
1.0
|
ND1
|
A:HIS87
|
4.4
|
16.6
|
1.0
|
CG
|
A:HIS87
|
4.6
|
19.5
|
1.0
|
CE1
|
A:HIS58
|
4.6
|
19.8
|
1.0
|
CD1
|
A:LEU91
|
4.6
|
21.5
|
1.0
|
NE2
|
A:HIS58
|
4.9
|
22.8
|
1.0
|
|
Iron binding site 2 out
of 4 in 3hxn
Go back to
Iron Binding Sites List in 3hxn
Iron binding site 2 out
of 4 in the The Structure of Human Carbonmonoxyhemoglobin Complex to Ihp at 2.0 Angstrons Resolution.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of The Structure of Human Carbonmonoxyhemoglobin Complex to Ihp at 2.0 Angstrons Resolution. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe147
b:23.4
occ:1.00
|
FE
|
B:HEM147
|
0.0
|
23.4
|
1.0
|
C
|
B:CMO148
|
1.7
|
22.8
|
1.0
|
NC
|
B:HEM147
|
1.9
|
21.4
|
1.0
|
NA
|
B:HEM147
|
1.9
|
23.4
|
1.0
|
ND
|
B:HEM147
|
2.0
|
22.9
|
1.0
|
NB
|
B:HEM147
|
2.0
|
22.8
|
1.0
|
NE2
|
B:HIS92
|
2.5
|
16.2
|
1.0
|
O
|
B:CMO148
|
2.8
|
26.8
|
1.0
|
C4C
|
B:HEM147
|
2.9
|
18.9
|
1.0
|
C1C
|
B:HEM147
|
2.9
|
21.3
|
1.0
|
C1D
|
B:HEM147
|
3.0
|
19.9
|
1.0
|
C4B
|
B:HEM147
|
3.0
|
20.1
|
1.0
|
C4A
|
B:HEM147
|
3.0
|
21.6
|
1.0
|
C1A
|
B:HEM147
|
3.0
|
21.5
|
1.0
|
C1B
|
B:HEM147
|
3.1
|
21.9
|
1.0
|
C4D
|
B:HEM147
|
3.1
|
21.2
|
1.0
|
CE1
|
B:HIS92
|
3.3
|
15.4
|
1.0
|
CHD
|
B:HEM147
|
3.4
|
19.1
|
1.0
|
CHC
|
B:HEM147
|
3.4
|
20.5
|
1.0
|
CHB
|
B:HEM147
|
3.4
|
22.0
|
1.0
|
CHA
|
B:HEM147
|
3.5
|
19.9
|
1.0
|
CD2
|
B:HIS92
|
3.5
|
14.7
|
1.0
|
C2C
|
B:HEM147
|
4.1
|
19.9
|
1.0
|
C3C
|
B:HEM147
|
4.1
|
19.1
|
1.0
|
C2D
|
B:HEM147
|
4.2
|
19.4
|
1.0
|
C3A
|
B:HEM147
|
4.2
|
21.1
|
1.0
|
C2A
|
B:HEM147
|
4.3
|
22.4
|
1.0
|
C3B
|
B:HEM147
|
4.3
|
21.8
|
1.0
|
C3D
|
B:HEM147
|
4.3
|
21.6
|
1.0
|
C2B
|
B:HEM147
|
4.3
|
20.4
|
1.0
|
NE2
|
B:HIS63
|
4.4
|
19.8
|
1.0
|
ND1
|
B:HIS92
|
4.5
|
17.8
|
1.0
|
CG
|
B:HIS92
|
4.6
|
14.1
|
1.0
|
CE1
|
B:HIS63
|
4.7
|
19.2
|
1.0
|
CG2
|
B:VAL67
|
4.7
|
19.6
|
1.0
|
|
Iron binding site 3 out
of 4 in 3hxn
Go back to
Iron Binding Sites List in 3hxn
Iron binding site 3 out
of 4 in the The Structure of Human Carbonmonoxyhemoglobin Complex to Ihp at 2.0 Angstrons Resolution.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of The Structure of Human Carbonmonoxyhemoglobin Complex to Ihp at 2.0 Angstrons Resolution. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe142
b:27.1
occ:1.00
|
FE
|
C:HEM142
|
0.0
|
27.1
|
1.0
|
C
|
C:CMO143
|
1.7
|
25.9
|
1.0
|
NB
|
C:HEM142
|
1.9
|
24.6
|
1.0
|
NC
|
C:HEM142
|
1.9
|
26.3
|
1.0
|
NA
|
C:HEM142
|
1.9
|
25.6
|
1.0
|
ND
|
C:HEM142
|
1.9
|
23.4
|
1.0
|
NE2
|
C:HIS87
|
2.6
|
29.1
|
1.0
|
O
|
C:CMO143
|
2.8
|
29.1
|
1.0
|
C1B
|
C:HEM142
|
2.9
|
25.8
|
1.0
|
C4A
|
C:HEM142
|
3.0
|
24.4
|
1.0
|
C4B
|
C:HEM142
|
3.0
|
25.6
|
1.0
|
C1C
|
C:HEM142
|
3.0
|
25.5
|
1.0
|
C1D
|
C:HEM142
|
3.0
|
24.1
|
1.0
|
C4D
|
C:HEM142
|
3.0
|
24.6
|
1.0
|
C4C
|
C:HEM142
|
3.0
|
26.2
|
1.0
|
C1A
|
C:HEM142
|
3.0
|
24.3
|
1.0
|
CE1
|
C:HIS87
|
3.2
|
28.5
|
1.0
|
CHB
|
C:HEM142
|
3.3
|
24.2
|
1.0
|
CHA
|
C:HEM142
|
3.4
|
24.7
|
1.0
|
CHC
|
C:HEM142
|
3.4
|
24.4
|
1.0
|
CHD
|
C:HEM142
|
3.4
|
25.0
|
1.0
|
CD2
|
C:HIS87
|
3.8
|
27.4
|
1.0
|
C2D
|
C:HEM142
|
4.1
|
24.7
|
1.0
|
C2C
|
C:HEM142
|
4.2
|
23.8
|
1.0
|
C3A
|
C:HEM142
|
4.2
|
25.4
|
1.0
|
C2B
|
C:HEM142
|
4.2
|
25.9
|
1.0
|
C3B
|
C:HEM142
|
4.2
|
25.3
|
1.0
|
C3D
|
C:HEM142
|
4.2
|
25.1
|
1.0
|
C2A
|
C:HEM142
|
4.2
|
26.1
|
1.0
|
C3C
|
C:HEM142
|
4.3
|
22.8
|
1.0
|
CE1
|
C:HIS58
|
4.4
|
19.9
|
1.0
|
NE2
|
C:HIS58
|
4.4
|
21.5
|
1.0
|
ND1
|
C:HIS87
|
4.6
|
29.7
|
1.0
|
CG
|
C:HIS87
|
4.8
|
30.4
|
1.0
|
CD1
|
C:LEU91
|
4.9
|
26.1
|
1.0
|
|
Iron binding site 4 out
of 4 in 3hxn
Go back to
Iron Binding Sites List in 3hxn
Iron binding site 4 out
of 4 in the The Structure of Human Carbonmonoxyhemoglobin Complex to Ihp at 2.0 Angstrons Resolution.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of The Structure of Human Carbonmonoxyhemoglobin Complex to Ihp at 2.0 Angstrons Resolution. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe147
b:26.9
occ:1.00
|
FE
|
D:HEM147
|
0.0
|
26.9
|
1.0
|
C
|
D:CMO148
|
1.6
|
28.7
|
1.0
|
ND
|
D:HEM147
|
1.9
|
26.7
|
1.0
|
NA
|
D:HEM147
|
1.9
|
29.1
|
1.0
|
NC
|
D:HEM147
|
1.9
|
24.4
|
1.0
|
NB
|
D:HEM147
|
1.9
|
27.1
|
1.0
|
NE2
|
D:HIS92
|
2.5
|
25.0
|
1.0
|
O
|
D:CMO148
|
2.7
|
33.4
|
1.0
|
C1D
|
D:HEM147
|
2.9
|
26.6
|
1.0
|
C4C
|
D:HEM147
|
2.9
|
23.4
|
1.0
|
C1A
|
D:HEM147
|
3.0
|
29.2
|
1.0
|
C4A
|
D:HEM147
|
3.0
|
29.1
|
1.0
|
C4D
|
D:HEM147
|
3.0
|
28.0
|
1.0
|
C4B
|
D:HEM147
|
3.0
|
26.2
|
1.0
|
C1C
|
D:HEM147
|
3.0
|
24.3
|
1.0
|
C1B
|
D:HEM147
|
3.0
|
27.5
|
1.0
|
CHD
|
D:HEM147
|
3.3
|
24.7
|
1.0
|
CHA
|
D:HEM147
|
3.4
|
28.7
|
1.0
|
CE1
|
D:HIS92
|
3.4
|
24.5
|
1.0
|
CHB
|
D:HEM147
|
3.4
|
28.5
|
1.0
|
CHC
|
D:HEM147
|
3.4
|
23.2
|
1.0
|
CD2
|
D:HIS92
|
3.5
|
23.6
|
1.0
|
C3A
|
D:HEM147
|
4.1
|
30.1
|
1.0
|
C2D
|
D:HEM147
|
4.1
|
27.6
|
1.0
|
C2A
|
D:HEM147
|
4.2
|
30.8
|
1.0
|
C3C
|
D:HEM147
|
4.2
|
23.4
|
1.0
|
C3B
|
D:HEM147
|
4.2
|
28.4
|
1.0
|
C2C
|
D:HEM147
|
4.2
|
22.7
|
1.0
|
C2B
|
D:HEM147
|
4.2
|
28.1
|
1.0
|
C3D
|
D:HEM147
|
4.2
|
27.9
|
1.0
|
NE2
|
D:HIS63
|
4.3
|
33.9
|
1.0
|
ND1
|
D:HIS92
|
4.6
|
24.6
|
1.0
|
CG
|
D:HIS92
|
4.6
|
23.4
|
1.0
|
CG2
|
D:VAL67
|
4.7
|
27.2
|
1.0
|
CE1
|
D:HIS63
|
4.7
|
32.1
|
1.0
|
|
Reference:
F.A.V.Seixas,
M.F.Colombo.
The Structure of Human Carbonmonoxyhemoglobin Complex to Ihp at 2.0 Angstrons Resolution To Be Published.
Page generated: Sun Aug 4 11:48:56 2024
|