Atomistry » Iron » PDB 3i9t-3j7b » 3ive
Atomistry »
  Iron »
    PDB 3i9t-3j7b »
      3ive »

Iron in PDB 3ive: Putative 5'-Nucleotidase (C4898) From Escherichia Coli in Complex with Cytidine

Protein crystallography data

The structure of Putative 5'-Nucleotidase (C4898) From Escherichia Coli in Complex with Cytidine, PDB code: 3ive was solved by U.A.Ramagopal, R.Toro, S.K.Burley, S.C.Almo, New York Sgx Research Centerfor Structural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.70
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 156.261, 77.453, 47.518, 90.00, 103.83, 90.00
R / Rfree (%) 16.5 / 19

Other elements in 3ive:

The structure of Putative 5'-Nucleotidase (C4898) From Escherichia Coli in Complex with Cytidine also contains other interesting chemical elements:

Manganese (Mn) 1 atom
Chlorine (Cl) 1 atom

Iron Binding Sites:

The binding sites of Iron atom in the Putative 5'-Nucleotidase (C4898) From Escherichia Coli in Complex with Cytidine (pdb code 3ive). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Putative 5'-Nucleotidase (C4898) From Escherichia Coli in Complex with Cytidine, PDB code: 3ive:

Iron binding site 1 out of 1 in 3ive

Go back to Iron Binding Sites List in 3ive
Iron binding site 1 out of 1 in the Putative 5'-Nucleotidase (C4898) From Escherichia Coli in Complex with Cytidine


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Putative 5'-Nucleotidase (C4898) From Escherichia Coli in Complex with Cytidine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe602

b:11.3
occ:0.80
O2 A:SO4604 2.1 4.2 0.5
OD1 A:ASN111 2.1 11.0 1.0
OD2 A:ASP79 2.1 11.2 1.0
ND1 A:HIS251 2.2 11.5 1.0
NE2 A:HIS212 2.2 11.9 1.0
O4 A:SO4604 2.5 7.8 0.5
S A:SO4604 2.9 12.6 0.5
CE1 A:HIS251 3.0 13.8 1.0
CG A:ASN111 3.1 9.2 1.0
CG A:ASP79 3.1 11.9 1.0
CE1 A:HIS212 3.2 13.2 1.0
CD2 A:HIS212 3.2 10.2 1.0
ND2 A:ASN111 3.4 10.4 1.0
CG A:HIS251 3.4 13.7 1.0
OD1 A:ASP79 3.5 12.9 1.0
MN A:MN601 3.5 13.0 0.8
CA A:HIS251 3.7 13.5 1.0
O3 A:SO4604 3.7 9.6 0.5
CB A:HIS251 3.8 13.2 1.0
OD1 A:ASP32 4.0 13.5 1.0
O1 A:SO4604 4.0 7.3 0.5
CD2 A:HIS112 4.1 10.7 1.0
NE2 A:HIS251 4.2 12.1 1.0
ND1 A:HIS212 4.3 11.6 1.0
O A:HIS251 4.4 13.6 1.0
CB A:ASP79 4.4 9.3 1.0
CG A:HIS212 4.4 11.5 1.0
CD2 A:HIS251 4.4 14.0 1.0
CB A:ASN111 4.5 7.4 1.0
N A:ASN111 4.5 8.4 1.0
C A:HIS251 4.6 14.0 1.0
N A:HIS251 4.6 12.8 1.0
NE2 A:HIS112 4.7 10.3 1.0
O5' A:CTN603 4.8 17.8 1.0

Reference:

U.A.Ramagopal, R.Toro, S.K.Burley, S.C.Almo. Putative 5'-Nucleotidase (C4898) From Escherichia Coli in Complex with Cytidine To Be Published.
Page generated: Sun Dec 13 15:09:12 2020

Last articles

Zn in 7O75
Zn in 7O73
Zn in 7O4I
Zn in 7O72
Zn in 7O4J
Zn in 7NVR
Zn in 7NVY
Zn in 7NVZ
Zn in 7NW0
Zn in 7O4K
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy