Iron in PDB 3j15: Model of Ribosome-Bound Archaeal Pelota and ABCE1

The binding sites of Iron atom in the Model of Ribosome-Bound Archaeal Pelota and ABCE1 (pdb code 3j15). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the Model of Ribosome-Bound Archaeal Pelota and ABCE1, PDB code: 3j15:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Iron binding site 1 out of 8 in the Model of Ribosome-Bound Archaeal Pelota and ABCE1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Model of Ribosome-Bound Archaeal Pelota and ABCE1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe603 b:29.9 occ:1.00 FE1 B:SF4603 0.0 29.9 1.0 S2 B:SF4603 2.3 25.1 1.0 S4 B:SF4603 2.3 27.7 1.0 S3 B:SF4603 2.3 27.7 1.0 SG B:CYS29 2.6 0.0 1.0 FE3 B:SF4603 2.7 29.9 1.0 FE2 B:SF4603 2.7 30.5 1.0 FE4 B:SF4603 2.8 30.0 1.0 CB B:CYS29 3.7 0.0 1.0 CB B:ALA38 3.7 0.0 1.0 S1 B:SF4603 3.9 29.6 1.0 CD B:PRO30 4.1 0.0 1.0 CD1 B:ILE39 4.1 0.0 1.0 CA B:CYS29 4.2 0.0 1.0 CG1 B:ILE39 4.3 0.0 1.0 CG B:PRO30 4.4 0.0 1.0 CG2 B:VAL31 4.6 0.0 1.0 N B:PRO30 4.6 0.0 1.0 C B:CYS29 4.7 0.0 1.0 CB B:VAL31 4.7 0.0 1.0 N B:VAL31 4.8 0.0 1.0 CA B:CYS55 4.8 0.0 1.0 SG B:CYS58 4.9 0.0 1.0 SG B:CYS61 4.9 0.0 1.0

Iron binding site 2 out of 8 in the Model of Ribosome-Bound Archaeal Pelota and ABCE1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Model of Ribosome-Bound Archaeal Pelota and ABCE1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe603 b:30.5 occ:1.00 FE2 B:SF4603 0.0 30.5 1.0 S4 B:SF4603 2.2 27.7 1.0 S3 B:SF4603 2.2 27.7 1.0 S1 B:SF4603 2.3 29.6 1.0 SG B:CYS55 2.4 0.0 1.0 FE4 B:SF4603 2.7 30.0 1.0 FE1 B:SF4603 2.7 29.9 1.0 FE3 B:SF4603 2.8 29.9 1.0 CB B:CYS55 2.9 0.0 1.0 CA B:CYS55 3.1 0.0 1.0 C B:CYS55 3.7 0.0 1.0 N B:THR56 3.7 0.0 1.0 S2 B:SF4603 3.8 25.1 1.0 N B:GLY57 3.9 0.0 1.0 N B:CYS55 4.4 0.0 1.0 CB B:ALA38 4.5 0.0 1.0 CA B:GLY57 4.5 0.0 1.0 CD1 B:ILE72 4.7 0.0 1.0 O B:CYS55 4.7 0.0 1.0 N B:CYS58 4.8 0.0 1.0 CA B:THR56 4.9 0.0 1.0 SG B:CYS61 4.9 0.0 1.0 C B:THR56 4.9 0.0 1.0 CG2 B:ILE50 4.9 0.0 1.0 OG1 B:THR56 5.0 0.0 1.0

Iron binding site 3 out of 8 in the Model of Ribosome-Bound Archaeal Pelota and ABCE1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Model of Ribosome-Bound Archaeal Pelota and ABCE1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe603 b:29.9 occ:1.00 FE3 B:SF4603 0.0 29.9 1.0 S2 B:SF4603 2.2 25.1 1.0 S4 B:SF4603 2.2 27.7 1.0 S1 B:SF4603 2.3 29.6 1.0 SG B:CYS61 2.4 0.0 1.0 FE4 B:SF4603 2.7 30.0 1.0 FE1 B:SF4603 2.7 29.9 1.0 FE2 B:SF4603 2.8 30.5 1.0 CB B:CYS61 3.1 0.0 1.0 S3 B:SF4603 3.8 27.7 1.0 N B:CYS61 3.9 0.0 1.0 CD1 B:ILE39 4.1 0.0 1.0 CA B:CYS61 4.1 0.0 1.0 N B:ILE60 4.7 0.0 1.0 CG1 B:ILE39 4.7 0.0 1.0 SG B:CYS55 4.7 0.0 1.0 CG1 B:ILE72 4.8 0.0 1.0 SG B:CYS58 4.8 0.0 1.0 SG B:CYS29 4.8 0.0 1.0 N B:GLY59 4.9 0.0 1.0 CD1 B:ILE72 4.9 0.0 1.0 CA B:GLY59 5.0 0.0 1.0

Iron binding site 4 out of 8 in the Model of Ribosome-Bound Archaeal Pelota and ABCE1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Model of Ribosome-Bound Archaeal Pelota and ABCE1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe603 b:30.0 occ:1.00 FE4 B:SF4603 0.0 30.0 1.0 S3 B:SF4603 2.1 27.7 1.0 S1 B:SF4603 2.1 29.6 1.0 S2 B:SF4603 2.2 25.1 1.0 SG B:CYS58 2.5 0.0 1.0 FE3 B:SF4603 2.7 29.9 1.0 FE2 B:SF4603 2.7 30.5 1.0 FE1 B:SF4603 2.8 29.9 1.0 N B:GLY59 3.6 0.0 1.0 N B:CYS58 3.7 0.0 1.0 CB B:CYS58 3.7 0.0 1.0 S4 B:SF4603 3.8 27.7 1.0 CA B:CYS58 4.0 0.0 1.0 N B:ILE60 4.1 0.0 1.0 C B:CYS58 4.2 0.0 1.0 OG1 B:THR56 4.2 0.0 1.0 CG B:PRO30 4.2 0.0 1.0 CD B:PRO30 4.3 0.0 1.0 N B:GLY57 4.4 0.0 1.0 CA B:GLY59 4.4 0.0 1.0 C B:GLY57 4.5 0.0 1.0 SG B:CYS55 4.7 0.0 1.0 C B:GLY59 4.7 0.0 1.0 SG B:CYS61 4.8 0.0 1.0 N B:THR56 4.8 0.0 1.0 N B:CYS61 4.8 0.0 1.0 CA B:GLY57 4.8 0.0 1.0 CB B:ILE60 4.9 0.0 1.0

Iron binding site 5 out of 8 in the Model of Ribosome-Bound Archaeal Pelota and ABCE1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Model of Ribosome-Bound Archaeal Pelota and ABCE1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe604 b:22.7 occ:1.00 FE1 B:SF4604 0.0 22.7 1.0 S4 B:SF4604 2.3 20.4 1.0 S2 B:SF4604 2.3 20.2 1.0 S3 B:SF4604 2.3 21.1 1.0 SG B:CYS25 2.3 0.0 1.0 FE3 B:SF4604 2.7 23.3 1.0 FE2 B:SF4604 2.7 23.3 1.0 FE4 B:SF4604 2.8 22.6 1.0 CB B:CYS25 3.8 0.0 1.0 S1 B:SF4604 3.9 21.6 1.0 N B:CYS25 4.1 0.0 1.0 CD1 B:ILE70 4.3 0.0 1.0 CG B:PRO48 4.4 0.0 1.0 CA B:CYS25 4.5 0.0 1.0 N B:LEU24 4.5 0.0 1.0 CB B:PRO48 4.7 0.0 1.0 SG B:CYS20 4.7 0.0 1.0 CA B:PHE23 4.7 0.0 1.0 C B:PHE23 4.8 0.0 1.0 SG B:CYS15 5.0 0.0 1.0

Iron binding site 6 out of 8 in the Model of Ribosome-Bound Archaeal Pelota and ABCE1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Model of Ribosome-Bound Archaeal Pelota and ABCE1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe604 b:23.3 occ:1.00 FE2 B:SF4604 0.0 23.3 1.0 S4 B:SF4604 2.2 20.4 1.0 S3 B:SF4604 2.2 21.1 1.0 S1 B:SF4604 2.3 21.6 1.0 SG B:CYS20 2.4 0.0 1.0 FE4 B:SF4604 2.7 22.6 1.0 FE1 B:SF4604 2.7 22.7 1.0 FE3 B:SF4604 2.8 23.3 1.0 CB B:CYS20 3.4 0.0 1.0 S2 B:SF4604 3.8 20.2 1.0 N B:LEU24 4.2 0.0 1.0 CA B:PRO17 4.3 0.0 1.0 O B:ASN16 4.4 0.0 1.0 N B:PRO17 4.5 0.0 1.0 C B:ASN16 4.6 0.0 1.0 CA B:PHE23 4.6 0.0 1.0 CB B:LEU24 4.6 0.0 1.0 SG B:CYS15 4.7 0.0 1.0 CA B:CYS20 4.8 0.0 1.0 CD B:PRO66 4.8 0.0 1.0 N B:ASN16 4.8 0.0 1.0 CG B:PRO66 4.8 0.0 1.0 C B:PHE23 4.9 0.0 1.0 SG B:CYS25 4.9 0.0 1.0

Iron binding site 7 out of 8 in the Model of Ribosome-Bound Archaeal Pelota and ABCE1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Model of Ribosome-Bound Archaeal Pelota and ABCE1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe604 b:23.3 occ:1.00 FE3 B:SF4604 0.0 23.3 1.0 S2 B:SF4604 2.2 20.2 1.0 S4 B:SF4604 2.2 20.4 1.0 S1 B:SF4604 2.3 21.6 1.0 SG B:CYS65 2.6 0.0 1.0 FE4 B:SF4604 2.6 22.6 1.0 FE1 B:SF4604 2.7 22.7 1.0 FE2 B:SF4604 2.8 23.3 1.0 CB B:CYS65 3.6 0.0 1.0 S3 B:SF4604 3.8 21.1 1.0 CA B:CYS65 4.1 0.0 1.0 CB B:ALA69 4.4 0.0 1.0 CD B:PRO66 4.5 0.0 1.0 CD1 B:ILE70 4.5 0.0 1.0 SG B:CYS25 4.6 0.0 1.0 CG1 B:ILE70 4.7 0.0 1.0 C B:CYS65 4.8 0.0 1.0 CG B:PRO66 4.9 0.0 1.0 CB B:CYS15 4.9 0.0 1.0 N B:PRO66 5.0 0.0 1.0 SG B:CYS15 5.0 0.0 1.0

Iron binding site 8 out of 8 in the Model of Ribosome-Bound Archaeal Pelota and ABCE1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Model of Ribosome-Bound Archaeal Pelota and ABCE1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe604 b:22.6 occ:1.00 FE4 B:SF4604 0.0 22.6 1.0 S3 B:SF4604 2.1 21.1 1.0 S1 B:SF4604 2.1 21.6 1.0 S2 B:SF4604 2.1 20.2 1.0 SG B:CYS15 2.4 0.0 1.0 FE3 B:SF4604 2.6 23.3 1.0 FE2 B:SF4604 2.7 23.3 1.0 FE1 B:SF4604 2.8 22.7 1.0 CB B:CYS15 3.0 0.0 1.0 CA B:CYS15 3.7 0.0 1.0 S4 B:SF4604 3.8 20.4 1.0 N B:ASN16 3.9 0.0 1.0 C B:CYS15 4.2 0.0 1.0 CG B:PRO48 4.3 0.0 1.0 CD B:PRO48 4.5 0.0 1.0 N B:PRO17 4.6 0.0 1.0 CD B:PRO17 4.8 0.0 1.0 C B:ASN16 4.8 0.0 1.0 CG B:PRO17 4.8 0.0 1.0 CB B:ALA69 4.8 0.0 1.0 N B:CYS15 4.9 0.0 1.0 SG B:CYS65 5.0 0.0 1.0 SG B:CYS25 5.0 0.0 1.0 CA B:ASN16 5.0 0.0 1.0

T.Becker, S.Franckenberg, S.Wickles, C.J.Shoemaker, A.M.Anger, J.-P.Armache, H.Sieber, C.Ungewickell, O.Berninghausen, I.Daberkow, A.Karcher, M.Thomm, K.P.Hopfner, R.Green, R.Beckmann. Structural Basis of Highly Conserved Ribosome Recycling in Eukaryotes and Archaea. Nature V. 482 501 2012.
ISSN: ISSN 0028-0836
PubMed: 22358840
DOI: 10.1038/NATURE10829