Iron in PDB 3j7b: Catalase Solved at 3.2 Angstrom Resolution By Microed
Enzymatic activity of Catalase Solved at 3.2 Angstrom Resolution By Microed
All present enzymatic activity of Catalase Solved at 3.2 Angstrom Resolution By Microed:
1.11.1.6;
Iron Binding Sites:
The binding sites of Iron atom in the Catalase Solved at 3.2 Angstrom Resolution By Microed
(pdb code 3j7b). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the
Catalase Solved at 3.2 Angstrom Resolution By Microed, PDB code: 3j7b:
Jump to Iron binding site number:
1;
2;
3;
4;
Iron binding site 1 out
of 4 in 3j7b
Go back to
Iron Binding Sites List in 3j7b
Iron binding site 1 out
of 4 in the Catalase Solved at 3.2 Angstrom Resolution By Microed
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Catalase Solved at 3.2 Angstrom Resolution By Microed within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe601
b:17.9
occ:1.00
|
FE
|
A:HEM601
|
0.0
|
17.9
|
1.0
|
NC
|
A:HEM601
|
2.1
|
17.9
|
1.0
|
NA
|
A:HEM601
|
2.1
|
17.9
|
1.0
|
ND
|
A:HEM601
|
2.1
|
17.9
|
1.0
|
NB
|
A:HEM601
|
2.1
|
17.9
|
1.0
|
OH
|
A:TYR357
|
2.5
|
17.9
|
1.0
|
C1C
|
A:HEM601
|
3.1
|
17.9
|
1.0
|
C4D
|
A:HEM601
|
3.1
|
17.9
|
1.0
|
C1A
|
A:HEM601
|
3.1
|
17.9
|
1.0
|
C4C
|
A:HEM601
|
3.1
|
17.9
|
1.0
|
C1D
|
A:HEM601
|
3.1
|
17.9
|
1.0
|
C4B
|
A:HEM601
|
3.1
|
17.9
|
1.0
|
C1B
|
A:HEM601
|
3.1
|
17.9
|
1.0
|
C4A
|
A:HEM601
|
3.1
|
17.9
|
1.0
|
CHA
|
A:HEM601
|
3.4
|
17.9
|
1.0
|
CHC
|
A:HEM601
|
3.4
|
17.9
|
1.0
|
CHD
|
A:HEM601
|
3.4
|
17.9
|
1.0
|
CHB
|
A:HEM601
|
3.5
|
17.9
|
1.0
|
CZ
|
A:TYR357
|
3.6
|
17.9
|
1.0
|
CZ
|
A:PHE160
|
4.1
|
18.1
|
1.0
|
C2C
|
A:HEM601
|
4.3
|
17.9
|
1.0
|
C3C
|
A:HEM601
|
4.3
|
17.9
|
1.0
|
C3B
|
A:HEM601
|
4.3
|
17.9
|
1.0
|
C2B
|
A:HEM601
|
4.3
|
17.9
|
1.0
|
C3D
|
A:HEM601
|
4.3
|
17.9
|
1.0
|
C2D
|
A:HEM601
|
4.3
|
17.9
|
1.0
|
C2A
|
A:HEM601
|
4.3
|
17.9
|
1.0
|
C3A
|
A:HEM601
|
4.3
|
17.9
|
1.0
|
NH2
|
A:ARG353
|
4.3
|
18.3
|
1.0
|
CE2
|
A:TYR357
|
4.3
|
17.9
|
1.0
|
CE1
|
A:TYR357
|
4.4
|
17.9
|
1.0
|
NE
|
A:ARG353
|
4.5
|
18.3
|
1.0
|
NE2
|
A:HIS74
|
4.6
|
17.9
|
1.0
|
CE1
|
A:PHE160
|
4.7
|
18.1
|
1.0
|
CD2
|
A:HIS74
|
4.7
|
17.9
|
1.0
|
CZ
|
A:ARG353
|
4.7
|
18.3
|
1.0
|
CE2
|
A:PHE160
|
4.7
|
18.1
|
1.0
|
CG2
|
A:VAL73
|
4.8
|
17.6
|
1.0
|
|
Iron binding site 2 out
of 4 in 3j7b
Go back to
Iron Binding Sites List in 3j7b
Iron binding site 2 out
of 4 in the Catalase Solved at 3.2 Angstrom Resolution By Microed
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Catalase Solved at 3.2 Angstrom Resolution By Microed within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe601
b:20.4
occ:1.00
|
FE
|
B:HEM601
|
0.0
|
20.4
|
1.0
|
NA
|
B:HEM601
|
2.0
|
20.4
|
1.0
|
NC
|
B:HEM601
|
2.1
|
20.4
|
1.0
|
ND
|
B:HEM601
|
2.1
|
20.4
|
1.0
|
NB
|
B:HEM601
|
2.1
|
20.4
|
1.0
|
OH
|
B:TYR357
|
2.5
|
19.5
|
1.0
|
C4C
|
B:HEM601
|
3.0
|
20.4
|
1.0
|
C4A
|
B:HEM601
|
3.1
|
20.4
|
1.0
|
C1D
|
B:HEM601
|
3.1
|
20.4
|
1.0
|
C1C
|
B:HEM601
|
3.1
|
20.4
|
1.0
|
C1A
|
B:HEM601
|
3.1
|
20.4
|
1.0
|
C4D
|
B:HEM601
|
3.1
|
20.4
|
1.0
|
C1B
|
B:HEM601
|
3.1
|
20.4
|
1.0
|
C4B
|
B:HEM601
|
3.1
|
20.4
|
1.0
|
CHD
|
B:HEM601
|
3.4
|
20.4
|
1.0
|
CHA
|
B:HEM601
|
3.4
|
20.4
|
1.0
|
CHB
|
B:HEM601
|
3.4
|
20.4
|
1.0
|
CHC
|
B:HEM601
|
3.5
|
20.4
|
1.0
|
CZ
|
B:TYR357
|
3.5
|
19.5
|
1.0
|
CE1
|
B:TYR357
|
4.2
|
19.5
|
1.0
|
CZ
|
B:PHE160
|
4.2
|
21.3
|
1.0
|
C3C
|
B:HEM601
|
4.2
|
20.4
|
1.0
|
C2C
|
B:HEM601
|
4.2
|
20.4
|
1.0
|
NH2
|
B:ARG353
|
4.3
|
20.1
|
1.0
|
C3A
|
B:HEM601
|
4.3
|
20.4
|
1.0
|
C2A
|
B:HEM601
|
4.3
|
20.4
|
1.0
|
NE
|
B:ARG353
|
4.3
|
20.1
|
1.0
|
C2D
|
B:HEM601
|
4.3
|
20.4
|
1.0
|
C3D
|
B:HEM601
|
4.3
|
20.4
|
1.0
|
C2B
|
B:HEM601
|
4.3
|
20.4
|
1.0
|
C3B
|
B:HEM601
|
4.3
|
20.4
|
1.0
|
CE2
|
B:TYR357
|
4.4
|
19.5
|
1.0
|
CZ
|
B:ARG353
|
4.6
|
20.1
|
1.0
|
CG2
|
B:VAL73
|
4.7
|
20.5
|
1.0
|
NE2
|
B:HIS74
|
4.7
|
20.8
|
1.0
|
CD2
|
B:HIS74
|
4.7
|
20.8
|
1.0
|
CE1
|
B:PHE160
|
4.7
|
21.3
|
1.0
|
CE2
|
B:PHE160
|
4.8
|
21.3
|
1.0
|
|
Iron binding site 3 out
of 4 in 3j7b
Go back to
Iron Binding Sites List in 3j7b
Iron binding site 3 out
of 4 in the Catalase Solved at 3.2 Angstrom Resolution By Microed
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Catalase Solved at 3.2 Angstrom Resolution By Microed within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe601
b:21.9
occ:1.00
|
FE
|
C:HEM601
|
0.0
|
21.9
|
1.0
|
NC
|
C:HEM601
|
2.0
|
21.9
|
1.0
|
NA
|
C:HEM601
|
2.1
|
21.9
|
1.0
|
ND
|
C:HEM601
|
2.1
|
21.9
|
1.0
|
NB
|
C:HEM601
|
2.1
|
21.9
|
1.0
|
OH
|
C:TYR357
|
2.5
|
21.1
|
1.0
|
C1C
|
C:HEM601
|
3.0
|
21.9
|
1.0
|
C4C
|
C:HEM601
|
3.0
|
21.9
|
1.0
|
C1A
|
C:HEM601
|
3.1
|
21.9
|
1.0
|
C1D
|
C:HEM601
|
3.1
|
21.9
|
1.0
|
C4A
|
C:HEM601
|
3.1
|
21.9
|
1.0
|
C4D
|
C:HEM601
|
3.1
|
21.9
|
1.0
|
C1B
|
C:HEM601
|
3.1
|
21.9
|
1.0
|
C4B
|
C:HEM601
|
3.1
|
21.9
|
1.0
|
CHC
|
C:HEM601
|
3.4
|
21.9
|
1.0
|
CHA
|
C:HEM601
|
3.4
|
21.9
|
1.0
|
CHD
|
C:HEM601
|
3.4
|
21.9
|
1.0
|
CHB
|
C:HEM601
|
3.5
|
21.9
|
1.0
|
CZ
|
C:TYR357
|
3.6
|
21.1
|
1.0
|
CZ
|
C:PHE160
|
4.0
|
22.5
|
1.0
|
C2C
|
C:HEM601
|
4.2
|
21.9
|
1.0
|
C3C
|
C:HEM601
|
4.3
|
21.9
|
1.0
|
C2A
|
C:HEM601
|
4.3
|
21.9
|
1.0
|
C3A
|
C:HEM601
|
4.3
|
21.9
|
1.0
|
C2B
|
C:HEM601
|
4.3
|
21.9
|
1.0
|
C2D
|
C:HEM601
|
4.3
|
21.9
|
1.0
|
C3B
|
C:HEM601
|
4.3
|
21.9
|
1.0
|
C3D
|
C:HEM601
|
4.3
|
21.9
|
1.0
|
CE2
|
C:TYR357
|
4.4
|
21.1
|
1.0
|
CE1
|
C:TYR357
|
4.4
|
21.1
|
1.0
|
CE1
|
C:PHE160
|
4.4
|
22.5
|
1.0
|
NH2
|
C:ARG353
|
4.5
|
22.0
|
1.0
|
NE
|
C:ARG353
|
4.5
|
22.0
|
1.0
|
CE2
|
C:PHE160
|
4.7
|
22.5
|
1.0
|
CD2
|
C:HIS74
|
4.7
|
21.8
|
1.0
|
CZ
|
C:ARG353
|
4.8
|
22.0
|
1.0
|
NE2
|
C:HIS74
|
4.9
|
21.8
|
1.0
|
|
Iron binding site 4 out
of 4 in 3j7b
Go back to
Iron Binding Sites List in 3j7b
Iron binding site 4 out
of 4 in the Catalase Solved at 3.2 Angstrom Resolution By Microed
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Catalase Solved at 3.2 Angstrom Resolution By Microed within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe601
b:19.8
occ:1.00
|
FE
|
D:HEM601
|
0.0
|
19.8
|
1.0
|
NC
|
D:HEM601
|
2.0
|
19.8
|
1.0
|
ND
|
D:HEM601
|
2.1
|
19.8
|
1.0
|
NA
|
D:HEM601
|
2.1
|
19.8
|
1.0
|
NB
|
D:HEM601
|
2.1
|
19.8
|
1.0
|
OH
|
D:TYR357
|
2.5
|
19.6
|
1.0
|
C4C
|
D:HEM601
|
3.0
|
19.8
|
1.0
|
C1C
|
D:HEM601
|
3.0
|
19.8
|
1.0
|
C1D
|
D:HEM601
|
3.1
|
19.8
|
1.0
|
C1A
|
D:HEM601
|
3.1
|
19.8
|
1.0
|
C4B
|
D:HEM601
|
3.1
|
19.8
|
1.0
|
C4D
|
D:HEM601
|
3.1
|
19.8
|
1.0
|
C4A
|
D:HEM601
|
3.1
|
19.8
|
1.0
|
C1B
|
D:HEM601
|
3.2
|
19.8
|
1.0
|
CHD
|
D:HEM601
|
3.4
|
19.8
|
1.0
|
CHC
|
D:HEM601
|
3.4
|
19.8
|
1.0
|
CHA
|
D:HEM601
|
3.4
|
19.8
|
1.0
|
CZ
|
D:TYR357
|
3.5
|
19.6
|
1.0
|
CHB
|
D:HEM601
|
3.5
|
19.8
|
1.0
|
CZ
|
D:PHE160
|
4.0
|
20.3
|
1.0
|
CE2
|
D:TYR357
|
4.2
|
19.6
|
1.0
|
C3C
|
D:HEM601
|
4.2
|
19.8
|
1.0
|
C2C
|
D:HEM601
|
4.2
|
19.8
|
1.0
|
C2D
|
D:HEM601
|
4.3
|
19.8
|
1.0
|
C2A
|
D:HEM601
|
4.3
|
19.8
|
1.0
|
C3D
|
D:HEM601
|
4.3
|
19.8
|
1.0
|
C3B
|
D:HEM601
|
4.3
|
19.8
|
1.0
|
C3A
|
D:HEM601
|
4.3
|
19.8
|
1.0
|
CE1
|
D:TYR357
|
4.3
|
19.6
|
1.0
|
C2B
|
D:HEM601
|
4.4
|
19.8
|
1.0
|
CG2
|
D:VAL73
|
4.4
|
18.9
|
1.0
|
NH2
|
D:ARG353
|
4.4
|
20.1
|
1.0
|
CE2
|
D:PHE160
|
4.5
|
20.3
|
1.0
|
NE
|
D:ARG353
|
4.6
|
20.1
|
1.0
|
CE1
|
D:PHE160
|
4.6
|
20.3
|
1.0
|
CD2
|
D:HIS74
|
4.7
|
19.3
|
1.0
|
NE2
|
D:HIS74
|
4.7
|
19.3
|
1.0
|
CZ
|
D:ARG353
|
4.8
|
20.1
|
1.0
|
|
Reference:
B.L.Nannenga,
D.Shi,
J.Hattne,
F.E.Reyes,
T.Gonen.
Catalase Solved at 3.2 Angstrom Resolution By Microed Elife 2014.
ISSN: ESSN 2050-084X
Page generated: Sun Aug 4 12:47:15 2024
|