Iron in PDB 3jcu: Cryo-Em Structure of Spinach Psii-Lhcii Supercomplex at 3.2 Angstrom Resolution

The structure of Cryo-Em Structure of Spinach Psii-Lhcii Supercomplex at 3.2 Angstrom Resolution also contains other interesting chemical elements:

Magnesium	(Mg)	206 atoms
Manganese	(Mn)	8 atoms
Calcium	(Ca)	2 atoms
Chlorine	(Cl)	4 atoms

The binding sites of Iron atom in the Cryo-Em Structure of Spinach Psii-Lhcii Supercomplex at 3.2 Angstrom Resolution (pdb code 3jcu). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Cryo-Em Structure of Spinach Psii-Lhcii Supercomplex at 3.2 Angstrom Resolution, PDB code: 3jcu:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in the Cryo-Em Structure of Spinach Psii-Lhcii Supercomplex at 3.2 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryo-Em Structure of Spinach Psii-Lhcii Supercomplex at 3.2 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe402 b:26.9 occ:1.00 NE2 D:HIS214 2.0 41.2 1.0 NE2 A:HIS272 2.1 54.7 1.0 NE2 D:HIS268 2.1 48.8 1.0 NE2 A:HIS215 2.2 46.6 1.0 O2 D:BCT401 2.3 32.5 1.0 O3 D:BCT401 2.3 35.7 1.0 C D:BCT401 2.6 41.5 1.0 CE1 D:HIS214 3.0 43.8 1.0 CD2 D:HIS214 3.0 39.5 1.0 CD2 A:HIS272 3.1 49.7 1.0 CE1 D:HIS268 3.1 51.5 1.0 CE1 A:HIS215 3.1 50.2 1.0 CE1 A:HIS272 3.1 60.4 1.0 CD2 D:HIS268 3.2 45.9 1.0 CD2 A:HIS215 3.2 47.2 1.0 O1 D:BCT401 3.9 51.6 1.0 ND1 D:HIS214 4.1 41.4 1.0 CG D:HIS214 4.1 40.0 1.0 ND1 D:HIS268 4.2 45.8 1.0 CG A:HIS272 4.2 51.5 1.0 ND1 A:HIS272 4.2 56.0 1.0 ND1 A:HIS215 4.2 48.0 1.0 CG D:HIS268 4.3 42.8 1.0 CG A:HIS215 4.3 45.9 1.0 OH A:TYR246 4.5 0.8 1.0 CG2 A:VAL219 4.7 72.6 1.0 CG2 D:VAL218 4.7 58.3 1.0 OH D:TYR244 4.7 71.0 1.0

Iron binding site 2 out of 4 in the Cryo-Em Structure of Spinach Psii-Lhcii Supercomplex at 3.2 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryo-Em Structure of Spinach Psii-Lhcii Supercomplex at 3.2 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ F:Fe101 b:0.6 occ:1.00 FE F:HEM101 0.0 0.6 1.0 NC F:HEM101 2.0 0.0 1.0 NA F:HEM101 2.0 0.6 1.0 NB F:HEM101 2.0 0.0 1.0 ND F:HEM101 2.1 0.7 1.0 NE2 F:HIS24 2.5 0.4 1.0 NE2 E:HIS23 2.6 0.5 1.0 C1C F:HEM101 3.0 0.8 1.0 C4C F:HEM101 3.0 0.7 1.0 C1A F:HEM101 3.0 0.0 1.0 C4A F:HEM101 3.0 0.8 1.0 C1B F:HEM101 3.1 0.9 1.0 C4B F:HEM101 3.1 0.2 1.0 C1D F:HEM101 3.1 0.8 1.0 C4D F:HEM101 3.1 0.8 1.0 CD2 E:HIS23 3.2 0.3 1.0 CE1 F:HIS24 3.2 0.3 1.0 CD2 F:HIS24 3.4 0.6 1.0 CE1 E:HIS23 3.4 0.5 1.0 CHD F:HEM101 3.4 0.4 1.0 CHA F:HEM101 3.4 0.8 1.0 CHC F:HEM101 3.4 99.9 1.0 CHB F:HEM101 3.4 0.9 1.0 CG E:HIS23 4.2 0.2 1.0 C2C F:HEM101 4.2 0.7 1.0 C2A F:HEM101 4.2 0.4 1.0 C3A F:HEM101 4.2 0.7 1.0 C3C F:HEM101 4.2 0.5 1.0 ND1 E:HIS23 4.2 0.3 1.0 ND1 F:HIS24 4.3 0.7 1.0 C2B F:HEM101 4.3 1.0 1.0 C3B F:HEM101 4.3 0.5 1.0 C2D F:HEM101 4.3 0.2 1.0 C3D F:HEM101 4.3 0.5 1.0 CG F:HIS24 4.4 0.3 1.0

Iron binding site 3 out of 4 in the Cryo-Em Structure of Spinach Psii-Lhcii Supercomplex at 3.2 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cryo-Em Structure of Spinach Psii-Lhcii Supercomplex at 3.2 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ a:Fe402 b:26.9 occ:1.00 NE2 d:HIS214 2.0 41.2 1.0 NE2 a:HIS272 2.1 54.7 1.0 NE2 d:HIS268 2.1 48.8 1.0 NE2 a:HIS215 2.2 46.6 1.0 O2 d:BCT401 2.3 32.5 1.0 O3 d:BCT401 2.3 35.7 1.0 C d:BCT401 2.6 41.5 1.0 CE1 d:HIS214 3.0 43.8 1.0 CD2 d:HIS214 3.0 39.5 1.0 CD2 a:HIS272 3.1 49.7 1.0 CE1 d:HIS268 3.1 51.5 1.0 CE1 a:HIS215 3.1 50.2 1.0 CE1 a:HIS272 3.1 60.4 1.0 CD2 d:HIS268 3.2 45.9 1.0 CD2 a:HIS215 3.2 47.2 1.0 O1 d:BCT401 3.9 51.6 1.0 ND1 d:HIS214 4.1 41.4 1.0 CG d:HIS214 4.1 40.0 1.0 ND1 d:HIS268 4.2 45.8 1.0 CG a:HIS272 4.2 51.5 1.0 ND1 a:HIS272 4.2 56.0 1.0 ND1 a:HIS215 4.2 48.0 1.0 CG d:HIS268 4.3 42.8 1.0 CG a:HIS215 4.3 45.9 1.0 OH a:TYR246 4.5 0.8 1.0 CG2 a:VAL219 4.7 72.6 1.0 CG2 d:VAL218 4.7 58.3 1.0 OH d:TYR244 4.7 71.0 1.0

Iron binding site 4 out of 4 in the Cryo-Em Structure of Spinach Psii-Lhcii Supercomplex at 3.2 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cryo-Em Structure of Spinach Psii-Lhcii Supercomplex at 3.2 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ f:Fe101 b:0.6 occ:1.00 FE f:HEM101 0.0 0.6 1.0 NC f:HEM101 2.0 0.0 1.0 NA f:HEM101 2.0 0.6 1.0 NB f:HEM101 2.0 0.0 1.0 ND f:HEM101 2.1 0.7 1.0 NE2 f:HIS24 2.5 0.4 1.0 NE2 e:HIS23 2.6 0.5 1.0 C1C f:HEM101 3.0 0.8 1.0 C4C f:HEM101 3.0 0.7 1.0 C1A f:HEM101 3.0 0.0 1.0 C4A f:HEM101 3.0 0.8 1.0 C1B f:HEM101 3.1 0.9 1.0 C4B f:HEM101 3.1 0.2 1.0 C1D f:HEM101 3.1 0.8 1.0 C4D f:HEM101 3.1 0.8 1.0 CE1 f:HIS24 3.2 0.3 1.0 CD2 e:HIS23 3.2 0.3 1.0 CD2 f:HIS24 3.4 0.6 1.0 CE1 e:HIS23 3.4 0.5 1.0 CHD f:HEM101 3.4 0.4 1.0 CHA f:HEM101 3.4 0.8 1.0 CHC f:HEM101 3.4 99.9 1.0 CHB f:HEM101 3.4 0.9 1.0 CG e:HIS23 4.2 0.2 1.0 C2C f:HEM101 4.2 0.7 1.0 C2A f:HEM101 4.2 0.4 1.0 C3A f:HEM101 4.2 0.7 1.0 C3C f:HEM101 4.2 0.5 1.0 ND1 e:HIS23 4.2 0.3 1.0 ND1 f:HIS24 4.3 0.7 1.0 C2B f:HEM101 4.3 1.0 1.0 C3B f:HEM101 4.3 0.5 1.0 C2D f:HEM101 4.3 0.2 1.0 C3D f:HEM101 4.3 0.5 1.0 CG f:HIS24 4.4 0.3 1.0

X.P.Wei, X.D.Su, P.Cao, X.Y.Liu, W.R.Chang, M.Li, X.Z.Zhang, Z.F.Liu. Structure of Spinach Photosystem II-Lhcii Supercomplex at 3.2 A Resolution Nature V. 534 69 2016.
ISSN: ISSN 0028-0836
DOI: 10.1038/NATURE18020