Iron in PDB 3jsk: Thiazole Synthase From Neurospora Crassa
Protein crystallography data
The structure of Thiazole Synthase From Neurospora Crassa, PDB code: 3jsk
was solved by
Y.N.Kang,
S.Bale,
S.E.Ealick,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
49.98 /
2.70
|
Space group
|
P 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
158.237,
125.914,
158.208,
90.00,
90.22,
90.00
|
R / Rfree (%)
|
20.2 /
24.6
|
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
16;
Binding sites:
The binding sites of Iron atom in the Thiazole Synthase From Neurospora Crassa
(pdb code 3jsk). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 16 binding sites of Iron where determined in the
Thiazole Synthase From Neurospora Crassa, PDB code: 3jsk:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 16 in 3jsk
Go back to
Iron Binding Sites List in 3jsk
Iron binding site 1 out
of 16 in the Thiazole Synthase From Neurospora Crassa
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Thiazole Synthase From Neurospora Crassa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe345
b:0.0
occ:1.00
|
N3T
|
A:AHZ500
|
2.4
|
36.7
|
1.0
|
NE2
|
A:HIS249
|
2.6
|
42.6
|
1.0
|
O1R
|
A:AHZ500
|
3.0
|
33.6
|
1.0
|
C4T
|
A:AHZ500
|
3.3
|
35.5
|
1.0
|
C2T
|
A:AHZ500
|
3.4
|
35.9
|
1.0
|
CD2
|
A:HIS249
|
3.5
|
42.9
|
1.0
|
OD1
|
F:ASP234
|
3.5
|
43.0
|
1.0
|
C1M
|
A:AHZ500
|
3.6
|
36.5
|
1.0
|
C1R
|
A:AHZ500
|
3.6
|
36.1
|
1.0
|
CE1
|
A:HIS249
|
3.7
|
42.7
|
1.0
|
NH2
|
A:ARG311
|
4.0
|
29.7
|
1.0
|
O
|
A:HOH364
|
4.5
|
16.2
|
1.0
|
C5T
|
A:AHZ500
|
4.6
|
36.1
|
1.0
|
CD
|
F:PRO235
|
4.6
|
31.7
|
1.0
|
CG
|
A:HIS249
|
4.7
|
43.6
|
1.0
|
CG
|
F:ASP234
|
4.7
|
40.6
|
1.0
|
ND1
|
A:HIS249
|
4.8
|
43.3
|
1.0
|
CA
|
F:ASP234
|
4.8
|
35.1
|
1.0
|
S1T
|
A:AHZ500
|
4.8
|
37.5
|
1.0
|
O2R
|
A:AHZ500
|
4.9
|
35.6
|
1.0
|
|
Iron binding site 2 out
of 16 in 3jsk
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Iron Binding Sites List in 3jsk
Iron binding site 2 out
of 16 in the Thiazole Synthase From Neurospora Crassa
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Thiazole Synthase From Neurospora Crassa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe345
b:94.0
occ:1.00
|
N3T
|
B:AHZ500
|
2.2
|
54.1
|
1.0
|
NE2
|
B:HIS249
|
2.7
|
42.4
|
1.0
|
C4T
|
B:AHZ500
|
3.1
|
53.8
|
1.0
|
C1M
|
B:AHZ500
|
3.2
|
54.7
|
1.0
|
C2T
|
B:AHZ500
|
3.3
|
55.1
|
1.0
|
O1R
|
B:AHZ500
|
3.4
|
58.1
|
1.0
|
OD1
|
H:ASP234
|
3.6
|
40.0
|
1.0
|
CE1
|
B:HIS249
|
3.6
|
42.6
|
1.0
|
NH2
|
B:ARG311
|
3.7
|
33.9
|
1.0
|
C1R
|
B:AHZ500
|
3.7
|
56.9
|
1.0
|
CD2
|
B:HIS249
|
3.7
|
43.7
|
1.0
|
C5T
|
B:AHZ500
|
4.4
|
52.8
|
1.0
|
CD
|
H:PRO235
|
4.5
|
30.6
|
1.0
|
S1T
|
B:AHZ500
|
4.7
|
53.2
|
1.0
|
ND1
|
B:HIS249
|
4.8
|
43.9
|
1.0
|
CG
|
H:ASP234
|
4.8
|
38.8
|
1.0
|
O2R
|
B:AHZ500
|
4.8
|
58.3
|
1.0
|
CA
|
H:ASP234
|
4.8
|
33.7
|
1.0
|
CG
|
B:HIS249
|
4.9
|
44.6
|
1.0
|
CZ
|
B:ARG311
|
4.9
|
35.6
|
1.0
|
|
Iron binding site 3 out
of 16 in 3jsk
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Iron Binding Sites List in 3jsk
Iron binding site 3 out
of 16 in the Thiazole Synthase From Neurospora Crassa
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Thiazole Synthase From Neurospora Crassa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe345
b:0.0
occ:1.00
|
NE2
|
C:HIS249
|
2.5
|
42.7
|
1.0
|
N3T
|
C:AHZ500
|
2.7
|
47.2
|
1.0
|
O1R
|
C:AHZ500
|
3.2
|
51.2
|
1.0
|
CE1
|
C:HIS249
|
3.2
|
42.8
|
1.0
|
NH2
|
C:ARG311
|
3.4
|
31.7
|
1.0
|
CD2
|
C:HIS249
|
3.6
|
43.6
|
1.0
|
C4T
|
C:AHZ500
|
3.6
|
47.1
|
1.0
|
C2T
|
C:AHZ500
|
3.6
|
48.3
|
1.0
|
C1M
|
C:AHZ500
|
3.7
|
46.0
|
1.0
|
OD1
|
A:ASP234
|
3.8
|
41.7
|
1.0
|
C1R
|
C:AHZ500
|
3.9
|
50.2
|
1.0
|
ND1
|
C:HIS249
|
4.5
|
43.8
|
1.0
|
CD
|
A:PRO235
|
4.5
|
32.6
|
1.0
|
CZ
|
C:ARG311
|
4.5
|
32.6
|
1.0
|
CG
|
C:HIS249
|
4.6
|
43.2
|
1.0
|
C5T
|
C:AHZ500
|
4.9
|
46.3
|
1.0
|
CA
|
A:ASP234
|
5.0
|
35.5
|
1.0
|
|
Iron binding site 4 out
of 16 in 3jsk
Go back to
Iron Binding Sites List in 3jsk
Iron binding site 4 out
of 16 in the Thiazole Synthase From Neurospora Crassa
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Thiazole Synthase From Neurospora Crassa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe345
b:97.7
occ:1.00
|
N3T
|
D:AHZ500
|
2.4
|
52.4
|
1.0
|
NE2
|
D:HIS249
|
2.7
|
45.6
|
1.0
|
C4T
|
D:AHZ500
|
3.2
|
51.9
|
1.0
|
C1M
|
D:AHZ500
|
3.2
|
52.8
|
1.0
|
NH2
|
D:ARG311
|
3.3
|
34.0
|
1.0
|
O1R
|
D:AHZ500
|
3.4
|
57.5
|
1.0
|
C2T
|
D:AHZ500
|
3.4
|
54.4
|
1.0
|
CD2
|
D:HIS249
|
3.5
|
45.2
|
1.0
|
OD1
|
B:ASP234
|
3.6
|
38.3
|
1.0
|
CE1
|
D:HIS249
|
3.8
|
46.0
|
1.0
|
C1R
|
D:AHZ500
|
3.9
|
56.5
|
1.0
|
CD
|
B:PRO235
|
4.4
|
32.7
|
1.0
|
C5T
|
D:AHZ500
|
4.5
|
51.7
|
1.0
|
CZ
|
D:ARG311
|
4.6
|
34.6
|
1.0
|
CG
|
D:HIS249
|
4.7
|
45.7
|
1.0
|
CG
|
B:ASP234
|
4.8
|
37.7
|
1.0
|
CA
|
B:ASP234
|
4.8
|
35.0
|
1.0
|
S1T
|
D:AHZ500
|
4.9
|
52.2
|
1.0
|
ND1
|
D:HIS249
|
4.9
|
45.8
|
1.0
|
|
Iron binding site 5 out
of 16 in 3jsk
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Iron Binding Sites List in 3jsk
Iron binding site 5 out
of 16 in the Thiazole Synthase From Neurospora Crassa
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Thiazole Synthase From Neurospora Crassa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe345
b:0.0
occ:1.00
|
N3T
|
E:AHZ500
|
2.5
|
55.3
|
1.0
|
NE2
|
E:HIS249
|
2.6
|
43.1
|
1.0
|
C4T
|
E:AHZ500
|
3.3
|
54.1
|
1.0
|
O1R
|
E:AHZ500
|
3.3
|
58.5
|
1.0
|
C1M
|
E:AHZ500
|
3.4
|
54.1
|
1.0
|
CE1
|
E:HIS249
|
3.4
|
43.4
|
1.0
|
C2T
|
E:AHZ500
|
3.5
|
55.9
|
1.0
|
CD2
|
E:HIS249
|
3.7
|
43.8
|
1.0
|
NH2
|
E:ARG311
|
3.9
|
30.8
|
1.0
|
C1R
|
E:AHZ500
|
3.9
|
57.4
|
1.0
|
OD1
|
D:ASP234
|
3.9
|
41.0
|
1.0
|
ND1
|
E:HIS249
|
4.6
|
43.9
|
1.0
|
C5T
|
E:AHZ500
|
4.6
|
53.6
|
1.0
|
CD
|
D:PRO235
|
4.7
|
32.4
|
1.0
|
CG
|
E:HIS249
|
4.8
|
44.2
|
1.0
|
S1T
|
E:AHZ500
|
5.0
|
53.5
|
1.0
|
|
Iron binding site 6 out
of 16 in 3jsk
Go back to
Iron Binding Sites List in 3jsk
Iron binding site 6 out
of 16 in the Thiazole Synthase From Neurospora Crassa
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Thiazole Synthase From Neurospora Crassa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Fe345
b:88.7
occ:1.00
|
N3T
|
F:AHZ500
|
2.7
|
46.0
|
1.0
|
NE2
|
F:HIS249
|
2.7
|
43.0
|
1.0
|
O1R
|
F:AHZ500
|
3.3
|
49.5
|
1.0
|
C4T
|
F:AHZ500
|
3.5
|
46.4
|
1.0
|
CE1
|
F:HIS249
|
3.5
|
43.3
|
1.0
|
C1M
|
F:AHZ500
|
3.6
|
46.3
|
1.0
|
C2T
|
F:AHZ500
|
3.6
|
46.9
|
1.0
|
CD2
|
F:HIS249
|
3.7
|
42.8
|
1.0
|
OD1
|
G:ASP234
|
3.8
|
39.8
|
1.0
|
C1R
|
F:AHZ500
|
3.9
|
48.6
|
1.0
|
NH2
|
F:ARG311
|
4.0
|
31.0
|
1.0
|
CD
|
G:PRO235
|
4.7
|
33.8
|
1.0
|
ND1
|
F:HIS249
|
4.7
|
44.1
|
1.0
|
CG
|
F:HIS249
|
4.8
|
43.5
|
1.0
|
C5T
|
F:AHZ500
|
4.8
|
45.4
|
1.0
|
CA
|
G:ASP234
|
4.9
|
34.3
|
1.0
|
O
|
G:MET233
|
4.9
|
31.8
|
1.0
|
CG
|
G:ASP234
|
5.0
|
39.9
|
1.0
|
|
Iron binding site 7 out
of 16 in 3jsk
Go back to
Iron Binding Sites List in 3jsk
Iron binding site 7 out
of 16 in the Thiazole Synthase From Neurospora Crassa
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Thiazole Synthase From Neurospora Crassa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Fe345
b:87.9
occ:1.00
|
NE2
|
G:HIS249
|
2.3
|
44.6
|
1.0
|
N3T
|
G:AHZ500
|
2.4
|
50.8
|
1.0
|
CE1
|
G:HIS249
|
3.1
|
44.9
|
1.0
|
C4T
|
G:AHZ500
|
3.2
|
49.5
|
1.0
|
O1R
|
G:AHZ500
|
3.3
|
51.6
|
1.0
|
C1M
|
G:AHZ500
|
3.3
|
51.3
|
1.0
|
CD2
|
G:HIS249
|
3.4
|
44.2
|
1.0
|
C2T
|
G:AHZ500
|
3.5
|
50.8
|
1.0
|
OD1
|
C:ASP234
|
3.6
|
41.3
|
1.0
|
C1R
|
G:AHZ500
|
3.9
|
51.3
|
1.0
|
NH2
|
G:ARG311
|
3.9
|
31.0
|
1.0
|
ND1
|
G:HIS249
|
4.3
|
45.2
|
1.0
|
CG
|
G:HIS249
|
4.5
|
45.0
|
1.0
|
C5T
|
G:AHZ500
|
4.6
|
49.0
|
1.0
|
CD
|
C:PRO235
|
4.6
|
33.5
|
1.0
|
CG
|
C:ASP234
|
4.8
|
38.6
|
1.0
|
S1T
|
G:AHZ500
|
4.9
|
48.6
|
1.0
|
CA
|
C:ASP234
|
4.9
|
33.6
|
1.0
|
|
Iron binding site 8 out
of 16 in 3jsk
Go back to
Iron Binding Sites List in 3jsk
Iron binding site 8 out
of 16 in the Thiazole Synthase From Neurospora Crassa
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Thiazole Synthase From Neurospora Crassa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Fe345
b:0.0
occ:1.00
|
NE2
|
H:HIS249
|
2.3
|
45.2
|
1.0
|
N3T
|
H:AHZ500
|
2.6
|
57.1
|
1.0
|
CE1
|
H:HIS249
|
3.1
|
46.1
|
1.0
|
CD2
|
H:HIS249
|
3.4
|
45.7
|
1.0
|
C4T
|
H:AHZ500
|
3.4
|
55.9
|
1.0
|
C1M
|
H:AHZ500
|
3.4
|
55.0
|
1.0
|
NH2
|
H:ARG311
|
3.5
|
31.6
|
1.0
|
C2T
|
H:AHZ500
|
3.6
|
58.1
|
1.0
|
O1R
|
H:AHZ500
|
3.8
|
59.9
|
1.0
|
C1R
|
H:AHZ500
|
4.1
|
60.0
|
1.0
|
OD1
|
E:ASP234
|
4.2
|
39.9
|
1.0
|
ND1
|
H:HIS249
|
4.2
|
46.2
|
1.0
|
CG
|
H:HIS249
|
4.4
|
46.3
|
1.0
|
CZ
|
H:ARG311
|
4.7
|
33.8
|
1.0
|
C5T
|
H:AHZ500
|
4.7
|
54.1
|
1.0
|
CD
|
E:PRO235
|
5.0
|
32.6
|
1.0
|
|
Iron binding site 9 out
of 16 in 3jsk
Go back to
Iron Binding Sites List in 3jsk
Iron binding site 9 out
of 16 in the Thiazole Synthase From Neurospora Crassa
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Thiazole Synthase From Neurospora Crassa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Fe345
b:0.0
occ:1.00
|
NE2
|
I:HIS249
|
2.3
|
44.3
|
1.0
|
N3T
|
I:AHZ500
|
2.4
|
46.2
|
1.0
|
CE1
|
I:HIS249
|
3.1
|
44.3
|
1.0
|
C4T
|
I:AHZ500
|
3.3
|
45.4
|
1.0
|
O1R
|
I:AHZ500
|
3.3
|
49.6
|
1.0
|
CD2
|
I:HIS249
|
3.4
|
44.5
|
1.0
|
C1M
|
I:AHZ500
|
3.4
|
46.5
|
1.0
|
C2T
|
I:AHZ500
|
3.4
|
46.9
|
1.0
|
OD1
|
N:ASP234
|
3.7
|
40.8
|
1.0
|
C1R
|
I:AHZ500
|
3.8
|
47.5
|
1.0
|
NH2
|
I:ARG311
|
4.0
|
31.9
|
1.0
|
ND1
|
I:HIS249
|
4.3
|
45.3
|
1.0
|
CG
|
I:HIS249
|
4.5
|
45.2
|
1.0
|
C5T
|
I:AHZ500
|
4.6
|
45.4
|
1.0
|
CD
|
N:PRO235
|
4.8
|
33.6
|
1.0
|
O2R
|
I:AHZ500
|
4.9
|
47.1
|
1.0
|
S1T
|
I:AHZ500
|
4.9
|
45.5
|
1.0
|
CG
|
N:ASP234
|
4.9
|
38.6
|
1.0
|
CA
|
N:ASP234
|
5.0
|
33.9
|
1.0
|
|
Iron binding site 10 out
of 16 in 3jsk
Go back to
Iron Binding Sites List in 3jsk
Iron binding site 10 out
of 16 in the Thiazole Synthase From Neurospora Crassa
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Thiazole Synthase From Neurospora Crassa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Fe345
b:0.0
occ:1.00
|
N3T
|
J:AHZ500
|
2.4
|
54.8
|
1.0
|
NE2
|
J:HIS249
|
2.7
|
44.6
|
1.0
|
O1R
|
J:AHZ500
|
2.9
|
55.7
|
1.0
|
C2T
|
J:AHZ500
|
3.2
|
54.4
|
1.0
|
C4T
|
J:AHZ500
|
3.3
|
54.4
|
1.0
|
NH2
|
J:ARG311
|
3.5
|
31.7
|
1.0
|
C1R
|
J:AHZ500
|
3.5
|
55.5
|
1.0
|
C1M
|
J:AHZ500
|
3.6
|
53.5
|
1.0
|
CE1
|
J:HIS249
|
3.6
|
44.8
|
1.0
|
OD1
|
P:ASP234
|
3.7
|
41.5
|
1.0
|
CD2
|
J:HIS249
|
3.7
|
44.7
|
1.0
|
CD
|
P:PRO235
|
4.4
|
31.8
|
1.0
|
C5T
|
J:AHZ500
|
4.6
|
53.2
|
1.0
|
CZ
|
J:ARG311
|
4.6
|
35.2
|
1.0
|
S1T
|
J:AHZ500
|
4.7
|
53.6
|
1.0
|
O2R
|
J:AHZ500
|
4.7
|
57.2
|
1.0
|
ND1
|
J:HIS249
|
4.8
|
45.5
|
1.0
|
CG
|
J:HIS249
|
4.8
|
45.4
|
1.0
|
CG
|
P:ASP234
|
4.8
|
39.1
|
1.0
|
CA
|
P:ASP234
|
4.9
|
34.2
|
1.0
|
|
Reference:
Y.N.Kang,
S.Bale,
T.P.Begley,
S.E.Ealick.
Crystal Structure of Thiazole Synthase THI4 From Neurospora Crassa To Be Published.
Page generated: Sun Aug 4 13:35:11 2024
|