Atomistry » Iron » PDB 3jbt-3k9y » 3k0v
Atomistry »
  Iron »
    PDB 3jbt-3k9y »
      3k0v »

Iron in PDB 3k0v: Removal of Sugars and Sugars-Like Molecules From the Solution By C- Lobe of Lactoferrin: Crystal Structure of the Complex of C-Lobe with Beta-D-Glucopyranosyl-(1->4)-Beta-D-Galactopyranosyl-(1->4)-Alpha-D- Glucopyranose at 1.9 A Resolution

Protein crystallography data

The structure of Removal of Sugars and Sugars-Like Molecules From the Solution By C- Lobe of Lactoferrin: Crystal Structure of the Complex of C-Lobe with Beta-D-Glucopyranosyl-(1->4)-Beta-D-Galactopyranosyl-(1->4)-Alpha-D- Glucopyranose at 1.9 A Resolution, PDB code: 3k0v was solved by R.Mir, G.Vikram, M.Sinha, N.Singh, S.Sharma, P.Kaur, T.P.Singh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 62.00 / 1.91
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 61.810, 50.134, 65.545, 90.00, 107.10, 90.00
R / Rfree (%) 20.7 / 23.7

Other elements in 3k0v:

The structure of Removal of Sugars and Sugars-Like Molecules From the Solution By C- Lobe of Lactoferrin: Crystal Structure of the Complex of C-Lobe with Beta-D-Glucopyranosyl-(1->4)-Beta-D-Galactopyranosyl-(1->4)-Alpha-D- Glucopyranose at 1.9 A Resolution also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Removal of Sugars and Sugars-Like Molecules From the Solution By C- Lobe of Lactoferrin: Crystal Structure of the Complex of C-Lobe with Beta-D-Glucopyranosyl-(1->4)-Beta-D-Galactopyranosyl-(1->4)-Alpha-D- Glucopyranose at 1.9 A Resolution (pdb code 3k0v). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Removal of Sugars and Sugars-Like Molecules From the Solution By C- Lobe of Lactoferrin: Crystal Structure of the Complex of C-Lobe with Beta-D-Glucopyranosyl-(1->4)-Beta-D-Galactopyranosyl-(1->4)-Alpha-D- Glucopyranose at 1.9 A Resolution, PDB code: 3k0v:

Iron binding site 1 out of 1 in 3k0v

Go back to Iron Binding Sites List in 3k0v
Iron binding site 1 out of 1 in the Removal of Sugars and Sugars-Like Molecules From the Solution By C- Lobe of Lactoferrin: Crystal Structure of the Complex of C-Lobe with Beta-D-Glucopyranosyl-(1->4)-Beta-D-Galactopyranosyl-(1->4)-Alpha-D- Glucopyranose at 1.9 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Removal of Sugars and Sugars-Like Molecules From the Solution By C- Lobe of Lactoferrin: Crystal Structure of the Complex of C-Lobe with Beta-D-Glucopyranosyl-(1->4)-Beta-D-Galactopyranosyl-(1->4)-Alpha-D- Glucopyranose at 1.9 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe84

b:13.2
occ:1.00
OH A:TYR433 2.0 13.2 1.0
OH A:TYR526 2.0 12.9 1.0
OD1 A:ASP395 2.1 14.1 1.0
O2 A:CO385 2.2 14.3 1.0
O1 A:CO385 2.2 13.3 1.0
NE2 A:HIS595 2.3 10.4 1.0
C A:CO385 2.5 13.5 1.0
CZ A:TYR433 3.0 15.4 1.0
CD2 A:HIS595 3.1 9.9 1.0
CZ A:TYR526 3.1 11.7 1.0
CG A:ASP395 3.2 13.4 1.0
CE1 A:HIS595 3.3 10.5 1.0
CE1 A:TYR433 3.6 13.9 1.0
CB A:ASP395 3.7 12.8 1.0
O3 A:CO385 3.8 12.6 1.0
O A:HOH820 3.8 12.0 1.0
CE1 A:TYR526 3.8 11.2 1.0
O A:HOH851 3.9 13.6 1.0
CE2 A:TYR433 4.0 15.2 1.0
CE2 A:TYR526 4.1 10.4 1.0
OD2 A:ASP395 4.2 13.5 1.0
CG A:HIS595 4.3 11.9 1.0
CB A:THR464 4.4 11.8 1.0
NH2 A:ARG463 4.4 15.8 1.0
ND1 A:HIS595 4.4 12.8 1.0
CA A:ASP395 4.4 13.0 1.0
N A:THR464 4.6 11.8 1.0
N A:ALA465 4.7 12.5 1.0
OG1 A:THR464 4.7 12.9 1.0
NE A:ARG463 4.7 15.4 1.0
CD1 A:TYR433 4.8 15.1 1.0
N A:GLY396 5.0 12.8 1.0
CA A:THR464 5.0 12.2 1.0

Reference:

R.Mir, R.P.Kumar, N.Singh, G.P.Vikram, M.Sinha, A.Bhushan, P.Kaur, A.Srinivasan, S.Sharma, T.P.Singh. Specific Interactions of C-Terminal Half (C-Lobe) of Lactoferrin Protein with Edible Sugars: Binding and Structural Studies with Implications on Diabetes. Int.J.Biol.Macromol. V. 47 50 2010.
ISSN: ISSN 0141-8130
PubMed: 20371371
DOI: 10.1016/J.IJBIOMAC.2010.03.021
Page generated: Sun Dec 13 15:10:00 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy