Iron in PDB 3ks5: Crystal Structure of Putative Glycerophosphoryl Diester Phosphodiesterase (17743486) From Agrobacterium Tumefaciens Str. C58 (Dupont) at 2.05 A Resolution

The structure of Crystal Structure of Putative Glycerophosphoryl Diester Phosphodiesterase (17743486) From Agrobacterium Tumefaciens Str. C58 (Dupont) at 2.05 A Resolution, PDB code: 3ks5 was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.07 / 2.05
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	84.153, 84.153, 214.882, 90.00, 90.00, 90.00
R / Rfree (%)	21.2 / 24.4

The binding sites of Iron atom in the Crystal Structure of Putative Glycerophosphoryl Diester Phosphodiesterase (17743486) From Agrobacterium Tumefaciens Str. C58 (Dupont) at 2.05 A Resolution (pdb code 3ks5). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of Putative Glycerophosphoryl Diester Phosphodiesterase (17743486) From Agrobacterium Tumefaciens Str. C58 (Dupont) at 2.05 A Resolution, PDB code: 3ks5:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the Crystal Structure of Putative Glycerophosphoryl Diester Phosphodiesterase (17743486) From Agrobacterium Tumefaciens Str. C58 (Dupont) at 2.05 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Putative Glycerophosphoryl Diester Phosphodiesterase (17743486) From Agrobacterium Tumefaciens Str. C58 (Dupont) at 2.05 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe250 b:56.3 occ:1.00 OXT A:ACT252 2.2 44.0 1.0 OD1 A:ASP36 2.2 39.9 1.0 OE1 A:GLU104 2.4 45.0 1.0 OE2 A:GLU34 2.4 43.0 1.0 O A:HOH268 2.5 35.8 1.0 OXT A:ACT251 2.7 40.5 1.0 CG A:ASP36 3.2 43.0 1.0 CD A:GLU34 3.2 46.9 1.0 OE1 A:GLU34 3.4 39.8 1.0 C A:ACT252 3.4 44.3 1.0 C A:ACT251 3.4 46.7 1.0 OD2 A:ASP36 3.4 42.6 1.0 CD A:GLU104 3.5 46.9 1.0 O A:ACT251 3.8 43.1 1.0 CB A:GLU104 3.9 46.0 1.0 CE A:LYS106 4.0 40.5 1.0 NZ A:LYS106 4.1 36.9 1.0 CH3 A:ACT252 4.1 41.2 1.0 O A:HOH285 4.1 42.7 1.0 NE2 A:HIS7 4.2 42.9 1.0 CG A:GLU104 4.3 43.4 1.0 OE2 A:GLU104 4.3 45.7 1.0 O A:ACT252 4.4 42.7 1.0 CH3 A:ACT251 4.5 44.9 1.0 CD2 A:HIS49 4.5 44.0 1.0 CG A:GLU34 4.6 39.6 1.0 CB A:ASP36 4.6 41.1 1.0 CD2 A:HIS7 4.6 47.0 1.0 O A:PHE35 4.9 43.5 1.0 C A:PHE35 5.0 42.2 1.0

Iron binding site 2 out of 2 in the Crystal Structure of Putative Glycerophosphoryl Diester Phosphodiesterase (17743486) From Agrobacterium Tumefaciens Str. C58 (Dupont) at 2.05 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Putative Glycerophosphoryl Diester Phosphodiesterase (17743486) From Agrobacterium Tumefaciens Str. C58 (Dupont) at 2.05 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe250 b:43.9 occ:1.00 OD1 B:ASP36 2.3 36.8 1.0 OE1 B:GLU104 2.3 34.4 1.0 O B:ACT252 2.4 35.5 1.0 O B:HOH260 2.4 29.7 1.0 OE2 B:GLU34 2.5 34.0 1.0 O B:ACT251 2.5 34.8 1.0 CD B:GLU34 3.3 41.0 1.0 CG B:ASP36 3.4 39.9 1.0 C B:ACT251 3.4 37.4 1.0 OE1 B:GLU34 3.4 30.5 1.0 CD B:GLU104 3.4 44.5 1.0 C B:ACT252 3.5 39.3 1.0 OD2 B:ASP36 3.8 38.5 1.0 OXT B:ACT251 3.9 33.3 1.0 CB B:GLU104 4.0 38.6 1.0 CH3 B:ACT252 4.1 39.7 1.0 CE B:LYS106 4.1 42.2 1.0 NE2 B:HIS7 4.2 36.3 1.0 NZ B:LYS106 4.2 31.1 1.0 O B:HOH335 4.2 39.7 1.0 OE2 B:GLU104 4.3 40.7 1.0 CG B:GLU104 4.3 38.6 1.0 CH3 B:ACT251 4.4 35.0 1.0 OXT B:ACT252 4.5 39.3 1.0 CD2 B:HIS49 4.6 37.8 1.0 CD2 B:HIS7 4.7 42.7 1.0 CG B:GLU34 4.7 36.6 1.0 CB B:ASP36 4.7 40.4 1.0

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.