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Iron in PDB 3ktc: Crystal Structure of Putative Sugar Isomerase (YP_050048.1) From Erwinia Carotovora Atroseptica SCRI1043 at 1.54 A Resolution

Enzymatic activity of Crystal Structure of Putative Sugar Isomerase (YP_050048.1) From Erwinia Carotovora Atroseptica SCRI1043 at 1.54 A Resolution

All present enzymatic activity of Crystal Structure of Putative Sugar Isomerase (YP_050048.1) From Erwinia Carotovora Atroseptica SCRI1043 at 1.54 A Resolution:
5.3.1.5;

Protein crystallography data

The structure of Crystal Structure of Putative Sugar Isomerase (YP_050048.1) From Erwinia Carotovora Atroseptica SCRI1043 at 1.54 A Resolution, PDB code: 3ktc was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.32 / 1.54
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 79.653, 79.653, 194.406, 90.00, 90.00, 120.00
R / Rfree (%) 13.6 / 15.7

Other elements in 3ktc:

The structure of Crystal Structure of Putative Sugar Isomerase (YP_050048.1) From Erwinia Carotovora Atroseptica SCRI1043 at 1.54 A Resolution also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms
Chlorine (Cl) 2 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Putative Sugar Isomerase (YP_050048.1) From Erwinia Carotovora Atroseptica SCRI1043 at 1.54 A Resolution (pdb code 3ktc). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 6 binding sites of Iron where determined in the Crystal Structure of Putative Sugar Isomerase (YP_050048.1) From Erwinia Carotovora Atroseptica SCRI1043 at 1.54 A Resolution, PDB code: 3ktc:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6;

Iron binding site 1 out of 6 in 3ktc

Go back to Iron Binding Sites List in 3ktc
Iron binding site 1 out of 6 in the Crystal Structure of Putative Sugar Isomerase (YP_050048.1) From Erwinia Carotovora Atroseptica SCRI1043 at 1.54 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Putative Sugar Isomerase (YP_050048.1) From Erwinia Carotovora Atroseptica SCRI1043 at 1.54 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe333

b:24.2
occ:0.40
 FE A:FE333 0.0 24.2 0.4
FE A:FE333 1.7 12.8 0.4
O B:HOH733 2.0 14.2 0.5
OD2 A:ASP238 2.2 28.1 1.0
OD1 A:ASP238 2.3 24.7 1.0
OD1 A:ASP240 2.3 30.9 1.0
O A:HOH734 2.5 17.4 0.5
CG A:ASP238 2.6 26.1 1.0
NE2 A:HIS204 2.7 28.9 1.0
CG A:ASP240 3.0 28.5 1.0
OD2 A:ASP240 3.1 30.5 1.0
CD2 A:HIS204 3.3 27.0 1.0
O3 A:UNL337 3.3 27.1 1.0
OD2 A:ASP201 3.6 25.3 1.0
O2 A:UNL337 3.8 26.8 1.0
CE1 A:HIS204 3.8 28.7 1.0
OD2 A:ASP270 4.0 34.0 1.0
CB A:ASP238 4.1 24.7 1.0
ND2 A:ASN231 4.3 29.9 1.0
O A:HOH346 4.3 13.0 1.0
CG A:ASP201 4.3 25.1 1.0
OD1 A:ASP201 4.4 25.8 1.0
FE A:FE334 4.4 33.2 0.8
CG A:ASP270 4.5 28.6 1.0
CB A:ASP240 4.5 25.2 1.0
CG A:HIS204 4.5 25.9 1.0
O1 A:UNL337 4.6 35.1 1.0
OD1 A:ASP270 4.7 33.5 1.0
O5 A:UNL337 4.7 43.4 1.0
O A:ASP270 4.7 25.8 1.0
ND1 A:HIS204 4.8 28.3 1.0
O A:ASP238 4.8 24.7 1.0
CG A:ASN231 4.8 26.9 1.0
CA A:ASP238 4.9 23.3 1.0
OD1 A:ASN231 5.0 26.0 1.0
CE A:LYS168 5.0 24.5 1.0

Iron binding site 2 out of 6 in 3ktc

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Iron binding site 2 out of 6 in the Crystal Structure of Putative Sugar Isomerase (YP_050048.1) From Erwinia Carotovora Atroseptica SCRI1043 at 1.54 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Putative Sugar Isomerase (YP_050048.1) From Erwinia Carotovora Atroseptica SCRI1043 at 1.54 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe333

b:12.8
occ:0.40
 FE A:FE333 0.0 12.8 0.4
FE A:FE333 1.7 24.2 0.4
O A:HOH734 2.0 17.4 0.5
NE2 A:HIS204 2.1 28.9 1.0
O2 A:UNL337 2.1 26.8 1.0
OD2 A:ASP238 2.2 28.1 1.0
O3 A:UNL337 2.2 27.1 1.0
CE1 A:HIS204 2.9 28.7 1.0
CG A:ASP238 3.1 26.1 1.0
O1 A:UNL337 3.1 35.1 1.0
CD2 A:HIS204 3.2 27.0 1.0
O B:HOH733 3.3 14.2 0.5
OD1 A:ASP238 3.4 24.7 1.0
OD1 A:ASP240 3.8 30.9 1.0
O5 A:UNL337 3.9 43.4 1.0
OD2 A:ASP240 3.9 30.5 1.0
CE A:LYS168 3.9 24.5 1.0
OD2 A:ASP201 4.0 25.3 1.0
OD2 A:ASP270 4.0 34.0 1.0
ND1 A:HIS204 4.1 28.3 1.0
FE A:FE334 4.1 33.2 0.8
NZ A:LYS168 4.1 24.6 1.0
CG A:HIS204 4.3 25.9 1.0
CG A:ASP240 4.3 28.5 1.0
CD A:LYS168 4.3 22.9 1.0
CB A:ASP238 4.4 24.7 1.0
OE2 A:GLU166 4.7 28.6 1.0
CG A:ASP201 4.7 25.1 1.0
O4 A:UNL337 4.8 33.0 1.0
CG A:ASP270 4.8 28.6 1.0
CG A:LYS168 4.9 24.8 1.0
OD1 A:ASP270 5.0 33.5 1.0

Iron binding site 3 out of 6 in 3ktc

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Iron binding site 3 out of 6 in the Crystal Structure of Putative Sugar Isomerase (YP_050048.1) From Erwinia Carotovora Atroseptica SCRI1043 at 1.54 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure of Putative Sugar Isomerase (YP_050048.1) From Erwinia Carotovora Atroseptica SCRI1043 at 1.54 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe334

b:33.2
occ:0.80
 OD2 A:ASP270 1.9 34.0 1.0
OE2 A:GLU166 2.0 28.6 1.0
OD2 A:ASP229 2.1 38.8 1.0
OD2 A:ASP201 2.2 25.3 1.0
O3 A:UNL337 2.6 27.1 1.0
O4 A:UNL337 2.9 33.0 1.0
CG A:ASP270 2.9 28.6 1.0
CD A:GLU166 3.0 32.0 1.0
CG A:ASP229 3.1 33.0 1.0
CG A:ASP201 3.2 25.1 1.0
CB A:ASP270 3.4 27.1 1.0
OE1 A:GLU166 3.5 34.9 1.0
CB A:ASP229 3.5 27.0 1.0
CB A:ASP201 3.6 23.9 1.0
O B:HOH733 3.7 14.2 0.5
O A:HOH347 3.9 31.7 1.0
CE1 A:HIS204 4.0 28.7 1.0
OD1 A:ASP270 4.0 33.5 1.0
O1 A:UNL337 4.1 35.1 1.0
FE A:FE333 4.1 12.8 0.4
OD1 A:ASP229 4.1 42.2 1.0
NE2 A:HIS204 4.1 28.9 1.0
CG A:GLU166 4.3 27.1 1.0
O5 A:UNL337 4.3 43.4 1.0
OD1 A:ASP201 4.3 25.8 1.0
FE A:FE333 4.4 24.2 0.4
ND1 A:HIS204 4.7 28.3 1.0
CA A:ASP201 4.8 22.6 1.0
O A:HOH734 4.8 17.4 0.5
CD1 A:LEU199 4.9 29.0 1.0
CA A:ASP270 4.9 25.9 1.0
CD2 A:HIS204 5.0 27.0 1.0

Iron binding site 4 out of 6 in 3ktc

Go back to Iron Binding Sites List in 3ktc
Iron binding site 4 out of 6 in the Crystal Structure of Putative Sugar Isomerase (YP_050048.1) From Erwinia Carotovora Atroseptica SCRI1043 at 1.54 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure of Putative Sugar Isomerase (YP_050048.1) From Erwinia Carotovora Atroseptica SCRI1043 at 1.54 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe333

b:10.6
occ:0.40
 FE B:FE333 0.0 10.6 0.4
FE B:FE333 1.7 23.2 0.4
O A:HOH734 2.0 16.4 0.5
NE2 B:HIS204 2.1 27.2 1.0
O2 B:UNL337 2.1 24.7 1.0
O1 B:UNL337 2.2 25.2 1.0
OD2 B:ASP238 2.2 26.7 1.0
O B:HOH733 2.8 24.8 0.5
CE1 B:HIS204 2.9 26.9 1.0
O3 B:UNL337 3.0 37.8 1.0
CG B:ASP238 3.1 25.3 1.0
CD2 B:HIS204 3.2 25.6 1.0
OD1 B:ASP238 3.4 26.5 1.0
O B:HOH416 3.9 35.4 1.0
OD1 B:ASP240 3.9 31.6 1.0
OD2 B:ASP270 3.9 33.6 1.0
OD2 B:ASP240 3.9 28.1 1.0
CE B:LYS168 3.9 25.3 1.0
OD2 B:ASP201 3.9 26.8 1.0
NZ B:LYS168 4.0 27.9 1.0
ND1 B:HIS204 4.1 28.3 1.0
FE B:FE334 4.1 31.7 0.8
CG B:HIS204 4.3 25.5 1.0
CG B:ASP240 4.3 26.7 1.0
CD B:LYS168 4.4 24.7 1.0
CB B:ASP238 4.4 24.9 1.0
OE2 B:GLU166 4.7 29.3 1.0
O4 B:UNL337 4.7 31.8 1.0
O5 B:UNL337 4.7 47.4 1.0
CG B:ASP270 4.7 29.9 1.0
CG B:ASP201 4.8 27.6 1.0
CG B:LYS168 5.0 25.6 1.0

Iron binding site 5 out of 6 in 3ktc

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Iron binding site 5 out of 6 in the Crystal Structure of Putative Sugar Isomerase (YP_050048.1) From Erwinia Carotovora Atroseptica SCRI1043 at 1.54 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Crystal Structure of Putative Sugar Isomerase (YP_050048.1) From Erwinia Carotovora Atroseptica SCRI1043 at 1.54 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe333

b:23.2
occ:0.40
 FE B:FE333 0.0 23.2 0.4
FE B:FE333 1.7 10.6 0.4
O B:HOH733 1.7 24.8 0.5
OD2 B:ASP238 2.2 26.7 1.0
OD1 B:ASP238 2.3 26.5 1.0
OD1 B:ASP240 2.3 31.6 1.0
O A:HOH734 2.5 16.4 0.5
CG B:ASP238 2.5 25.3 1.0
NE2 B:HIS204 2.6 27.2 1.0
CG B:ASP240 3.1 26.7 1.0
OD2 B:ASP240 3.1 28.1 1.0
CD2 B:HIS204 3.2 25.6 1.0
O2 B:UNL337 3.3 24.7 1.0
OD2 B:ASP201 3.6 26.8 1.0
O1 B:UNL337 3.8 25.2 1.0
CE1 B:HIS204 3.8 26.9 1.0
OD2 B:ASP270 4.0 33.6 1.0
CB B:ASP238 4.0 24.9 1.0
O B:HOH349 4.2 12.8 1.0
ND2 B:ASN231 4.3 26.5 1.0
CG B:ASP201 4.4 27.6 1.0
OD1 B:ASP201 4.4 26.6 1.0
FE B:FE334 4.5 31.7 0.8
CG B:ASP270 4.5 29.9 1.0
CG B:HIS204 4.5 25.5 1.0
CB B:ASP240 4.5 23.8 1.0
O3 B:UNL337 4.6 37.8 1.0
O B:HOH416 4.6 35.4 1.0
ND1 B:HIS204 4.8 28.3 1.0
OD1 B:ASP270 4.8 30.9 1.0
O B:ASP270 4.8 25.3 1.0
O B:ASP238 4.8 24.8 1.0
CA B:ASP238 4.8 24.3 1.0
CG B:ASN231 4.9 28.8 1.0
CE B:LYS168 4.9 25.3 1.0

Iron binding site 6 out of 6 in 3ktc

Go back to Iron Binding Sites List in 3ktc
Iron binding site 6 out of 6 in the Crystal Structure of Putative Sugar Isomerase (YP_050048.1) From Erwinia Carotovora Atroseptica SCRI1043 at 1.54 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Crystal Structure of Putative Sugar Isomerase (YP_050048.1) From Erwinia Carotovora Atroseptica SCRI1043 at 1.54 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe334

b:31.7
occ:0.80
 OD2 B:ASP270 1.9 33.6 1.0
OE2 B:GLU166 2.0 29.3 1.0
OD2 B:ASP229 2.1 39.5 1.0
OD2 B:ASP201 2.2 26.8 1.0
O2 B:UNL337 2.6 24.7 1.0
O4 B:UNL337 2.8 31.8 1.0
CG B:ASP270 2.9 29.9 1.0
CD B:GLU166 3.0 35.0 1.0
CG B:ASP229 3.1 31.4 1.0
CG B:ASP201 3.3 27.6 1.0
O B:HOH733 3.4 24.8 0.5
CB B:ASP270 3.4 25.3 1.0
OE1 B:GLU166 3.4 34.9 1.0
CB B:ASP229 3.5 27.2 1.0
CB B:ASP201 3.7 26.3 1.0
O B:HOH581 3.9 26.3 1.0
CE1 B:HIS204 4.0 26.9 1.0
OD1 B:ASP270 4.0 30.9 1.0
FE B:FE333 4.1 10.6 0.4
OD1 B:ASP229 4.1 40.2 1.0
O3 B:UNL337 4.2 37.8 1.0
NE2 B:HIS204 4.2 27.2 1.0
O B:HOH416 4.2 35.4 1.0
CG B:GLU166 4.3 26.5 1.0
O5 B:UNL337 4.3 47.4 1.0
OD1 B:ASP201 4.4 26.6 1.0
FE B:FE333 4.5 23.2 0.4
ND1 B:HIS204 4.7 28.3 1.0
O A:HOH734 4.8 16.4 0.5
CA B:ASP201 4.9 24.9 1.0
CD1 B:LEU199 4.9 29.3 1.0
CA B:ASP270 4.9 24.2 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Sun Aug 4 14:00:36 2024

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