Iron in PDB 3kv9: Structure of KIAA1718 Jumonji Domain

The structure of Structure of KIAA1718 Jumonji Domain, PDB code: 3kv9 was solved by J.R.Horton, A.K.Upadhyay, H.H.Qi, X.Zhang, Y.Shi, X.Cheng, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.32 / 2.29
Space group	P 61 2 2
Cell size a, b, c (Å), α, β, γ (°)	77.900, 77.900, 289.700, 90.00, 90.00, 120.00
R / Rfree (%)	22.2 / 25.8

The binding sites of Iron atom in the Structure of KIAA1718 Jumonji Domain (pdb code 3kv9). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Structure of KIAA1718 Jumonji Domain, PDB code: 3kv9:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the Structure of KIAA1718 Jumonji Domain


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of KIAA1718 Jumonji Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe489 b:64.4 occ:1.00 NE2 A:HIS354 2.4 36.7 1.0 NE2 A:HIS282 2.4 28.6 1.0 OD1 A:ASP284 2.5 43.5 1.0 CE1 A:HIS354 3.1 36.4 1.0 CG A:ASP284 3.2 40.4 1.0 OD2 A:ASP284 3.3 44.2 1.0 CE1 A:HIS282 3.3 28.4 1.0 CD2 A:HIS282 3.5 27.4 1.0 CD2 A:HIS354 3.5 34.9 1.0 ND1 A:HIS354 4.3 37.1 1.0 ND1 A:HIS282 4.4 28.6 1.0 CG A:HIS354 4.5 34.1 1.0 CG A:HIS282 4.5 28.3 1.0 CB A:ASP284 4.6 35.9 1.0 CA A:ASP284 4.9 32.7 1.0 N A:ASP284 4.9 31.8 1.0

Iron binding site 2 out of 2 in the Structure of KIAA1718 Jumonji Domain


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of KIAA1718 Jumonji Domain within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe490 b:41.2 occ:1.00 OG A:SER249 3.0 33.7 1.0 N A:LEU370 3.1 27.4 1.0 O A:HOH532 3.1 38.3 1.0 N A:VAL251 3.2 29.0 1.0 N A:TRP250 3.4 30.4 1.0 CG2 A:VAL251 3.4 30.9 1.0 CA A:PHE369 3.6 28.6 1.0 CB A:VAL251 3.7 31.4 1.0 O A:LEU370 3.8 26.8 1.0 C A:PHE369 3.9 28.1 1.0 CB A:TRP250 4.0 27.2 1.0 CB A:PHE369 4.0 28.9 1.0 CB A:SER249 4.0 32.9 1.0 CA A:TRP250 4.0 29.4 1.0 C A:SER249 4.0 32.4 1.0 CA A:VAL251 4.1 31.1 1.0 CB A:LEU370 4.1 23.9 1.0 CA A:SER249 4.1 33.2 1.0 CA A:LEU370 4.1 27.1 1.0 C A:TRP250 4.1 29.3 1.0 C A:LEU370 4.4 26.5 1.0 CG A:LEU370 4.4 25.7 1.0 CZ A:PHE396 4.5 45.6 1.0 CE1 A:PHE396 4.5 46.6 1.0 O A:ASN368 4.7 29.3 1.0 N A:PHE369 4.8 27.9 1.0 CD1 A:LEU370 4.8 24.5 1.0 O A:SER249 5.0 32.2 1.0

J.R.Horton, A.K.Upadhyay, H.H.Qi, X.Zhang, Y.Shi, X.Cheng. Enzymatic and Structural Insights For Substrate Specificity of A Family of Jumonji Histone Lysine Demethylases. Nat.Struct.Mol.Biol. V. 17 38 2010.
ISSN: ISSN 1545-9993
PubMed: 20023638
DOI: 10.1038/NSMB.1753