Iron in PDB 3l72: Chicken Cytochrome BC1 Complex with Kresoxym-I-Dimethyl Bound
Enzymatic activity of Chicken Cytochrome BC1 Complex with Kresoxym-I-Dimethyl Bound
All present enzymatic activity of Chicken Cytochrome BC1 Complex with Kresoxym-I-Dimethyl Bound:
1.10.2.2;
Protein crystallography data
The structure of Chicken Cytochrome BC1 Complex with Kresoxym-I-Dimethyl Bound, PDB code: 3l72
was solved by
L.Huang,
Z.Zhang,
E.A.Berry,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
28.93 /
3.06
|
|
Space group
|
P 21 21 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
172.614,
181.548,
241.033,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
26.4 /
29.4
|
Other elements in 3l72:
The structure of Chicken Cytochrome BC1 Complex with Kresoxym-I-Dimethyl Bound also contains other interesting chemical elements:
Iron Binding Sites:
The binding sites of Iron atom in the Chicken Cytochrome BC1 Complex with Kresoxym-I-Dimethyl Bound
(pdb code 3l72). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 10 binding sites of Iron where determined in the
Chicken Cytochrome BC1 Complex with Kresoxym-I-Dimethyl Bound, PDB code: 3l72:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 10 in 3l72
Go back to
Iron Binding Sites List in 3l72
Iron binding site 1 out
of 10 in the Chicken Cytochrome BC1 Complex with Kresoxym-I-Dimethyl Bound
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Chicken Cytochrome BC1 Complex with Kresoxym-I-Dimethyl Bound within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe501
b:35.5
occ:1.00
|
FE
|
C:HEM501
|
0.0
|
35.5
|
1.0
|
|
NB
|
C:HEM501
|
1.9
|
35.1
|
1.0
|
|
NC
|
C:HEM501
|
1.9
|
36.8
|
1.0
|
|
NA
|
C:HEM501
|
1.9
|
37.2
|
1.0
|
|
ND
|
C:HEM501
|
1.9
|
37.9
|
1.0
|
|
NE2
|
C:HIS183
|
2.0
|
35.6
|
1.0
|
|
NE2
|
C:HIS84
|
2.0
|
39.1
|
1.0
|
|
CE1
|
C:HIS183
|
2.9
|
36.8
|
1.0
|
|
CE1
|
C:HIS84
|
2.9
|
41.3
|
1.0
|
|
C4B
|
C:HEM501
|
2.9
|
36.1
|
1.0
|
|
C1C
|
C:HEM501
|
3.0
|
36.9
|
1.0
|
|
C1A
|
C:HEM501
|
3.0
|
37.9
|
1.0
|
|
C4D
|
C:HEM501
|
3.0
|
39.1
|
1.0
|
|
C4A
|
C:HEM501
|
3.0
|
36.9
|
1.0
|
|
C4C
|
C:HEM501
|
3.0
|
36.7
|
1.0
|
|
C1B
|
C:HEM501
|
3.0
|
35.3
|
1.0
|
|
C1D
|
C:HEM501
|
3.0
|
38.8
|
1.0
|
|
CD2
|
C:HIS183
|
3.1
|
35.4
|
1.0
|
|
CD2
|
C:HIS84
|
3.1
|
40.6
|
1.0
|
|
CHC
|
C:HEM501
|
3.3
|
37.0
|
1.0
|
|
CHA
|
C:HEM501
|
3.4
|
39.3
|
1.0
|
|
CHD
|
C:HEM501
|
3.4
|
37.2
|
1.0
|
|
CHB
|
C:HEM501
|
3.4
|
36.2
|
1.0
|
|
ND1
|
C:HIS183
|
4.1
|
37.8
|
1.0
|
|
ND1
|
C:HIS84
|
4.1
|
41.6
|
1.0
|
|
CG
|
C:HIS183
|
4.2
|
34.8
|
1.0
|
|
CG
|
C:HIS84
|
4.2
|
40.9
|
1.0
|
|
C3B
|
C:HEM501
|
4.2
|
36.2
|
1.0
|
|
C2A
|
C:HEM501
|
4.2
|
37.2
|
1.0
|
|
C3A
|
C:HEM501
|
4.2
|
36.8
|
1.0
|
|
C2B
|
C:HEM501
|
4.2
|
34.5
|
1.0
|
|
C3C
|
C:HEM501
|
4.3
|
37.4
|
1.0
|
|
C2C
|
C:HEM501
|
4.3
|
37.7
|
1.0
|
|
C3D
|
C:HEM501
|
4.3
|
39.9
|
1.0
|
|
C2D
|
C:HEM501
|
4.3
|
39.3
|
1.0
|
|
CA
|
C:GLY49
|
4.9
|
33.2
|
1.0
|
|
Iron binding site 2 out
of 10 in 3l72
Go back to
Iron Binding Sites List in 3l72
Iron binding site 2 out
of 10 in the Chicken Cytochrome BC1 Complex with Kresoxym-I-Dimethyl Bound
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Chicken Cytochrome BC1 Complex with Kresoxym-I-Dimethyl Bound within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe502
b:28.7
occ:1.00
|
FE
|
C:HEM502
|
0.0
|
28.7
|
1.0
|
|
NC
|
C:HEM502
|
1.9
|
27.9
|
1.0
|
|
ND
|
C:HEM502
|
1.9
|
32.1
|
1.0
|
|
NB
|
C:HEM502
|
1.9
|
29.7
|
1.0
|
|
NA
|
C:HEM502
|
2.0
|
30.7
|
1.0
|
|
NE2
|
C:HIS98
|
2.0
|
33.6
|
1.0
|
|
NE2
|
C:HIS197
|
2.0
|
31.2
|
1.0
|
|
CE1
|
C:HIS197
|
3.0
|
32.2
|
1.0
|
|
C4B
|
C:HEM502
|
3.0
|
30.6
|
1.0
|
|
C1C
|
C:HEM502
|
3.0
|
27.3
|
1.0
|
|
C4C
|
C:HEM502
|
3.0
|
28.1
|
1.0
|
|
CE1
|
C:HIS98
|
3.0
|
36.1
|
1.0
|
|
C1D
|
C:HEM502
|
3.0
|
32.9
|
1.0
|
|
CD2
|
C:HIS197
|
3.0
|
33.2
|
1.0
|
|
CD2
|
C:HIS98
|
3.0
|
34.8
|
1.0
|
|
C4D
|
C:HEM502
|
3.0
|
33.1
|
1.0
|
|
C4A
|
C:HEM502
|
3.0
|
31.4
|
1.0
|
|
C1A
|
C:HEM502
|
3.0
|
30.8
|
1.0
|
|
C1B
|
C:HEM502
|
3.0
|
30.2
|
1.0
|
|
CHC
|
C:HEM502
|
3.3
|
29.2
|
1.0
|
|
CHD
|
C:HEM502
|
3.3
|
31.5
|
1.0
|
|
CHB
|
C:HEM502
|
3.4
|
31.2
|
1.0
|
|
CHA
|
C:HEM502
|
3.4
|
32.4
|
1.0
|
|
ND1
|
C:HIS197
|
4.1
|
33.5
|
1.0
|
|
ND1
|
C:HIS98
|
4.1
|
37.5
|
1.0
|
|
CG
|
C:HIS197
|
4.1
|
34.8
|
1.0
|
|
CG
|
C:HIS98
|
4.1
|
35.7
|
1.0
|
|
C3C
|
C:HEM502
|
4.2
|
27.2
|
1.0
|
|
C2C
|
C:HEM502
|
4.2
|
26.7
|
1.0
|
|
C3B
|
C:HEM502
|
4.2
|
31.5
|
1.0
|
|
C2A
|
C:HEM502
|
4.3
|
31.4
|
1.0
|
|
C2D
|
C:HEM502
|
4.3
|
32.2
|
1.0
|
|
C3D
|
C:HEM502
|
4.3
|
33.0
|
1.0
|
|
C3A
|
C:HEM502
|
4.3
|
31.1
|
1.0
|
|
C2B
|
C:HEM502
|
4.3
|
30.2
|
1.0
|
|
Iron binding site 3 out
of 10 in 3l72
Go back to
Iron Binding Sites List in 3l72
Iron binding site 3 out
of 10 in the Chicken Cytochrome BC1 Complex with Kresoxym-I-Dimethyl Bound
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Chicken Cytochrome BC1 Complex with Kresoxym-I-Dimethyl Bound within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe501
b:42.4
occ:1.00
|
FE
|
D:HEC501
|
0.0
|
42.4
|
1.0
|
|
ND
|
D:HEC501
|
1.9
|
41.5
|
1.0
|
|
NC
|
D:HEC501
|
1.9
|
41.5
|
1.0
|
|
NA
|
D:HEC501
|
1.9
|
41.8
|
1.0
|
|
NB
|
D:HEC501
|
2.0
|
40.7
|
1.0
|
|
NE2
|
D:HIS41
|
2.0
|
43.6
|
1.0
|
|
SD
|
D:MET160
|
2.1
|
43.0
|
1.0
|
|
C1D
|
D:HEC501
|
2.9
|
41.5
|
1.0
|
|
C4C
|
D:HEC501
|
2.9
|
42.7
|
1.0
|
|
CD2
|
D:HIS41
|
2.9
|
45.4
|
1.0
|
|
C4D
|
D:HEC501
|
3.0
|
42.3
|
1.0
|
|
CE1
|
D:HIS41
|
3.0
|
45.7
|
1.0
|
|
C4A
|
D:HEC501
|
3.0
|
42.0
|
1.0
|
|
C1C
|
D:HEC501
|
3.0
|
42.4
|
1.0
|
|
C1B
|
D:HEC501
|
3.0
|
39.6
|
1.0
|
|
C1A
|
D:HEC501
|
3.0
|
42.1
|
1.0
|
|
C4B
|
D:HEC501
|
3.1
|
41.1
|
1.0
|
|
CHD
|
D:HEC501
|
3.2
|
42.1
|
1.0
|
|
CHB
|
D:HEC501
|
3.4
|
40.4
|
1.0
|
|
CHA
|
D:HEC501
|
3.4
|
42.0
|
1.0
|
|
CHC
|
D:HEC501
|
3.4
|
41.6
|
1.0
|
|
CE
|
D:MET160
|
3.4
|
40.8
|
1.0
|
|
CG
|
D:MET160
|
3.5
|
42.8
|
1.0
|
|
ND1
|
D:HIS41
|
4.1
|
46.1
|
1.0
|
|
CG
|
D:HIS41
|
4.1
|
45.9
|
1.0
|
|
C3C
|
D:HEC501
|
4.2
|
44.3
|
1.0
|
|
C2D
|
D:HEC501
|
4.2
|
42.4
|
1.0
|
|
C3D
|
D:HEC501
|
4.2
|
43.0
|
1.0
|
|
C2C
|
D:HEC501
|
4.2
|
43.5
|
1.0
|
|
C3A
|
D:HEC501
|
4.3
|
42.6
|
1.0
|
|
CB
|
D:MET160
|
4.3
|
42.9
|
1.0
|
|
C2B
|
D:HEC501
|
4.3
|
39.6
|
1.0
|
|
C2A
|
D:HEC501
|
4.3
|
42.3
|
1.0
|
|
C3B
|
D:HEC501
|
4.3
|
40.7
|
1.0
|
|
Iron binding site 4 out
of 10 in 3l72
Go back to
Iron Binding Sites List in 3l72
Iron binding site 4 out
of 10 in the Chicken Cytochrome BC1 Complex with Kresoxym-I-Dimethyl Bound
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Chicken Cytochrome BC1 Complex with Kresoxym-I-Dimethyl Bound within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe501
b:0.9
occ:0.88
|
FE1
|
E:FES501
|
0.0
|
0.9
|
0.9
|
|
S2
|
E:FES501
|
2.2
|
0.3
|
0.9
|
|
S1
|
E:FES501
|
2.2
|
0.4
|
0.9
|
|
SG
|
E:CYS158
|
2.3
|
1.0
|
0.9
|
|
SG
|
E:CYS139
|
2.3
|
0.3
|
0.9
|
|
FE2
|
E:FES501
|
2.7
|
0.2
|
0.9
|
|
CB
|
E:CYS139
|
3.1
|
0.7
|
0.9
|
|
CB
|
E:CYS158
|
3.1
|
0.7
|
0.9
|
|
CB
|
E:HIS141
|
3.9
|
0.0
|
0.9
|
|
CB
|
E:CYS144
|
4.0
|
0.7
|
0.9
|
|
OG
|
E:SER163
|
4.2
|
0.7
|
0.9
|
|
CB
|
E:CYS160
|
4.2
|
0.8
|
0.9
|
|
CB
|
E:SER163
|
4.2
|
0.6
|
0.9
|
|
ND1
|
E:HIS141
|
4.4
|
0.9
|
0.9
|
|
ND1
|
E:HIS161
|
4.4
|
0.8
|
0.9
|
|
CA
|
E:CYS139
|
4.5
|
0.2
|
0.9
|
|
CA
|
E:CYS158
|
4.5
|
1.0
|
0.9
|
|
O
|
E:CYS158
|
4.5
|
0.8
|
0.9
|
|
N
|
E:HIS161
|
4.6
|
0.5
|
0.9
|
|
CG
|
E:HIS141
|
4.7
|
0.4
|
0.9
|
|
CB
|
E:ALA176
|
4.7
|
0.4
|
0.9
|
|
N
|
E:LEU142
|
4.8
|
0.9
|
0.9
|
|
SG
|
E:CYS144
|
4.8
|
0.1
|
0.9
|
|
C
|
E:CYS158
|
4.9
|
0.3
|
0.9
|
|
N
|
E:CYS144
|
4.9
|
0.8
|
0.9
|
|
N
|
E:HIS141
|
4.9
|
0.9
|
0.9
|
|
Iron binding site 5 out
of 10 in 3l72
Go back to
Iron Binding Sites List in 3l72
Iron binding site 5 out
of 10 in the Chicken Cytochrome BC1 Complex with Kresoxym-I-Dimethyl Bound
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Chicken Cytochrome BC1 Complex with Kresoxym-I-Dimethyl Bound within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe501
b:0.2
occ:0.88
|
FE2
|
E:FES501
|
0.0
|
0.2
|
0.9
|
|
ND1
|
E:HIS161
|
2.1
|
0.8
|
0.9
|
|
ND1
|
E:HIS141
|
2.1
|
0.9
|
0.9
|
|
S1
|
E:FES501
|
2.2
|
0.4
|
0.9
|
|
S2
|
E:FES501
|
2.2
|
0.3
|
0.9
|
|
FE1
|
E:FES501
|
2.7
|
0.9
|
0.9
|
|
CG
|
E:HIS161
|
3.0
|
0.3
|
0.9
|
|
CG
|
E:HIS141
|
3.0
|
0.4
|
0.9
|
|
CE1
|
E:HIS161
|
3.1
|
0.8
|
0.9
|
|
CE1
|
E:HIS141
|
3.1
|
0.4
|
0.9
|
|
CB
|
E:HIS161
|
3.3
|
0.2
|
0.9
|
|
CB
|
E:HIS141
|
3.3
|
0.0
|
0.9
|
|
N
|
E:HIS161
|
3.8
|
0.5
|
0.9
|
|
CB
|
E:CYS160
|
4.1
|
0.8
|
0.9
|
|
CA
|
E:HIS161
|
4.1
|
0.9
|
0.9
|
|
CD2
|
E:HIS161
|
4.2
|
0.2
|
0.9
|
|
N
|
E:LEU142
|
4.2
|
0.9
|
0.9
|
|
CD2
|
E:HIS141
|
4.2
|
0.1
|
0.9
|
|
NE2
|
E:HIS161
|
4.2
|
1.0
|
0.9
|
|
NE2
|
E:HIS141
|
4.2
|
0.6
|
0.9
|
|
CG
|
E:PRO175
|
4.2
|
0.8
|
0.9
|
|
SG
|
E:CYS139
|
4.4
|
0.3
|
0.9
|
|
SG
|
E:CYS158
|
4.5
|
1.0
|
0.9
|
|
CB
|
E:LEU142
|
4.5
|
0.6
|
0.9
|
|
CG
|
E:LEU142
|
4.5
|
0.0
|
0.9
|
|
C
|
E:CYS160
|
4.5
|
0.1
|
0.9
|
|
CA
|
E:HIS141
|
4.6
|
0.4
|
0.9
|
|
C
|
E:HIS141
|
4.8
|
0.3
|
0.9
|
|
OG
|
E:SER163
|
4.8
|
0.7
|
0.9
|
|
C
|
E:HIS161
|
4.9
|
0.7
|
0.9
|
|
CA
|
E:CYS160
|
4.9
|
0.4
|
0.9
|
|
CA
|
E:LEU142
|
4.9
|
0.4
|
0.9
|
|
Iron binding site 6 out
of 10 in 3l72
Go back to
Iron Binding Sites List in 3l72
Iron binding site 6 out
of 10 in the Chicken Cytochrome BC1 Complex with Kresoxym-I-Dimethyl Bound
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Chicken Cytochrome BC1 Complex with Kresoxym-I-Dimethyl Bound within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
P:Fe501
b:46.7
occ:1.00
|
FE
|
P:HEM501
|
0.0
|
46.7
|
1.0
|
|
NC
|
P:HEM501
|
1.9
|
49.7
|
1.0
|
|
ND
|
P:HEM501
|
1.9
|
48.8
|
1.0
|
|
NB
|
P:HEM501
|
1.9
|
49.0
|
1.0
|
|
NA
|
P:HEM501
|
1.9
|
49.4
|
1.0
|
|
NE2
|
P:HIS84
|
2.0
|
48.1
|
1.0
|
|
NE2
|
P:HIS183
|
2.0
|
44.1
|
1.0
|
|
CE1
|
P:HIS84
|
2.9
|
48.9
|
1.0
|
|
CE1
|
P:HIS183
|
2.9
|
42.6
|
1.0
|
|
C4C
|
P:HEM501
|
3.0
|
50.2
|
1.0
|
|
C1C
|
P:HEM501
|
3.0
|
51.3
|
1.0
|
|
C4B
|
P:HEM501
|
3.0
|
50.4
|
1.0
|
|
C1D
|
P:HEM501
|
3.0
|
49.1
|
1.0
|
|
C1A
|
P:HEM501
|
3.0
|
49.9
|
1.0
|
|
C4A
|
P:HEM501
|
3.0
|
50.4
|
1.0
|
|
C4D
|
P:HEM501
|
3.0
|
49.4
|
1.0
|
|
C1B
|
P:HEM501
|
3.0
|
50.5
|
1.0
|
|
CD2
|
P:HIS183
|
3.1
|
42.1
|
1.0
|
|
CD2
|
P:HIS84
|
3.1
|
49.0
|
1.0
|
|
CHD
|
P:HEM501
|
3.3
|
49.5
|
1.0
|
|
CHC
|
P:HEM501
|
3.3
|
50.9
|
1.0
|
|
CHB
|
P:HEM501
|
3.4
|
51.6
|
1.0
|
|
CHA
|
P:HEM501
|
3.4
|
48.9
|
1.0
|
|
ND1
|
P:HIS84
|
4.1
|
49.8
|
1.0
|
|
ND1
|
P:HIS183
|
4.1
|
41.9
|
1.0
|
|
CG
|
P:HIS183
|
4.2
|
41.2
|
1.0
|
|
CG
|
P:HIS84
|
4.2
|
50.4
|
1.0
|
|
C3B
|
P:HEM501
|
4.2
|
51.1
|
1.0
|
|
C2A
|
P:HEM501
|
4.2
|
50.6
|
1.0
|
|
C3A
|
P:HEM501
|
4.2
|
50.0
|
1.0
|
|
C2C
|
P:HEM501
|
4.2
|
52.1
|
1.0
|
|
C3C
|
P:HEM501
|
4.2
|
51.4
|
1.0
|
|
C3D
|
P:HEM501
|
4.2
|
50.3
|
1.0
|
|
C2D
|
P:HEM501
|
4.3
|
50.1
|
1.0
|
|
C2B
|
P:HEM501
|
4.3
|
50.3
|
1.0
|
|
CA
|
P:GLY49
|
4.9
|
44.5
|
1.0
|
|
CA
|
P:GLY131
|
5.0
|
47.1
|
1.0
|
|
Iron binding site 7 out
of 10 in 3l72
Go back to
Iron Binding Sites List in 3l72
Iron binding site 7 out
of 10 in the Chicken Cytochrome BC1 Complex with Kresoxym-I-Dimethyl Bound
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Chicken Cytochrome BC1 Complex with Kresoxym-I-Dimethyl Bound within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
P:Fe502
b:46.1
occ:1.00
|
FE
|
P:HEM502
|
0.0
|
46.1
|
1.0
|
|
NC
|
P:HEM502
|
1.9
|
44.7
|
1.0
|
|
ND
|
P:HEM502
|
1.9
|
48.4
|
1.0
|
|
NB
|
P:HEM502
|
2.0
|
46.2
|
1.0
|
|
NA
|
P:HEM502
|
2.0
|
47.0
|
1.0
|
|
NE2
|
P:HIS197
|
2.0
|
47.1
|
1.0
|
|
NE2
|
P:HIS98
|
2.0
|
50.0
|
1.0
|
|
C1C
|
P:HEM502
|
2.9
|
45.0
|
1.0
|
|
C4C
|
P:HEM502
|
2.9
|
44.8
|
1.0
|
|
CE1
|
P:HIS197
|
3.0
|
47.0
|
1.0
|
|
C4B
|
P:HEM502
|
3.0
|
46.3
|
1.0
|
|
C1D
|
P:HEM502
|
3.0
|
49.2
|
1.0
|
|
CD2
|
P:HIS98
|
3.0
|
52.0
|
1.0
|
|
CD2
|
P:HIS197
|
3.0
|
47.8
|
1.0
|
|
CE1
|
P:HIS98
|
3.0
|
51.4
|
1.0
|
|
C4D
|
P:HEM502
|
3.0
|
49.5
|
1.0
|
|
C1B
|
P:HEM502
|
3.1
|
46.1
|
1.0
|
|
C4A
|
P:HEM502
|
3.1
|
46.4
|
1.0
|
|
C1A
|
P:HEM502
|
3.1
|
47.5
|
1.0
|
|
CHC
|
P:HEM502
|
3.3
|
45.4
|
1.0
|
|
CHD
|
P:HEM502
|
3.3
|
47.1
|
1.0
|
|
CHB
|
P:HEM502
|
3.4
|
46.1
|
1.0
|
|
CHA
|
P:HEM502
|
3.5
|
47.3
|
1.0
|
|
ND1
|
P:HIS197
|
4.1
|
47.2
|
1.0
|
|
ND1
|
P:HIS98
|
4.1
|
53.1
|
1.0
|
|
CG
|
P:HIS197
|
4.1
|
47.5
|
1.0
|
|
CG
|
P:HIS98
|
4.1
|
54.2
|
1.0
|
|
C2C
|
P:HEM502
|
4.2
|
45.0
|
1.0
|
|
C3C
|
P:HEM502
|
4.2
|
44.0
|
1.0
|
|
C3B
|
P:HEM502
|
4.2
|
47.0
|
1.0
|
|
C2D
|
P:HEM502
|
4.3
|
50.6
|
1.0
|
|
C3D
|
P:HEM502
|
4.3
|
51.9
|
1.0
|
|
C2A
|
P:HEM502
|
4.3
|
49.3
|
1.0
|
|
C3A
|
P:HEM502
|
4.3
|
47.3
|
1.0
|
|
C2B
|
P:HEM502
|
4.3
|
46.6
|
1.0
|
|
O
|
P:HOH384
|
4.9
|
44.8
|
1.0
|
|
Iron binding site 8 out
of 10 in 3l72
Go back to
Iron Binding Sites List in 3l72
Iron binding site 8 out
of 10 in the Chicken Cytochrome BC1 Complex with Kresoxym-I-Dimethyl Bound
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Chicken Cytochrome BC1 Complex with Kresoxym-I-Dimethyl Bound within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
Q:Fe501
b:74.6
occ:1.00
|
FE
|
Q:HEC501
|
0.0
|
74.6
|
1.0
|
|
NC
|
Q:HEC501
|
1.9
|
73.2
|
1.0
|
|
NB
|
Q:HEC501
|
2.0
|
70.8
|
1.0
|
|
ND
|
Q:HEC501
|
2.0
|
72.4
|
1.0
|
|
NE2
|
Q:HIS41
|
2.0
|
75.1
|
1.0
|
|
NA
|
Q:HEC501
|
2.0
|
72.1
|
1.0
|
|
SD
|
Q:MET160
|
2.1
|
78.0
|
1.0
|
|
C4C
|
Q:HEC501
|
2.9
|
73.8
|
1.0
|
|
CD2
|
Q:HIS41
|
2.9
|
76.0
|
1.0
|
|
C1C
|
Q:HEC501
|
3.0
|
72.6
|
1.0
|
|
C1D
|
Q:HEC501
|
3.0
|
71.8
|
1.0
|
|
C1B
|
Q:HEC501
|
3.0
|
69.1
|
1.0
|
|
CE1
|
Q:HIS41
|
3.0
|
76.0
|
1.0
|
|
C4A
|
Q:HEC501
|
3.0
|
70.5
|
1.0
|
|
C4B
|
Q:HEC501
|
3.0
|
70.1
|
1.0
|
|
C4D
|
Q:HEC501
|
3.1
|
71.8
|
1.0
|
|
C1A
|
Q:HEC501
|
3.1
|
70.7
|
1.0
|
|
CHD
|
Q:HEC501
|
3.3
|
72.6
|
1.0
|
|
CHB
|
Q:HEC501
|
3.4
|
69.1
|
1.0
|
|
CHC
|
Q:HEC501
|
3.4
|
71.1
|
1.0
|
|
CE
|
Q:MET160
|
3.4
|
78.9
|
1.0
|
|
CHA
|
Q:HEC501
|
3.5
|
71.4
|
1.0
|
|
CG
|
Q:MET160
|
3.5
|
82.6
|
1.0
|
|
CG
|
Q:HIS41
|
4.1
|
76.5
|
1.0
|
|
ND1
|
Q:HIS41
|
4.1
|
76.2
|
1.0
|
|
C3C
|
Q:HEC501
|
4.1
|
74.8
|
1.0
|
|
C2C
|
Q:HEC501
|
4.2
|
73.4
|
1.0
|
|
C2B
|
Q:HEC501
|
4.2
|
68.9
|
1.0
|
|
C2D
|
Q:HEC501
|
4.2
|
72.2
|
1.0
|
|
C3B
|
Q:HEC501
|
4.2
|
69.7
|
1.0
|
|
CB
|
Q:MET160
|
4.3
|
88.0
|
1.0
|
|
C3A
|
Q:HEC501
|
4.3
|
70.3
|
1.0
|
|
C3D
|
Q:HEC501
|
4.3
|
72.6
|
1.0
|
|
C2A
|
Q:HEC501
|
4.3
|
69.6
|
1.0
|
|
Iron binding site 9 out
of 10 in 3l72
Go back to
Iron Binding Sites List in 3l72
Iron binding site 9 out
of 10 in the Chicken Cytochrome BC1 Complex with Kresoxym-I-Dimethyl Bound
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Chicken Cytochrome BC1 Complex with Kresoxym-I-Dimethyl Bound within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
R:Fe501
b:91.5
occ:0.95
|
FE1
|
R:FES501
|
0.0
|
91.5
|
0.9
|
|
S1
|
R:FES501
|
2.2
|
90.5
|
0.9
|
|
S2
|
R:FES501
|
2.2
|
91.3
|
0.9
|
|
SG
|
R:CYS158
|
2.3
|
95.2
|
0.9
|
|
SG
|
R:CYS139
|
2.3
|
87.8
|
0.9
|
|
FE2
|
R:FES501
|
2.7
|
88.1
|
0.9
|
|
CB
|
R:CYS139
|
3.0
|
86.2
|
0.9
|
|
CB
|
R:CYS158
|
3.1
|
97.0
|
0.9
|
|
CB
|
R:HIS141
|
3.8
|
87.6
|
0.9
|
|
CB
|
R:CYS160
|
4.2
|
90.2
|
0.9
|
|
OG
|
R:SER163
|
4.2
|
96.0
|
0.9
|
|
CB
|
R:SER163
|
4.3
|
97.4
|
0.9
|
|
CB
|
R:CYS144
|
4.3
|
89.3
|
0.9
|
|
ND1
|
R:HIS141
|
4.4
|
88.3
|
0.9
|
|
ND1
|
R:HIS161
|
4.4
|
89.5
|
0.9
|
|
CA
|
R:CYS139
|
4.5
|
87.3
|
0.9
|
|
N
|
R:HIS161
|
4.5
|
91.1
|
0.9
|
|
O
|
R:CYS158
|
4.5
|
96.9
|
0.9
|
|
CA
|
R:CYS158
|
4.5
|
98.2
|
0.9
|
|
CG
|
R:HIS141
|
4.6
|
87.5
|
0.9
|
|
N
|
R:LEU142
|
4.7
|
86.3
|
0.9
|
|
N
|
R:HIS141
|
4.8
|
88.9
|
0.9
|
|
C
|
R:CYS158
|
4.9
|
97.0
|
0.9
|
|
CA
|
R:HIS141
|
4.9
|
88.0
|
0.9
|
|
N
|
R:CYS144
|
4.9
|
89.6
|
0.9
|
|
C
|
R:CYS139
|
4.9
|
87.8
|
0.9
|
|
Iron binding site 10 out
of 10 in 3l72
Go back to
Iron Binding Sites List in 3l72
Iron binding site 10 out
of 10 in the Chicken Cytochrome BC1 Complex with Kresoxym-I-Dimethyl Bound
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Chicken Cytochrome BC1 Complex with Kresoxym-I-Dimethyl Bound within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
R:Fe501
b:88.1
occ:0.95
|
FE2
|
R:FES501
|
0.0
|
88.1
|
0.9
|
|
ND1
|
R:HIS161
|
2.1
|
89.5
|
0.9
|
|
ND1
|
R:HIS141
|
2.1
|
88.3
|
0.9
|
|
S2
|
R:FES501
|
2.2
|
91.3
|
0.9
|
|
S1
|
R:FES501
|
2.2
|
90.5
|
0.9
|
|
FE1
|
R:FES501
|
2.7
|
91.5
|
0.9
|
|
CG
|
R:HIS161
|
3.0
|
89.8
|
0.9
|
|
CG
|
R:HIS141
|
3.0
|
87.5
|
0.9
|
|
CE1
|
R:HIS161
|
3.1
|
90.0
|
0.9
|
|
CE1
|
R:HIS141
|
3.2
|
87.9
|
0.9
|
|
CB
|
R:HIS141
|
3.2
|
87.6
|
0.9
|
|
CB
|
R:HIS161
|
3.3
|
90.6
|
0.9
|
|
N
|
R:HIS161
|
3.8
|
91.1
|
0.9
|
|
CB
|
R:CYS160
|
4.1
|
90.2
|
0.9
|
|
CA
|
R:HIS161
|
4.1
|
91.7
|
0.9
|
|
CD2
|
R:HIS161
|
4.1
|
90.4
|
0.9
|
|
N
|
R:LEU142
|
4.2
|
86.3
|
0.9
|
|
NE2
|
R:HIS161
|
4.2
|
90.8
|
0.9
|
|
CD2
|
R:HIS141
|
4.2
|
87.7
|
0.9
|
|
NE2
|
R:HIS141
|
4.2
|
87.5
|
0.9
|
|
SG
|
R:CYS158
|
4.5
|
95.2
|
0.9
|
|
SG
|
R:CYS139
|
4.5
|
87.8
|
0.9
|
|
C
|
R:CYS160
|
4.5
|
91.0
|
0.9
|
|
CG
|
R:PRO175
|
4.5
|
0.1
|
1.0
|
|
CA
|
R:HIS141
|
4.6
|
88.0
|
0.9
|
|
CB
|
R:LEU142
|
4.6
|
83.0
|
0.9
|
|
C
|
R:HIS141
|
4.8
|
87.5
|
0.9
|
|
OG
|
R:SER163
|
4.8
|
96.0
|
0.9
|
|
C
|
R:HIS161
|
4.9
|
92.9
|
0.9
|
|
CG
|
R:LEU142
|
4.9
|
80.1
|
0.9
|
|
CA
|
R:CYS160
|
4.9
|
91.4
|
0.9
|
|
CA
|
R:LEU142
|
4.9
|
84.8
|
0.9
|
|
Reference:
L.Huang,
E.A.Berry.
Famoxadone and Related Inhibitors Bind Like Methoxy Acrylate Inhibitors in the Qo Site of the BC1 Compl and Fix the Rieske Iron-Sulfur Protein in A Positio Close to But Distinct From That Seen with Stigmatellin and Other "Distal" Qo Inhibitors. To Be Published.
Page generated: Sun Aug 4 14:08:21 2024
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