Atomistry » Iron » PDB 3kyx-3lhb » 3lb8
Atomistry »
  Iron »
    PDB 3kyx-3lhb »
      3lb8 »

Iron in PDB 3lb8: Crystal Structure of the Covalent Putidaredoxin Reductase- Putidaredoxin Complex

Protein crystallography data

The structure of Crystal Structure of the Covalent Putidaredoxin Reductase- Putidaredoxin Complex, PDB code: 3lb8 was solved by I.F.Sevrioukova, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.50 / 2.60
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 67.600, 103.400, 167.700, 90.00, 90.00, 90.00
R / Rfree (%) 24.4 / 27.2

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of the Covalent Putidaredoxin Reductase- Putidaredoxin Complex (pdb code 3lb8). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Crystal Structure of the Covalent Putidaredoxin Reductase- Putidaredoxin Complex, PDB code: 3lb8:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 3lb8

Go back to Iron Binding Sites List in 3lb8
Iron binding site 1 out of 4 in the Crystal Structure of the Covalent Putidaredoxin Reductase- Putidaredoxin Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of the Covalent Putidaredoxin Reductase- Putidaredoxin Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe107

b:70.0
occ:1.00
FE1 C:FES107 0.0 70.0 1.0
S2 C:FES107 2.2 70.0 1.0
S1 C:FES107 2.2 67.7 1.0
SG C:CYS45 2.3 65.5 1.0
SG C:CYS39 2.3 68.3 1.0
FE2 C:FES107 2.7 71.5 1.0
CB C:CYS39 3.0 67.9 1.0
N C:CYS45 3.4 68.8 1.0
CB C:CYS45 3.5 67.7 1.0
N C:ALA46 3.8 70.8 1.0
N C:CYS39 3.8 69.2 1.0
N C:SER44 3.9 67.8 1.0
CA C:CYS39 3.9 68.6 1.0
CA C:CYS45 3.9 69.0 1.0
N C:GLY41 4.2 65.6 1.0
N C:ALA43 4.3 64.4 1.0
C C:CYS45 4.3 69.6 1.0
SG C:CYS48 4.3 82.5 1.0
C C:SER44 4.4 68.8 1.0
N C:GLY40 4.4 68.0 1.0
C C:CYS39 4.4 68.7 1.0
OG1 C:THR47 4.5 74.0 1.0
CA C:ALA43 4.5 65.7 1.0
SG C:CYS86 4.6 82.5 1.0
N C:SER42 4.6 65.2 1.0
CA C:GLY41 4.7 65.9 1.0
N C:THR47 4.7 74.0 1.0
CA C:SER44 4.7 68.0 1.0
C C:ALA43 4.7 66.8 1.0
C C:GLY37 4.9 73.4 1.0
O C:GLY37 4.9 72.4 1.0
CA C:ALA46 4.9 72.0 1.0

Iron binding site 2 out of 4 in 3lb8

Go back to Iron Binding Sites List in 3lb8
Iron binding site 2 out of 4 in the Crystal Structure of the Covalent Putidaredoxin Reductase- Putidaredoxin Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of the Covalent Putidaredoxin Reductase- Putidaredoxin Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe107

b:71.5
occ:1.00
FE2 C:FES107 0.0 71.5 1.0
S2 C:FES107 2.3 70.0 1.0
S1 C:FES107 2.3 67.7 1.0
SG C:CYS86 2.3 82.5 1.0
SG C:CYS48 2.3 82.5 1.0
FE1 C:FES107 2.7 70.0 1.0
CB C:CYS48 2.8 80.3 1.0
CB C:CYS86 3.2 80.2 1.0
CA C:CYS48 4.0 80.2 1.0
N C:CYS48 4.0 78.7 1.0
CA C:GLY41 4.2 65.9 1.0
SG C:CYS45 4.4 65.5 1.0
SG C:CYS39 4.4 68.3 1.0
CA C:CYS86 4.5 79.7 1.0
N C:ALA43 4.5 64.4 1.0
N C:GLY41 4.5 65.6 1.0
N C:CYS86 4.6 78.1 1.0
CA C:ALA43 4.7 65.7 1.0
CB C:LEU84 4.7 73.6 1.0
N C:ALA46 4.7 70.8 1.0
CG C:MET24 4.8 79.6 1.0
CD2 C:LEU84 4.8 72.5 1.0
N C:THR47 4.8 74.0 1.0
C C:GLY41 4.9 66.4 1.0
CD1 C:LEU84 4.9 73.4 1.0
N C:SER42 5.0 65.2 1.0

Iron binding site 3 out of 4 in 3lb8

Go back to Iron Binding Sites List in 3lb8
Iron binding site 3 out of 4 in the Crystal Structure of the Covalent Putidaredoxin Reductase- Putidaredoxin Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure of the Covalent Putidaredoxin Reductase- Putidaredoxin Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe107

b:0.7
occ:1.00
FE1 D:FES107 0.0 0.7 1.0
S2 D:FES107 2.3 0.2 1.0
SG D:CYS45 2.3 0.1 1.0
S1 D:FES107 2.3 0.4 1.0
SG D:CYS39 2.3 0.4 1.0
FE2 D:FES107 2.7 0.7 1.0
N D:CYS45 2.9 0.3 1.0
CB D:CYS39 3.4 0.1 1.0
CB D:CYS45 3.4 0.3 1.0
N D:SER44 3.4 0.1 1.0
CA D:CYS45 3.5 0.3 1.0
C D:SER44 3.9 0.7 1.0
CA D:ALA43 3.9 0.6 1.0
N D:ALA46 3.9 0.6 1.0
N D:ALA43 4.1 0.1 1.0
SG D:CYS48 4.2 0.8 1.0
C D:ALA43 4.2 0.6 1.0
C D:CYS45 4.2 0.5 1.0
CA D:SER44 4.3 0.2 1.0
N D:CYS39 4.3 0.6 1.0
CA D:CYS39 4.4 0.2 1.0
SG D:CYS86 4.6 0.5 1.0
N D:GLY41 4.6 0.3 1.0
OG1 D:THR47 4.8 0.1 1.0
C D:CYS39 4.8 0.1 1.0
CA D:GLY41 4.8 0.9 1.0
N D:THR47 4.9 0.5 1.0
O D:SER44 5.0 0.0 1.0

Iron binding site 4 out of 4 in 3lb8

Go back to Iron Binding Sites List in 3lb8
Iron binding site 4 out of 4 in the Crystal Structure of the Covalent Putidaredoxin Reductase- Putidaredoxin Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure of the Covalent Putidaredoxin Reductase- Putidaredoxin Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe107

b:0.7
occ:1.00
FE2 D:FES107 0.0 0.7 1.0
S2 D:FES107 2.2 0.2 1.0
S1 D:FES107 2.2 0.4 1.0
SG D:CYS48 2.3 0.8 1.0
SG D:CYS86 2.3 0.5 1.0
FE1 D:FES107 2.7 0.7 1.0
CB D:CYS48 3.5 0.5 1.0
CB D:CYS86 3.5 0.0 1.0
CA D:GLY41 3.6 0.9 1.0
SD D:MET24 3.9 0.3 1.0
SG D:CYS39 3.9 0.4 1.0
N D:GLY41 3.9 0.3 1.0
SG D:CYS45 4.0 0.1 1.0
CG D:MET24 4.2 0.7 1.0
C D:GLY41 4.3 0.5 1.0
CA D:GLY37 4.5 0.5 1.0
O D:GLY41 4.5 0.2 1.0
CA D:CYS48 4.7 0.6 1.0
N D:CYS48 4.7 0.9 1.0
N D:ALA43 4.8 0.1 1.0
CA D:CYS86 4.8 0.7 1.0
N D:CYS86 4.8 0.3 1.0
CA D:ALA43 4.8 0.6 1.0
C D:GLY40 4.9 0.6 1.0
CB D:MET24 4.9 0.5 1.0

Reference:

I.F.Sevrioukova, T.L.Poulos, I.Y.Churbanova. Crystal Structure of the Putidaredoxin Reductase X Putidaredoxin Electron Transfer Complex. J.Biol.Chem. V. 285 13616 2010.
ISSN: ISSN 0021-9258
PubMed: 20179327
DOI: 10.1074/JBC.M110.104968
Page generated: Sun Dec 13 15:11:13 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy