Iron in PDB 3lg1: Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase Reduced By Sodium Borohydride (in Complex with Sulfite)
Protein crystallography data
The structure of Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase Reduced By Sodium Borohydride (in Complex with Sulfite), PDB code: 3lg1
was solved by
A.A.Trofimov,
K.M.Polyakov,
K.M.Boyko,
A.A.Filimonenkov,
P.V.Dorovatovsky,
T.V.Tikhonova,
V.O.Popov,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
19.90 /
1.95
|
Space group
|
P 21 3
|
Cell size a, b, c (Å), α, β, γ (°)
|
192.620,
192.620,
192.620,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
16.1 /
18.3
|
Other elements in 3lg1:
The structure of Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase Reduced By Sodium Borohydride (in Complex with Sulfite) also contains other interesting chemical elements:
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
16;
Binding sites:
The binding sites of Iron atom in the Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase Reduced By Sodium Borohydride (in Complex with Sulfite)
(pdb code 3lg1). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 16 binding sites of Iron where determined in the
Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase Reduced By Sodium Borohydride (in Complex with Sulfite), PDB code: 3lg1:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 16 in 3lg1
Go back to
Iron Binding Sites List in 3lg1
Iron binding site 1 out
of 16 in the Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase Reduced By Sodium Borohydride (in Complex with Sulfite)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase Reduced By Sodium Borohydride (in Complex with Sulfite) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1004
b:15.8
occ:1.00
|
FE
|
A:HEC1004
|
0.0
|
15.8
|
1.0
|
NZ
|
A:LYS188
|
1.9
|
18.6
|
1.0
|
NB
|
A:HEC1004
|
2.0
|
15.2
|
1.0
|
NA
|
A:HEC1004
|
2.0
|
14.5
|
1.0
|
NC
|
A:HEC1004
|
2.0
|
16.0
|
1.0
|
ND
|
A:HEC1004
|
2.0
|
14.2
|
1.0
|
O
|
A:HOH940
|
2.1
|
14.3
|
0.5
|
S
|
A:SO3526
|
2.2
|
16.7
|
0.5
|
C4B
|
A:HEC1004
|
3.0
|
16.1
|
1.0
|
C1A
|
A:HEC1004
|
3.0
|
13.5
|
1.0
|
C1C
|
A:HEC1004
|
3.0
|
15.9
|
1.0
|
O2
|
A:SO3526
|
3.0
|
16.6
|
0.5
|
C4D
|
A:HEC1004
|
3.0
|
15.0
|
1.0
|
C1B
|
A:HEC1004
|
3.0
|
17.1
|
1.0
|
C4A
|
A:HEC1004
|
3.1
|
16.0
|
1.0
|
C1D
|
A:HEC1004
|
3.1
|
15.4
|
1.0
|
CE
|
A:LYS188
|
3.1
|
18.9
|
1.0
|
O1
|
A:SO3526
|
3.1
|
18.6
|
0.5
|
C4C
|
A:HEC1004
|
3.1
|
16.1
|
1.0
|
O3
|
A:SO3526
|
3.2
|
14.0
|
0.5
|
CHC
|
A:HEC1004
|
3.3
|
14.6
|
1.0
|
CHA
|
A:HEC1004
|
3.4
|
13.4
|
1.0
|
CHB
|
A:HEC1004
|
3.4
|
16.8
|
1.0
|
CHD
|
A:HEC1004
|
3.5
|
15.7
|
1.0
|
C2A
|
A:HEC1004
|
4.2
|
14.4
|
1.0
|
C3A
|
A:HEC1004
|
4.2
|
14.8
|
1.0
|
C2B
|
A:HEC1004
|
4.3
|
15.5
|
1.0
|
C3B
|
A:HEC1004
|
4.3
|
16.4
|
1.0
|
C2C
|
A:HEC1004
|
4.3
|
16.4
|
1.0
|
C3D
|
A:HEC1004
|
4.3
|
13.2
|
1.0
|
C2D
|
A:HEC1004
|
4.3
|
15.5
|
1.0
|
C3C
|
A:HEC1004
|
4.3
|
14.8
|
1.0
|
NE2
|
A:HIS361
|
4.4
|
18.2
|
1.0
|
CD
|
A:LYS188
|
4.5
|
15.6
|
1.0
|
O
|
A:HOH699
|
4.5
|
17.4
|
1.0
|
CMD
|
A:HEC1006
|
4.9
|
12.0
|
1.0
|
NH2
|
A:ARG131
|
4.9
|
14.8
|
1.0
|
|
Iron binding site 2 out
of 16 in 3lg1
Go back to
Iron Binding Sites List in 3lg1
Iron binding site 2 out
of 16 in the Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase Reduced By Sodium Borohydride (in Complex with Sulfite)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase Reduced By Sodium Borohydride (in Complex with Sulfite) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1005
b:15.6
occ:1.00
|
FE
|
A:HEC1005
|
0.0
|
15.6
|
1.0
|
NE2
|
A:HIS231
|
2.0
|
15.0
|
1.0
|
NE2
|
A:HIS398
|
2.0
|
14.0
|
1.0
|
NC
|
A:HEC1005
|
2.0
|
13.0
|
1.0
|
NA
|
A:HEC1005
|
2.0
|
13.0
|
1.0
|
NB
|
A:HEC1005
|
2.0
|
13.9
|
1.0
|
ND
|
A:HEC1005
|
2.0
|
14.2
|
1.0
|
CD2
|
A:HIS231
|
2.9
|
13.9
|
1.0
|
CD2
|
A:HIS398
|
3.0
|
13.3
|
1.0
|
CE1
|
A:HIS231
|
3.0
|
16.4
|
1.0
|
CE1
|
A:HIS398
|
3.0
|
15.5
|
1.0
|
C4C
|
A:HEC1005
|
3.0
|
12.9
|
1.0
|
C1A
|
A:HEC1005
|
3.0
|
15.0
|
1.0
|
C1D
|
A:HEC1005
|
3.0
|
15.3
|
1.0
|
C1C
|
A:HEC1005
|
3.0
|
13.4
|
1.0
|
C1B
|
A:HEC1005
|
3.0
|
14.2
|
1.0
|
C4B
|
A:HEC1005
|
3.0
|
13.6
|
1.0
|
C4A
|
A:HEC1005
|
3.0
|
15.4
|
1.0
|
C4D
|
A:HEC1005
|
3.1
|
14.4
|
1.0
|
CHD
|
A:HEC1005
|
3.4
|
12.8
|
1.0
|
CHC
|
A:HEC1005
|
3.4
|
13.0
|
1.0
|
CHA
|
A:HEC1005
|
3.4
|
13.4
|
1.0
|
CHB
|
A:HEC1005
|
3.4
|
14.3
|
1.0
|
ND1
|
A:HIS231
|
4.1
|
16.6
|
1.0
|
ND1
|
A:HIS398
|
4.1
|
15.5
|
1.0
|
CG
|
A:HIS231
|
4.1
|
14.4
|
1.0
|
CG
|
A:HIS398
|
4.1
|
15.5
|
1.0
|
C2A
|
A:HEC1005
|
4.2
|
14.3
|
1.0
|
C2B
|
A:HEC1005
|
4.2
|
15.1
|
1.0
|
C3A
|
A:HEC1005
|
4.2
|
13.3
|
1.0
|
C2C
|
A:HEC1005
|
4.3
|
12.9
|
1.0
|
C3D
|
A:HEC1005
|
4.3
|
13.3
|
1.0
|
C3B
|
A:HEC1005
|
4.3
|
14.2
|
1.0
|
C2D
|
A:HEC1005
|
4.3
|
13.9
|
1.0
|
C3C
|
A:HEC1005
|
4.3
|
12.1
|
1.0
|
CE
|
A:MET384
|
4.8
|
13.5
|
1.0
|
|
Iron binding site 3 out
of 16 in 3lg1
Go back to
Iron Binding Sites List in 3lg1
Iron binding site 3 out
of 16 in the Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase Reduced By Sodium Borohydride (in Complex with Sulfite)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase Reduced By Sodium Borohydride (in Complex with Sulfite) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1006
b:13.9
occ:1.00
|
FE
|
A:HEC1006
|
0.0
|
13.9
|
1.0
|
NE2
|
A:HIS119
|
1.9
|
14.3
|
1.0
|
NE2
|
A:HIS300
|
1.9
|
13.8
|
1.0
|
NB
|
A:HEC1006
|
2.0
|
13.9
|
1.0
|
ND
|
A:HEC1006
|
2.0
|
12.7
|
1.0
|
NA
|
A:HEC1006
|
2.0
|
14.0
|
1.0
|
NC
|
A:HEC1006
|
2.1
|
15.2
|
1.0
|
CE1
|
A:HIS119
|
2.9
|
14.7
|
1.0
|
CE1
|
A:HIS300
|
2.9
|
14.4
|
1.0
|
CD2
|
A:HIS300
|
3.0
|
14.1
|
1.0
|
CD2
|
A:HIS119
|
3.0
|
13.1
|
1.0
|
C1B
|
A:HEC1006
|
3.0
|
15.5
|
1.0
|
C1D
|
A:HEC1006
|
3.0
|
13.7
|
1.0
|
C4D
|
A:HEC1006
|
3.0
|
15.5
|
1.0
|
C4A
|
A:HEC1006
|
3.0
|
14.2
|
1.0
|
C1A
|
A:HEC1006
|
3.0
|
14.0
|
1.0
|
C4B
|
A:HEC1006
|
3.1
|
14.1
|
1.0
|
C1C
|
A:HEC1006
|
3.1
|
14.3
|
1.0
|
C4C
|
A:HEC1006
|
3.1
|
15.8
|
1.0
|
CHD
|
A:HEC1006
|
3.4
|
13.9
|
1.0
|
CHA
|
A:HEC1006
|
3.4
|
12.0
|
1.0
|
CHB
|
A:HEC1006
|
3.4
|
14.3
|
1.0
|
CHC
|
A:HEC1006
|
3.4
|
12.7
|
1.0
|
ND1
|
A:HIS119
|
4.0
|
12.8
|
1.0
|
ND1
|
A:HIS300
|
4.0
|
13.2
|
1.0
|
CG
|
A:HIS300
|
4.1
|
15.1
|
1.0
|
CG
|
A:HIS119
|
4.1
|
13.1
|
1.0
|
C2B
|
A:HEC1006
|
4.2
|
16.0
|
1.0
|
C3B
|
A:HEC1006
|
4.3
|
13.6
|
1.0
|
C2A
|
A:HEC1006
|
4.3
|
12.6
|
1.0
|
C3A
|
A:HEC1006
|
4.3
|
11.9
|
1.0
|
C2D
|
A:HEC1006
|
4.3
|
13.4
|
1.0
|
C3D
|
A:HEC1006
|
4.3
|
13.9
|
1.0
|
C2C
|
A:HEC1006
|
4.3
|
13.9
|
1.0
|
C3C
|
A:HEC1006
|
4.4
|
13.8
|
1.0
|
|
Iron binding site 4 out
of 16 in 3lg1
Go back to
Iron Binding Sites List in 3lg1
Iron binding site 4 out
of 16 in the Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase Reduced By Sodium Borohydride (in Complex with Sulfite)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase Reduced By Sodium Borohydride (in Complex with Sulfite) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1007
b:14.4
occ:1.00
|
FE
|
A:HEC1007
|
0.0
|
14.4
|
1.0
|
NE2
|
A:HIS383
|
1.9
|
15.4
|
1.0
|
NE2
|
A:HIS491
|
1.9
|
11.4
|
1.0
|
NC
|
A:HEC1007
|
2.0
|
13.8
|
1.0
|
NA
|
A:HEC1007
|
2.0
|
12.8
|
1.0
|
NB
|
A:HEC1007
|
2.0
|
13.6
|
1.0
|
ND
|
A:HEC1007
|
2.1
|
14.5
|
1.0
|
CE1
|
A:HIS491
|
2.8
|
12.9
|
1.0
|
CE1
|
A:HIS383
|
2.9
|
14.4
|
1.0
|
CD2
|
A:HIS383
|
2.9
|
15.6
|
1.0
|
C1C
|
A:HEC1007
|
3.0
|
15.0
|
1.0
|
C4A
|
A:HEC1007
|
3.0
|
13.8
|
1.0
|
C4B
|
A:HEC1007
|
3.0
|
12.9
|
1.0
|
C1B
|
A:HEC1007
|
3.0
|
14.6
|
1.0
|
CD2
|
A:HIS491
|
3.0
|
12.3
|
1.0
|
C1A
|
A:HEC1007
|
3.0
|
13.9
|
1.0
|
C4C
|
A:HEC1007
|
3.1
|
14.5
|
1.0
|
C4D
|
A:HEC1007
|
3.1
|
14.7
|
1.0
|
C1D
|
A:HEC1007
|
3.1
|
15.1
|
1.0
|
CHC
|
A:HEC1007
|
3.4
|
15.1
|
1.0
|
CHB
|
A:HEC1007
|
3.4
|
14.9
|
1.0
|
CHA
|
A:HEC1007
|
3.4
|
11.7
|
1.0
|
CHD
|
A:HEC1007
|
3.5
|
14.8
|
1.0
|
ND1
|
A:HIS491
|
4.0
|
13.1
|
1.0
|
ND1
|
A:HIS383
|
4.0
|
14.3
|
1.0
|
CG
|
A:HIS383
|
4.1
|
15.3
|
1.0
|
CG
|
A:HIS491
|
4.1
|
13.7
|
1.0
|
C3A
|
A:HEC1007
|
4.2
|
13.5
|
1.0
|
C2C
|
A:HEC1007
|
4.2
|
14.5
|
1.0
|
C2A
|
A:HEC1007
|
4.2
|
13.9
|
1.0
|
C2B
|
A:HEC1007
|
4.2
|
15.7
|
1.0
|
C3B
|
A:HEC1007
|
4.3
|
14.4
|
1.0
|
C3C
|
A:HEC1007
|
4.3
|
13.9
|
1.0
|
C3D
|
A:HEC1007
|
4.3
|
13.9
|
1.0
|
C2D
|
A:HEC1007
|
4.3
|
13.5
|
1.0
|
|
Iron binding site 5 out
of 16 in 3lg1
Go back to
Iron Binding Sites List in 3lg1
Iron binding site 5 out
of 16 in the Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase Reduced By Sodium Borohydride (in Complex with Sulfite)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase Reduced By Sodium Borohydride (in Complex with Sulfite) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1008
b:17.6
occ:1.00
|
FE
|
A:HEC1008
|
0.0
|
17.6
|
1.0
|
NE2
|
A:HIS415
|
1.9
|
18.6
|
1.0
|
NE2
|
A:HIS372
|
1.9
|
15.4
|
1.0
|
NB
|
A:HEC1008
|
2.0
|
17.0
|
1.0
|
NC
|
A:HEC1008
|
2.0
|
18.4
|
1.0
|
ND
|
A:HEC1008
|
2.1
|
21.7
|
1.0
|
NA
|
A:HEC1008
|
2.1
|
18.2
|
1.0
|
CE1
|
A:HIS415
|
2.8
|
23.1
|
1.0
|
CD2
|
A:HIS372
|
2.9
|
15.7
|
1.0
|
CE1
|
A:HIS372
|
2.9
|
16.9
|
1.0
|
CD2
|
A:HIS415
|
3.0
|
18.0
|
1.0
|
C4B
|
A:HEC1008
|
3.0
|
17.5
|
1.0
|
C1C
|
A:HEC1008
|
3.0
|
19.3
|
1.0
|
C1B
|
A:HEC1008
|
3.0
|
17.8
|
1.0
|
C1D
|
A:HEC1008
|
3.1
|
22.0
|
1.0
|
C4C
|
A:HEC1008
|
3.1
|
19.6
|
1.0
|
C4D
|
A:HEC1008
|
3.1
|
22.4
|
1.0
|
C1A
|
A:HEC1008
|
3.1
|
20.5
|
1.0
|
C4A
|
A:HEC1008
|
3.1
|
18.7
|
1.0
|
CHC
|
A:HEC1008
|
3.4
|
19.4
|
1.0
|
CHD
|
A:HEC1008
|
3.4
|
19.6
|
1.0
|
CHB
|
A:HEC1008
|
3.4
|
17.5
|
1.0
|
CHA
|
A:HEC1008
|
3.5
|
20.7
|
1.0
|
ND1
|
A:HIS415
|
4.0
|
22.3
|
1.0
|
ND1
|
A:HIS372
|
4.0
|
16.3
|
1.0
|
CG
|
A:HIS372
|
4.1
|
16.2
|
1.0
|
CG
|
A:HIS415
|
4.1
|
19.6
|
1.0
|
C2B
|
A:HEC1008
|
4.2
|
15.8
|
1.0
|
C3B
|
A:HEC1008
|
4.2
|
17.0
|
1.0
|
C2C
|
A:HEC1008
|
4.3
|
17.9
|
1.0
|
C3C
|
A:HEC1008
|
4.3
|
16.7
|
1.0
|
C3D
|
A:HEC1008
|
4.3
|
24.2
|
1.0
|
C2D
|
A:HEC1008
|
4.3
|
23.5
|
1.0
|
C2A
|
A:HEC1008
|
4.3
|
19.6
|
1.0
|
C3A
|
A:HEC1008
|
4.3
|
20.1
|
1.0
|
CBC
|
A:HEC1007
|
5.0
|
17.0
|
1.0
|
|
Iron binding site 6 out
of 16 in 3lg1
Go back to
Iron Binding Sites List in 3lg1
Iron binding site 6 out
of 16 in the Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase Reduced By Sodium Borohydride (in Complex with Sulfite)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase Reduced By Sodium Borohydride (in Complex with Sulfite) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1002
b:16.7
occ:1.00
|
FE
|
A:HEC1002
|
0.0
|
16.7
|
1.0
|
NE2
|
A:HIS234
|
1.9
|
12.2
|
1.0
|
NE2
|
A:HIS39
|
1.9
|
16.0
|
1.0
|
NB
|
A:HEC1002
|
2.0
|
17.3
|
1.0
|
NA
|
A:HEC1002
|
2.0
|
15.4
|
1.0
|
NC
|
A:HEC1002
|
2.0
|
17.8
|
1.0
|
ND
|
A:HEC1002
|
2.1
|
17.1
|
1.0
|
CE1
|
A:HIS234
|
2.8
|
11.4
|
1.0
|
CE1
|
A:HIS39
|
2.9
|
15.6
|
1.0
|
CD2
|
A:HIS39
|
2.9
|
15.8
|
1.0
|
CD2
|
A:HIS234
|
3.0
|
11.3
|
1.0
|
C1B
|
A:HEC1002
|
3.0
|
19.2
|
1.0
|
C4C
|
A:HEC1002
|
3.0
|
17.6
|
1.0
|
C4A
|
A:HEC1002
|
3.0
|
17.9
|
1.0
|
C1D
|
A:HEC1002
|
3.1
|
17.4
|
1.0
|
C1C
|
A:HEC1002
|
3.1
|
17.4
|
1.0
|
C1A
|
A:HEC1002
|
3.1
|
16.9
|
1.0
|
C4B
|
A:HEC1002
|
3.1
|
18.1
|
1.0
|
C4D
|
A:HEC1002
|
3.2
|
17.7
|
1.0
|
CHD
|
A:HEC1002
|
3.4
|
16.2
|
1.0
|
CHB
|
A:HEC1002
|
3.4
|
17.5
|
1.0
|
CHC
|
A:HEC1002
|
3.5
|
17.3
|
1.0
|
CHA
|
A:HEC1002
|
3.5
|
16.8
|
1.0
|
ND1
|
A:HIS234
|
4.0
|
11.4
|
1.0
|
ND1
|
A:HIS39
|
4.0
|
15.3
|
1.0
|
CG
|
A:HIS234
|
4.1
|
13.8
|
1.0
|
CG
|
A:HIS39
|
4.1
|
16.1
|
1.0
|
C2B
|
A:HEC1002
|
4.3
|
16.9
|
1.0
|
C2A
|
A:HEC1002
|
4.3
|
17.4
|
1.0
|
C3A
|
A:HEC1002
|
4.3
|
16.6
|
1.0
|
C2C
|
A:HEC1002
|
4.3
|
16.8
|
1.0
|
C3C
|
A:HEC1002
|
4.3
|
17.2
|
1.0
|
C3B
|
A:HEC1002
|
4.3
|
17.2
|
1.0
|
C2D
|
A:HEC1002
|
4.3
|
15.7
|
1.0
|
C3D
|
A:HEC1002
|
4.4
|
16.2
|
1.0
|
|
Iron binding site 7 out
of 16 in 3lg1
Go back to
Iron Binding Sites List in 3lg1
Iron binding site 7 out
of 16 in the Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase Reduced By Sodium Borohydride (in Complex with Sulfite)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase Reduced By Sodium Borohydride (in Complex with Sulfite) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1003
b:16.1
occ:1.00
|
FE
|
A:HEC1003
|
0.0
|
16.1
|
1.0
|
NE2
|
A:HIS70
|
1.9
|
16.4
|
1.0
|
NE2
|
A:HIS30
|
2.0
|
16.4
|
1.0
|
ND
|
A:HEC1003
|
2.0
|
14.0
|
1.0
|
NB
|
A:HEC1003
|
2.0
|
11.3
|
1.0
|
NA
|
A:HEC1003
|
2.0
|
15.3
|
1.0
|
NC
|
A:HEC1003
|
2.0
|
14.0
|
1.0
|
CE1
|
A:HIS30
|
2.9
|
19.9
|
1.0
|
CD2
|
A:HIS70
|
2.9
|
14.0
|
1.0
|
CE1
|
A:HIS70
|
3.0
|
17.4
|
1.0
|
C1B
|
A:HEC1003
|
3.0
|
14.0
|
1.0
|
C1D
|
A:HEC1003
|
3.0
|
14.4
|
1.0
|
C4A
|
A:HEC1003
|
3.0
|
14.2
|
1.0
|
CD2
|
A:HIS30
|
3.0
|
15.8
|
1.0
|
C4D
|
A:HEC1003
|
3.0
|
15.9
|
1.0
|
C4C
|
A:HEC1003
|
3.0
|
13.7
|
1.0
|
C1A
|
A:HEC1003
|
3.1
|
14.3
|
1.0
|
C4B
|
A:HEC1003
|
3.1
|
14.5
|
1.0
|
C1C
|
A:HEC1003
|
3.1
|
14.0
|
1.0
|
CHB
|
A:HEC1003
|
3.3
|
16.0
|
1.0
|
CHD
|
A:HEC1003
|
3.4
|
14.0
|
1.0
|
CHA
|
A:HEC1003
|
3.5
|
16.9
|
1.0
|
CHC
|
A:HEC1003
|
3.5
|
12.8
|
1.0
|
ND1
|
A:HIS30
|
4.0
|
18.8
|
1.0
|
ND1
|
A:HIS70
|
4.1
|
15.9
|
1.0
|
CG
|
A:HIS70
|
4.1
|
15.0
|
1.0
|
CG
|
A:HIS30
|
4.1
|
19.2
|
1.0
|
C2B
|
A:HEC1003
|
4.2
|
15.7
|
1.0
|
C3A
|
A:HEC1003
|
4.2
|
15.3
|
1.0
|
C2D
|
A:HEC1003
|
4.2
|
14.9
|
1.0
|
C3D
|
A:HEC1003
|
4.2
|
15.2
|
1.0
|
C2A
|
A:HEC1003
|
4.3
|
14.4
|
1.0
|
C3B
|
A:HEC1003
|
4.3
|
14.9
|
1.0
|
C3C
|
A:HEC1003
|
4.3
|
13.0
|
1.0
|
C2C
|
A:HEC1003
|
4.3
|
12.5
|
1.0
|
|
Iron binding site 8 out
of 16 in 3lg1
Go back to
Iron Binding Sites List in 3lg1
Iron binding site 8 out
of 16 in the Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase Reduced By Sodium Borohydride (in Complex with Sulfite)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase Reduced By Sodium Borohydride (in Complex with Sulfite) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1001
b:17.4
occ:1.00
|
FE
|
A:HEC1001
|
0.0
|
17.4
|
1.0
|
NE2
|
A:HIS18
|
1.9
|
14.2
|
1.0
|
NE2
|
A:HIS44
|
1.9
|
15.2
|
1.0
|
ND
|
A:HEC1001
|
2.0
|
19.7
|
1.0
|
NB
|
A:HEC1001
|
2.0
|
18.4
|
1.0
|
NA
|
A:HEC1001
|
2.1
|
17.8
|
1.0
|
NC
|
A:HEC1001
|
2.1
|
17.9
|
1.0
|
CE1
|
A:HIS18
|
2.8
|
15.1
|
1.0
|
CE1
|
A:HIS44
|
2.9
|
21.4
|
1.0
|
CD2
|
A:HIS44
|
2.9
|
18.8
|
1.0
|
CD2
|
A:HIS18
|
2.9
|
15.8
|
1.0
|
C1D
|
A:HEC1001
|
3.0
|
20.2
|
1.0
|
C1B
|
A:HEC1001
|
3.0
|
20.1
|
1.0
|
C4A
|
A:HEC1001
|
3.1
|
19.5
|
1.0
|
C4D
|
A:HEC1001
|
3.1
|
21.2
|
1.0
|
C4C
|
A:HEC1001
|
3.1
|
19.1
|
1.0
|
C1A
|
A:HEC1001
|
3.1
|
19.0
|
1.0
|
C4B
|
A:HEC1001
|
3.1
|
19.5
|
1.0
|
C1C
|
A:HEC1001
|
3.1
|
20.2
|
1.0
|
CHD
|
A:HEC1001
|
3.4
|
19.9
|
1.0
|
CHB
|
A:HEC1001
|
3.4
|
17.5
|
1.0
|
CHA
|
A:HEC1001
|
3.5
|
18.6
|
1.0
|
CHC
|
A:HEC1001
|
3.5
|
19.2
|
1.0
|
ND1
|
A:HIS18
|
4.0
|
14.5
|
1.0
|
ND1
|
A:HIS44
|
4.0
|
18.6
|
1.0
|
CG
|
A:HIS18
|
4.0
|
15.3
|
1.0
|
CG
|
A:HIS44
|
4.1
|
20.7
|
1.0
|
C2D
|
A:HEC1001
|
4.3
|
20.0
|
1.0
|
C2B
|
A:HEC1001
|
4.3
|
18.0
|
1.0
|
C3D
|
A:HEC1001
|
4.3
|
21.0
|
1.0
|
C3A
|
A:HEC1001
|
4.3
|
17.9
|
1.0
|
C2A
|
A:HEC1001
|
4.3
|
19.2
|
1.0
|
C3B
|
A:HEC1001
|
4.3
|
19.0
|
1.0
|
C2C
|
A:HEC1001
|
4.4
|
20.0
|
1.0
|
C3C
|
A:HEC1001
|
4.4
|
20.0
|
1.0
|
CMA
|
A:HEC1002
|
4.8
|
16.2
|
1.0
|
|
Iron binding site 9 out
of 16 in 3lg1
Go back to
Iron Binding Sites List in 3lg1
Iron binding site 9 out
of 16 in the Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase Reduced By Sodium Borohydride (in Complex with Sulfite)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase Reduced By Sodium Borohydride (in Complex with Sulfite) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe1004
b:16.1
occ:1.00
|
FE
|
B:HEC1004
|
0.0
|
16.1
|
1.0
|
NZ
|
B:LYS188
|
1.9
|
16.0
|
1.0
|
O
|
B:HOH955
|
2.0
|
19.6
|
0.5
|
NA
|
B:HEC1004
|
2.0
|
15.5
|
1.0
|
NC
|
B:HEC1004
|
2.0
|
14.5
|
1.0
|
NB
|
B:HEC1004
|
2.0
|
14.9
|
1.0
|
ND
|
B:HEC1004
|
2.0
|
15.2
|
1.0
|
S
|
B:SO3526
|
2.2
|
14.8
|
0.5
|
C1A
|
B:HEC1004
|
3.0
|
14.8
|
1.0
|
O2
|
B:SO3526
|
3.0
|
12.3
|
0.5
|
C1C
|
B:HEC1004
|
3.0
|
16.5
|
1.0
|
C4B
|
B:HEC1004
|
3.0
|
15.5
|
1.0
|
C4D
|
B:HEC1004
|
3.0
|
13.8
|
1.0
|
CE
|
B:LYS188
|
3.0
|
17.0
|
1.0
|
O1
|
B:SO3526
|
3.1
|
14.3
|
0.5
|
C4A
|
B:HEC1004
|
3.1
|
13.9
|
1.0
|
C1D
|
B:HEC1004
|
3.1
|
15.1
|
1.0
|
C4C
|
B:HEC1004
|
3.1
|
17.1
|
1.0
|
C1B
|
B:HEC1004
|
3.1
|
14.6
|
1.0
|
O3
|
B:SO3526
|
3.3
|
12.6
|
0.5
|
CHC
|
B:HEC1004
|
3.3
|
13.9
|
1.0
|
CHA
|
B:HEC1004
|
3.4
|
11.6
|
1.0
|
CHD
|
B:HEC1004
|
3.5
|
14.5
|
1.0
|
CHB
|
B:HEC1004
|
3.5
|
14.8
|
1.0
|
C2A
|
B:HEC1004
|
4.2
|
14.8
|
1.0
|
C3A
|
B:HEC1004
|
4.3
|
14.9
|
1.0
|
C2C
|
B:HEC1004
|
4.3
|
16.2
|
1.0
|
C3D
|
B:HEC1004
|
4.3
|
14.0
|
1.0
|
C3B
|
B:HEC1004
|
4.3
|
16.6
|
1.0
|
C2B
|
B:HEC1004
|
4.3
|
15.0
|
1.0
|
C3C
|
B:HEC1004
|
4.3
|
15.8
|
1.0
|
C2D
|
B:HEC1004
|
4.3
|
12.9
|
1.0
|
NE2
|
B:HIS361
|
4.3
|
16.6
|
1.0
|
CD
|
B:LYS188
|
4.5
|
17.9
|
1.0
|
O
|
B:HOH716
|
4.5
|
16.0
|
1.0
|
NH2
|
B:ARG131
|
4.9
|
15.4
|
1.0
|
CMD
|
B:HEC1006
|
4.9
|
13.2
|
1.0
|
|
Iron binding site 10 out
of 16 in 3lg1
Go back to
Iron Binding Sites List in 3lg1
Iron binding site 10 out
of 16 in the Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase Reduced By Sodium Borohydride (in Complex with Sulfite)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Structure of the Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase Reduced By Sodium Borohydride (in Complex with Sulfite) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe1005
b:15.4
occ:1.00
|
FE
|
B:HEC1005
|
0.0
|
15.4
|
1.0
|
NE2
|
B:HIS231
|
1.9
|
15.0
|
1.0
|
NE2
|
B:HIS398
|
2.0
|
14.2
|
1.0
|
NA
|
B:HEC1005
|
2.0
|
14.4
|
1.0
|
NC
|
B:HEC1005
|
2.0
|
14.8
|
1.0
|
NB
|
B:HEC1005
|
2.0
|
14.4
|
1.0
|
ND
|
B:HEC1005
|
2.0
|
15.7
|
1.0
|
CE1
|
B:HIS231
|
2.9
|
16.4
|
1.0
|
CD2
|
B:HIS398
|
3.0
|
12.3
|
1.0
|
CD2
|
B:HIS231
|
3.0
|
12.8
|
1.0
|
CE1
|
B:HIS398
|
3.0
|
14.7
|
1.0
|
C4A
|
B:HEC1005
|
3.0
|
14.4
|
1.0
|
C1A
|
B:HEC1005
|
3.0
|
14.3
|
1.0
|
C1C
|
B:HEC1005
|
3.0
|
14.7
|
1.0
|
C1B
|
B:HEC1005
|
3.0
|
13.4
|
1.0
|
C1D
|
B:HEC1005
|
3.0
|
15.0
|
1.0
|
C4D
|
B:HEC1005
|
3.0
|
15.3
|
1.0
|
C4B
|
B:HEC1005
|
3.0
|
15.1
|
1.0
|
C4C
|
B:HEC1005
|
3.1
|
12.6
|
1.0
|
CHB
|
B:HEC1005
|
3.4
|
12.3
|
1.0
|
CHD
|
B:HEC1005
|
3.4
|
13.7
|
1.0
|
CHC
|
B:HEC1005
|
3.4
|
15.6
|
1.0
|
CHA
|
B:HEC1005
|
3.4
|
14.0
|
1.0
|
ND1
|
B:HIS231
|
4.1
|
15.3
|
1.0
|
ND1
|
B:HIS398
|
4.1
|
13.8
|
1.0
|
CG
|
B:HIS231
|
4.1
|
15.2
|
1.0
|
CG
|
B:HIS398
|
4.1
|
15.8
|
1.0
|
C3A
|
B:HEC1005
|
4.2
|
15.2
|
1.0
|
C2A
|
B:HEC1005
|
4.2
|
14.2
|
1.0
|
C2B
|
B:HEC1005
|
4.2
|
14.4
|
1.0
|
C3D
|
B:HEC1005
|
4.3
|
14.7
|
1.0
|
C3B
|
B:HEC1005
|
4.3
|
13.7
|
1.0
|
C2C
|
B:HEC1005
|
4.3
|
12.4
|
1.0
|
C2D
|
B:HEC1005
|
4.3
|
14.3
|
1.0
|
C3C
|
B:HEC1005
|
4.3
|
12.3
|
1.0
|
CE
|
B:MET384
|
4.8
|
16.3
|
1.0
|
|
Reference:
A.A.Trofimov,
K.M.Polyakov,
T.V.Tikhonova,
A.V.Tikhonov,
T.N.Safonova,
K.M.Boyko,
P.V.Dorovatovskii,
V.O.Popov.
Covalent Modifications of the Catalytic Tyrosine in Octahaem Cytochrome C Nitrite Reductase and Their Effect on the Enzyme Activity. Acta Crystallogr.,Sect.D V. 68 144 2012.
ISSN: ISSN 0907-4449
PubMed: 22281743
DOI: 10.1107/S0907444911052632
Page generated: Sun Aug 4 14:20:58 2024
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