Iron in PDB 3lhb: The 2.7 Angstrom Crystal Structure of Deoxygenated Hemoglobin From the Sea Lamprey (Petromyzon Marinus)
Protein crystallography data
The structure of The 2.7 Angstrom Crystal Structure of Deoxygenated Hemoglobin From the Sea Lamprey (Petromyzon Marinus), PDB code: 3lhb
was solved by
H.A.Heaslet,
W.E.Royer Jr.,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
10.00 /
2.70
|
|
Space group
|
P 1 21 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
59.630,
215.160,
75.390,
90.00,
95.80,
90.00
|
|
R / Rfree (%)
|
19.5 /
23.2
|
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Iron atom in the The 2.7 Angstrom Crystal Structure of Deoxygenated Hemoglobin From the Sea Lamprey (Petromyzon Marinus)
(pdb code 3lhb). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the
The 2.7 Angstrom Crystal Structure of Deoxygenated Hemoglobin From the Sea Lamprey (Petromyzon Marinus), PDB code: 3lhb:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 12 in 3lhb
Go back to
Iron Binding Sites List in 3lhb
Iron binding site 1 out
of 12 in the The 2.7 Angstrom Crystal Structure of Deoxygenated Hemoglobin From the Sea Lamprey (Petromyzon Marinus)
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of The 2.7 Angstrom Crystal Structure of Deoxygenated Hemoglobin From the Sea Lamprey (Petromyzon Marinus) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe150
b:22.8
occ:1.00
|
FE
|
A:HEM150
|
0.0
|
22.8
|
1.0
|
|
ND
|
A:HEM150
|
1.9
|
22.8
|
1.0
|
|
NC
|
A:HEM150
|
2.0
|
22.8
|
1.0
|
|
NA
|
A:HEM150
|
2.0
|
22.8
|
1.0
|
|
NE2
|
A:HIS105
|
2.0
|
13.9
|
1.0
|
|
NB
|
A:HEM150
|
2.0
|
22.8
|
1.0
|
|
CE1
|
A:HIS105
|
3.0
|
13.9
|
1.0
|
|
C1D
|
A:HEM150
|
3.0
|
22.8
|
1.0
|
|
C4D
|
A:HEM150
|
3.0
|
22.8
|
1.0
|
|
C4C
|
A:HEM150
|
3.0
|
22.8
|
1.0
|
|
C1C
|
A:HEM150
|
3.0
|
22.8
|
1.0
|
|
C1A
|
A:HEM150
|
3.1
|
22.8
|
1.0
|
|
C4A
|
A:HEM150
|
3.1
|
22.8
|
1.0
|
|
C4B
|
A:HEM150
|
3.1
|
22.8
|
1.0
|
|
C1B
|
A:HEM150
|
3.1
|
22.8
|
1.0
|
|
CD2
|
A:HIS105
|
3.1
|
13.9
|
1.0
|
|
CHD
|
A:HEM150
|
3.4
|
22.8
|
1.0
|
|
CHA
|
A:HEM150
|
3.4
|
22.8
|
1.0
|
|
CHC
|
A:HEM150
|
3.4
|
22.8
|
1.0
|
|
CHB
|
A:HEM150
|
3.5
|
22.8
|
1.0
|
|
ND1
|
A:HIS105
|
4.1
|
13.9
|
1.0
|
|
NE2
|
A:HIS73
|
4.2
|
24.5
|
1.0
|
|
C3D
|
A:HEM150
|
4.2
|
22.8
|
1.0
|
|
C2D
|
A:HEM150
|
4.2
|
22.8
|
1.0
|
|
CG
|
A:HIS105
|
4.2
|
13.9
|
1.0
|
|
C3C
|
A:HEM150
|
4.3
|
22.8
|
1.0
|
|
C2C
|
A:HEM150
|
4.3
|
22.8
|
1.0
|
|
C2A
|
A:HEM150
|
4.3
|
22.8
|
1.0
|
|
C3A
|
A:HEM150
|
4.3
|
22.8
|
1.0
|
|
C3B
|
A:HEM150
|
4.4
|
22.8
|
1.0
|
|
C2B
|
A:HEM150
|
4.4
|
22.8
|
1.0
|
|
CD1
|
A:ILE77
|
4.6
|
9.7
|
1.0
|
|
CG1
|
A:ILE77
|
4.6
|
9.7
|
1.0
|
|
Iron binding site 2 out
of 12 in 3lhb
Go back to
Iron Binding Sites List in 3lhb
Iron binding site 2 out
of 12 in the The 2.7 Angstrom Crystal Structure of Deoxygenated Hemoglobin From the Sea Lamprey (Petromyzon Marinus)
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of The 2.7 Angstrom Crystal Structure of Deoxygenated Hemoglobin From the Sea Lamprey (Petromyzon Marinus) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe150
b:23.2
occ:1.00
|
FE
|
B:HEM150
|
0.0
|
23.2
|
1.0
|
|
NE2
|
B:HIS105
|
1.9
|
11.7
|
1.0
|
|
ND
|
B:HEM150
|
2.0
|
23.2
|
1.0
|
|
NC
|
B:HEM150
|
2.0
|
23.2
|
1.0
|
|
NA
|
B:HEM150
|
2.0
|
23.2
|
1.0
|
|
NB
|
B:HEM150
|
2.0
|
23.2
|
1.0
|
|
CE1
|
B:HIS105
|
2.9
|
11.7
|
1.0
|
|
C4D
|
B:HEM150
|
3.0
|
23.2
|
1.0
|
|
C1D
|
B:HEM150
|
3.0
|
23.2
|
1.0
|
|
CD2
|
B:HIS105
|
3.1
|
11.7
|
1.0
|
|
C4C
|
B:HEM150
|
3.1
|
23.2
|
1.0
|
|
C1C
|
B:HEM150
|
3.1
|
23.2
|
1.0
|
|
C4A
|
B:HEM150
|
3.1
|
23.2
|
1.0
|
|
C1A
|
B:HEM150
|
3.1
|
23.2
|
1.0
|
|
C4B
|
B:HEM150
|
3.1
|
23.2
|
1.0
|
|
C1B
|
B:HEM150
|
3.1
|
23.2
|
1.0
|
|
CHD
|
B:HEM150
|
3.4
|
23.2
|
1.0
|
|
CHC
|
B:HEM150
|
3.4
|
23.2
|
1.0
|
|
CHA
|
B:HEM150
|
3.4
|
23.2
|
1.0
|
|
CHB
|
B:HEM150
|
3.5
|
23.2
|
1.0
|
|
ND1
|
B:HIS105
|
4.1
|
11.7
|
1.0
|
|
CG
|
B:HIS105
|
4.2
|
11.7
|
1.0
|
|
C3D
|
B:HEM150
|
4.3
|
23.2
|
1.0
|
|
C2D
|
B:HEM150
|
4.3
|
23.2
|
1.0
|
|
NE2
|
B:HIS73
|
4.3
|
15.4
|
1.0
|
|
C3A
|
B:HEM150
|
4.3
|
23.2
|
1.0
|
|
C2A
|
B:HEM150
|
4.3
|
23.2
|
1.0
|
|
C2C
|
B:HEM150
|
4.3
|
23.2
|
1.0
|
|
C3C
|
B:HEM150
|
4.3
|
23.2
|
1.0
|
|
C2B
|
B:HEM150
|
4.3
|
23.2
|
1.0
|
|
C3B
|
B:HEM150
|
4.4
|
23.2
|
1.0
|
|
CG1
|
B:ILE77
|
4.6
|
3.5
|
1.0
|
|
CD1
|
B:ILE77
|
4.7
|
3.5
|
1.0
|
|
Iron binding site 3 out
of 12 in 3lhb
Go back to
Iron Binding Sites List in 3lhb
Iron binding site 3 out
of 12 in the The 2.7 Angstrom Crystal Structure of Deoxygenated Hemoglobin From the Sea Lamprey (Petromyzon Marinus)
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of The 2.7 Angstrom Crystal Structure of Deoxygenated Hemoglobin From the Sea Lamprey (Petromyzon Marinus) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe150
b:15.2
occ:1.00
|
FE
|
C:HEM150
|
0.0
|
15.2
|
1.0
|
|
ND
|
C:HEM150
|
2.0
|
15.2
|
1.0
|
|
NC
|
C:HEM150
|
2.0
|
15.2
|
1.0
|
|
NA
|
C:HEM150
|
2.0
|
15.2
|
1.0
|
|
NB
|
C:HEM150
|
2.0
|
15.2
|
1.0
|
|
NE2
|
C:HIS105
|
2.0
|
17.6
|
1.0
|
|
CE1
|
C:HIS105
|
2.9
|
17.6
|
1.0
|
|
C1C
|
C:HEM150
|
3.0
|
15.2
|
1.0
|
|
C4D
|
C:HEM150
|
3.0
|
15.2
|
1.0
|
|
C1D
|
C:HEM150
|
3.0
|
15.2
|
1.0
|
|
C4A
|
C:HEM150
|
3.0
|
15.2
|
1.0
|
|
C4C
|
C:HEM150
|
3.1
|
15.2
|
1.0
|
|
C4B
|
C:HEM150
|
3.1
|
15.2
|
1.0
|
|
C1A
|
C:HEM150
|
3.1
|
15.2
|
1.0
|
|
C1B
|
C:HEM150
|
3.1
|
15.2
|
1.0
|
|
CD2
|
C:HIS105
|
3.1
|
17.6
|
1.0
|
|
CHC
|
C:HEM150
|
3.4
|
15.2
|
1.0
|
|
CHD
|
C:HEM150
|
3.4
|
15.2
|
1.0
|
|
CHA
|
C:HEM150
|
3.4
|
15.2
|
1.0
|
|
CHB
|
C:HEM150
|
3.4
|
15.2
|
1.0
|
|
ND1
|
C:HIS105
|
4.1
|
17.6
|
1.0
|
|
CG
|
C:HIS105
|
4.2
|
17.6
|
1.0
|
|
NE2
|
C:HIS73
|
4.2
|
16.1
|
1.0
|
|
C2D
|
C:HEM150
|
4.3
|
15.2
|
1.0
|
|
C3D
|
C:HEM150
|
4.3
|
15.2
|
1.0
|
|
C3A
|
C:HEM150
|
4.3
|
15.2
|
1.0
|
|
C2C
|
C:HEM150
|
4.3
|
15.2
|
1.0
|
|
C2A
|
C:HEM150
|
4.3
|
15.2
|
1.0
|
|
C2B
|
C:HEM150
|
4.3
|
15.2
|
1.0
|
|
C3B
|
C:HEM150
|
4.3
|
15.2
|
1.0
|
|
C3C
|
C:HEM150
|
4.3
|
15.2
|
1.0
|
|
CG1
|
C:ILE77
|
4.6
|
6.8
|
1.0
|
|
CD1
|
C:ILE77
|
4.6
|
6.8
|
1.0
|
|
Iron binding site 4 out
of 12 in 3lhb
Go back to
Iron Binding Sites List in 3lhb
Iron binding site 4 out
of 12 in the The 2.7 Angstrom Crystal Structure of Deoxygenated Hemoglobin From the Sea Lamprey (Petromyzon Marinus)
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of The 2.7 Angstrom Crystal Structure of Deoxygenated Hemoglobin From the Sea Lamprey (Petromyzon Marinus) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe150
b:16.8
occ:1.00
|
FE
|
D:HEM150
|
0.0
|
16.8
|
1.0
|
|
NC
|
D:HEM150
|
1.9
|
16.8
|
1.0
|
|
NB
|
D:HEM150
|
2.0
|
16.8
|
1.0
|
|
ND
|
D:HEM150
|
2.0
|
16.8
|
1.0
|
|
NE2
|
D:HIS105
|
2.0
|
7.4
|
1.0
|
|
NA
|
D:HEM150
|
2.0
|
16.8
|
1.0
|
|
CE1
|
D:HIS105
|
3.0
|
7.4
|
1.0
|
|
C1C
|
D:HEM150
|
3.0
|
16.8
|
1.0
|
|
C4C
|
D:HEM150
|
3.0
|
16.8
|
1.0
|
|
C4B
|
D:HEM150
|
3.0
|
16.8
|
1.0
|
|
C1D
|
D:HEM150
|
3.0
|
16.8
|
1.0
|
|
C4D
|
D:HEM150
|
3.0
|
16.8
|
1.0
|
|
C1B
|
D:HEM150
|
3.1
|
16.8
|
1.0
|
|
C4A
|
D:HEM150
|
3.1
|
16.8
|
1.0
|
|
C1A
|
D:HEM150
|
3.1
|
16.8
|
1.0
|
|
CD2
|
D:HIS105
|
3.1
|
7.4
|
1.0
|
|
CHC
|
D:HEM150
|
3.4
|
16.8
|
1.0
|
|
CHD
|
D:HEM150
|
3.4
|
16.8
|
1.0
|
|
CHB
|
D:HEM150
|
3.5
|
16.8
|
1.0
|
|
CHA
|
D:HEM150
|
3.5
|
16.8
|
1.0
|
|
ND1
|
D:HIS105
|
4.1
|
7.4
|
1.0
|
|
NE2
|
D:HIS73
|
4.2
|
17.9
|
1.0
|
|
CG
|
D:HIS105
|
4.2
|
7.4
|
1.0
|
|
C2C
|
D:HEM150
|
4.3
|
16.8
|
1.0
|
|
C3C
|
D:HEM150
|
4.3
|
16.8
|
1.0
|
|
C2D
|
D:HEM150
|
4.3
|
16.8
|
1.0
|
|
C3D
|
D:HEM150
|
4.3
|
16.8
|
1.0
|
|
C3B
|
D:HEM150
|
4.3
|
16.8
|
1.0
|
|
C2B
|
D:HEM150
|
4.3
|
16.8
|
1.0
|
|
C3A
|
D:HEM150
|
4.3
|
16.8
|
1.0
|
|
C2A
|
D:HEM150
|
4.4
|
16.8
|
1.0
|
|
CG1
|
D:ILE77
|
4.6
|
5.4
|
1.0
|
|
CD1
|
D:ILE77
|
4.6
|
5.4
|
1.0
|
|
Iron binding site 5 out
of 12 in 3lhb
Go back to
Iron Binding Sites List in 3lhb
Iron binding site 5 out
of 12 in the The 2.7 Angstrom Crystal Structure of Deoxygenated Hemoglobin From the Sea Lamprey (Petromyzon Marinus)
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of The 2.7 Angstrom Crystal Structure of Deoxygenated Hemoglobin From the Sea Lamprey (Petromyzon Marinus) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe150
b:22.9
occ:1.00
|
FE
|
E:HEM150
|
0.0
|
22.9
|
1.0
|
|
NE2
|
E:HIS105
|
2.0
|
27.4
|
1.0
|
|
NA
|
E:HEM150
|
2.0
|
22.9
|
1.0
|
|
NB
|
E:HEM150
|
2.0
|
22.9
|
1.0
|
|
ND
|
E:HEM150
|
2.0
|
22.9
|
1.0
|
|
NC
|
E:HEM150
|
2.0
|
22.9
|
1.0
|
|
CE1
|
E:HIS105
|
2.9
|
27.4
|
1.0
|
|
C4A
|
E:HEM150
|
3.0
|
22.9
|
1.0
|
|
C1B
|
E:HEM150
|
3.0
|
22.9
|
1.0
|
|
C4B
|
E:HEM150
|
3.1
|
22.9
|
1.0
|
|
C1D
|
E:HEM150
|
3.1
|
22.9
|
1.0
|
|
C1C
|
E:HEM150
|
3.1
|
22.9
|
1.0
|
|
C4D
|
E:HEM150
|
3.1
|
22.9
|
1.0
|
|
C4C
|
E:HEM150
|
3.1
|
22.9
|
1.0
|
|
C1A
|
E:HEM150
|
3.1
|
22.9
|
1.0
|
|
CD2
|
E:HIS105
|
3.1
|
27.4
|
1.0
|
|
CHB
|
E:HEM150
|
3.4
|
22.9
|
1.0
|
|
CHD
|
E:HEM150
|
3.4
|
22.9
|
1.0
|
|
CHC
|
E:HEM150
|
3.4
|
22.9
|
1.0
|
|
CHA
|
E:HEM150
|
3.5
|
22.9
|
1.0
|
|
ND1
|
E:HIS105
|
4.1
|
27.4
|
1.0
|
|
CG
|
E:HIS105
|
4.2
|
27.4
|
1.0
|
|
C2B
|
E:HEM150
|
4.3
|
22.9
|
1.0
|
|
C3D
|
E:HEM150
|
4.3
|
22.9
|
1.0
|
|
NE2
|
E:HIS73
|
4.3
|
29.6
|
1.0
|
|
C3A
|
E:HEM150
|
4.3
|
22.9
|
1.0
|
|
C2A
|
E:HEM150
|
4.3
|
22.9
|
1.0
|
|
C2D
|
E:HEM150
|
4.3
|
22.9
|
1.0
|
|
C3B
|
E:HEM150
|
4.3
|
22.9
|
1.0
|
|
C2C
|
E:HEM150
|
4.3
|
22.9
|
1.0
|
|
C3C
|
E:HEM150
|
4.3
|
22.9
|
1.0
|
|
CG1
|
E:ILE77
|
4.6
|
17.2
|
1.0
|
|
CD1
|
E:ILE77
|
4.6
|
17.2
|
1.0
|
|
Iron binding site 6 out
of 12 in 3lhb
Go back to
Iron Binding Sites List in 3lhb
Iron binding site 6 out
of 12 in the The 2.7 Angstrom Crystal Structure of Deoxygenated Hemoglobin From the Sea Lamprey (Petromyzon Marinus)
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of The 2.7 Angstrom Crystal Structure of Deoxygenated Hemoglobin From the Sea Lamprey (Petromyzon Marinus) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Fe150
b:25.1
occ:1.00
|
FE
|
F:HEM150
|
0.0
|
25.1
|
1.0
|
|
NA
|
F:HEM150
|
2.0
|
25.1
|
1.0
|
|
ND
|
F:HEM150
|
2.0
|
25.1
|
1.0
|
|
NB
|
F:HEM150
|
2.0
|
25.1
|
1.0
|
|
NE2
|
F:HIS105
|
2.0
|
32.1
|
1.0
|
|
NC
|
F:HEM150
|
2.0
|
25.1
|
1.0
|
|
CE1
|
F:HIS105
|
2.9
|
32.1
|
1.0
|
|
C4D
|
F:HEM150
|
3.0
|
25.1
|
1.0
|
|
C1A
|
F:HEM150
|
3.0
|
25.1
|
1.0
|
|
C4A
|
F:HEM150
|
3.0
|
25.1
|
1.0
|
|
C1D
|
F:HEM150
|
3.0
|
25.1
|
1.0
|
|
C1B
|
F:HEM150
|
3.1
|
25.1
|
1.0
|
|
C4B
|
F:HEM150
|
3.1
|
25.1
|
1.0
|
|
C4C
|
F:HEM150
|
3.1
|
25.1
|
1.0
|
|
C1C
|
F:HEM150
|
3.1
|
25.1
|
1.0
|
|
CD2
|
F:HIS105
|
3.1
|
32.1
|
1.0
|
|
CHA
|
F:HEM150
|
3.4
|
25.1
|
1.0
|
|
CHB
|
F:HEM150
|
3.4
|
25.1
|
1.0
|
|
CHD
|
F:HEM150
|
3.4
|
25.1
|
1.0
|
|
CHC
|
F:HEM150
|
3.5
|
25.1
|
1.0
|
|
ND1
|
F:HIS105
|
4.1
|
32.1
|
1.0
|
|
NE2
|
F:HIS73
|
4.2
|
28.5
|
1.0
|
|
CG
|
F:HIS105
|
4.2
|
32.1
|
1.0
|
|
C2A
|
F:HEM150
|
4.3
|
25.1
|
1.0
|
|
C3A
|
F:HEM150
|
4.3
|
25.1
|
1.0
|
|
C3D
|
F:HEM150
|
4.3
|
25.1
|
1.0
|
|
C2D
|
F:HEM150
|
4.3
|
25.1
|
1.0
|
|
C2B
|
F:HEM150
|
4.3
|
25.1
|
1.0
|
|
C3B
|
F:HEM150
|
4.3
|
25.1
|
1.0
|
|
C2C
|
F:HEM150
|
4.3
|
25.1
|
1.0
|
|
C3C
|
F:HEM150
|
4.3
|
25.1
|
1.0
|
|
CG1
|
F:ILE77
|
4.5
|
14.9
|
1.0
|
|
CD1
|
F:ILE77
|
4.6
|
14.9
|
1.0
|
|
Iron binding site 7 out
of 12 in 3lhb
Go back to
Iron Binding Sites List in 3lhb
Iron binding site 7 out
of 12 in the The 2.7 Angstrom Crystal Structure of Deoxygenated Hemoglobin From the Sea Lamprey (Petromyzon Marinus)
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of The 2.7 Angstrom Crystal Structure of Deoxygenated Hemoglobin From the Sea Lamprey (Petromyzon Marinus) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Fe150
b:27.0
occ:1.00
|
FE
|
G:HEM150
|
0.0
|
27.0
|
1.0
|
|
NB
|
G:HEM150
|
2.0
|
27.0
|
1.0
|
|
NA
|
G:HEM150
|
2.0
|
27.0
|
1.0
|
|
NC
|
G:HEM150
|
2.0
|
27.0
|
1.0
|
|
ND
|
G:HEM150
|
2.0
|
27.0
|
1.0
|
|
NE2
|
G:HIS105
|
2.1
|
22.2
|
1.0
|
|
CE1
|
G:HIS105
|
3.0
|
22.2
|
1.0
|
|
C4A
|
G:HEM150
|
3.0
|
27.0
|
1.0
|
|
C1B
|
G:HEM150
|
3.0
|
27.0
|
1.0
|
|
C4B
|
G:HEM150
|
3.0
|
27.0
|
1.0
|
|
C1A
|
G:HEM150
|
3.0
|
27.0
|
1.0
|
|
C1C
|
G:HEM150
|
3.0
|
27.0
|
1.0
|
|
C4D
|
G:HEM150
|
3.1
|
27.0
|
1.0
|
|
C4C
|
G:HEM150
|
3.1
|
27.0
|
1.0
|
|
C1D
|
G:HEM150
|
3.1
|
27.0
|
1.0
|
|
CD2
|
G:HIS105
|
3.2
|
22.2
|
1.0
|
|
CHB
|
G:HEM150
|
3.4
|
27.0
|
1.0
|
|
CHC
|
G:HEM150
|
3.4
|
27.0
|
1.0
|
|
CHA
|
G:HEM150
|
3.4
|
27.0
|
1.0
|
|
CHD
|
G:HEM150
|
3.4
|
27.0
|
1.0
|
|
ND1
|
G:HIS105
|
4.2
|
22.2
|
1.0
|
|
NE2
|
G:HIS73
|
4.2
|
20.3
|
1.0
|
|
C3A
|
G:HEM150
|
4.2
|
27.0
|
1.0
|
|
C2B
|
G:HEM150
|
4.3
|
27.0
|
1.0
|
|
C3B
|
G:HEM150
|
4.3
|
27.0
|
1.0
|
|
C2A
|
G:HEM150
|
4.3
|
27.0
|
1.0
|
|
CG
|
G:HIS105
|
4.3
|
22.2
|
1.0
|
|
C2C
|
G:HEM150
|
4.3
|
27.0
|
1.0
|
|
C3D
|
G:HEM150
|
4.3
|
27.0
|
1.0
|
|
C2D
|
G:HEM150
|
4.3
|
27.0
|
1.0
|
|
C3C
|
G:HEM150
|
4.3
|
27.0
|
1.0
|
|
CD1
|
G:ILE77
|
4.5
|
11.9
|
1.0
|
|
CG1
|
G:ILE77
|
4.5
|
11.9
|
1.0
|
|
Iron binding site 8 out
of 12 in 3lhb
Go back to
Iron Binding Sites List in 3lhb
Iron binding site 8 out
of 12 in the The 2.7 Angstrom Crystal Structure of Deoxygenated Hemoglobin From the Sea Lamprey (Petromyzon Marinus)
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of The 2.7 Angstrom Crystal Structure of Deoxygenated Hemoglobin From the Sea Lamprey (Petromyzon Marinus) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Fe150
b:25.8
occ:1.00
|
FE
|
H:HEM150
|
0.0
|
25.8
|
1.0
|
|
ND
|
H:HEM150
|
2.0
|
25.8
|
1.0
|
|
NA
|
H:HEM150
|
2.0
|
25.8
|
1.0
|
|
NC
|
H:HEM150
|
2.0
|
25.8
|
1.0
|
|
NB
|
H:HEM150
|
2.0
|
25.8
|
1.0
|
|
NE2
|
H:HIS105
|
2.0
|
17.5
|
1.0
|
|
CE1
|
H:HIS105
|
3.0
|
17.5
|
1.0
|
|
C1D
|
H:HEM150
|
3.0
|
25.8
|
1.0
|
|
C4D
|
H:HEM150
|
3.0
|
25.8
|
1.0
|
|
C4A
|
H:HEM150
|
3.0
|
25.8
|
1.0
|
|
C1A
|
H:HEM150
|
3.0
|
25.8
|
1.0
|
|
C4C
|
H:HEM150
|
3.0
|
25.8
|
1.0
|
|
C1C
|
H:HEM150
|
3.1
|
25.8
|
1.0
|
|
C1B
|
H:HEM150
|
3.1
|
25.8
|
1.0
|
|
C4B
|
H:HEM150
|
3.1
|
25.8
|
1.0
|
|
CD2
|
H:HIS105
|
3.1
|
17.5
|
1.0
|
|
CHD
|
H:HEM150
|
3.4
|
25.8
|
1.0
|
|
CHA
|
H:HEM150
|
3.4
|
25.8
|
1.0
|
|
CHB
|
H:HEM150
|
3.4
|
25.8
|
1.0
|
|
CHC
|
H:HEM150
|
3.4
|
25.8
|
1.0
|
|
ND1
|
H:HIS105
|
4.1
|
17.5
|
1.0
|
|
NE2
|
H:HIS73
|
4.2
|
25.8
|
1.0
|
|
C3D
|
H:HEM150
|
4.2
|
25.8
|
1.0
|
|
C2D
|
H:HEM150
|
4.2
|
25.8
|
1.0
|
|
CG
|
H:HIS105
|
4.3
|
17.5
|
1.0
|
|
C3A
|
H:HEM150
|
4.3
|
25.8
|
1.0
|
|
C2A
|
H:HEM150
|
4.3
|
25.8
|
1.0
|
|
C2C
|
H:HEM150
|
4.3
|
25.8
|
1.0
|
|
C3C
|
H:HEM150
|
4.3
|
25.8
|
1.0
|
|
C2B
|
H:HEM150
|
4.3
|
25.8
|
1.0
|
|
C3B
|
H:HEM150
|
4.3
|
25.8
|
1.0
|
|
CG1
|
H:ILE77
|
4.6
|
18.8
|
1.0
|
|
CD1
|
H:ILE77
|
4.6
|
18.8
|
1.0
|
|
Iron binding site 9 out
of 12 in 3lhb
Go back to
Iron Binding Sites List in 3lhb
Iron binding site 9 out
of 12 in the The 2.7 Angstrom Crystal Structure of Deoxygenated Hemoglobin From the Sea Lamprey (Petromyzon Marinus)
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of The 2.7 Angstrom Crystal Structure of Deoxygenated Hemoglobin From the Sea Lamprey (Petromyzon Marinus) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Fe150
b:26.2
occ:1.00
|
FE
|
I:HEM150
|
0.0
|
26.2
|
1.0
|
|
NC
|
I:HEM150
|
2.0
|
26.2
|
1.0
|
|
ND
|
I:HEM150
|
2.0
|
26.2
|
1.0
|
|
NB
|
I:HEM150
|
2.0
|
26.2
|
1.0
|
|
NA
|
I:HEM150
|
2.0
|
26.2
|
1.0
|
|
NE2
|
I:HIS105
|
2.1
|
35.6
|
1.0
|
|
C4C
|
I:HEM150
|
3.0
|
26.2
|
1.0
|
|
C1C
|
I:HEM150
|
3.0
|
26.2
|
1.0
|
|
C1D
|
I:HEM150
|
3.0
|
26.2
|
1.0
|
|
C4B
|
I:HEM150
|
3.0
|
26.2
|
1.0
|
|
C4D
|
I:HEM150
|
3.0
|
26.2
|
1.0
|
|
CE1
|
I:HIS105
|
3.0
|
35.6
|
1.0
|
|
C1B
|
I:HEM150
|
3.0
|
26.2
|
1.0
|
|
C4A
|
I:HEM150
|
3.0
|
26.2
|
1.0
|
|
C1A
|
I:HEM150
|
3.1
|
26.2
|
1.0
|
|
CD2
|
I:HIS105
|
3.2
|
35.6
|
1.0
|
|
CHC
|
I:HEM150
|
3.4
|
26.2
|
1.0
|
|
CHD
|
I:HEM150
|
3.4
|
26.2
|
1.0
|
|
CHB
|
I:HEM150
|
3.4
|
26.2
|
1.0
|
|
CHA
|
I:HEM150
|
3.4
|
26.2
|
1.0
|
|
NE2
|
I:HIS73
|
4.2
|
55.2
|
1.0
|
|
ND1
|
I:HIS105
|
4.2
|
35.6
|
1.0
|
|
C2D
|
I:HEM150
|
4.3
|
26.2
|
1.0
|
|
C2C
|
I:HEM150
|
4.3
|
26.2
|
1.0
|
|
C3D
|
I:HEM150
|
4.3
|
26.2
|
1.0
|
|
C3C
|
I:HEM150
|
4.3
|
26.2
|
1.0
|
|
C3A
|
I:HEM150
|
4.3
|
26.2
|
1.0
|
|
C3B
|
I:HEM150
|
4.3
|
26.2
|
1.0
|
|
C2B
|
I:HEM150
|
4.3
|
26.2
|
1.0
|
|
C2A
|
I:HEM150
|
4.3
|
26.2
|
1.0
|
|
CG
|
I:HIS105
|
4.3
|
35.6
|
1.0
|
|
CG1
|
I:ILE77
|
4.5
|
16.9
|
1.0
|
|
CD1
|
I:ILE77
|
4.5
|
16.9
|
1.0
|
|
Iron binding site 10 out
of 12 in 3lhb
Go back to
Iron Binding Sites List in 3lhb
Iron binding site 10 out
of 12 in the The 2.7 Angstrom Crystal Structure of Deoxygenated Hemoglobin From the Sea Lamprey (Petromyzon Marinus)
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of The 2.7 Angstrom Crystal Structure of Deoxygenated Hemoglobin From the Sea Lamprey (Petromyzon Marinus) within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Fe150
b:26.7
occ:1.00
|
FE
|
J:HEM150
|
0.0
|
26.7
|
1.0
|
|
NB
|
J:HEM150
|
2.0
|
26.7
|
1.0
|
|
NC
|
J:HEM150
|
2.0
|
26.7
|
1.0
|
|
NA
|
J:HEM150
|
2.0
|
26.7
|
1.0
|
|
ND
|
J:HEM150
|
2.0
|
26.7
|
1.0
|
|
NE2
|
J:HIS105
|
2.1
|
15.6
|
1.0
|
|
CE1
|
J:HIS105
|
3.0
|
15.6
|
1.0
|
|
C4B
|
J:HEM150
|
3.0
|
26.7
|
1.0
|
|
C1C
|
J:HEM150
|
3.0
|
26.7
|
1.0
|
|
C4C
|
J:HEM150
|
3.0
|
26.7
|
1.0
|
|
C1B
|
J:HEM150
|
3.0
|
26.7
|
1.0
|
|
C1D
|
J:HEM150
|
3.0
|
26.7
|
1.0
|
|
C4A
|
J:HEM150
|
3.0
|
26.7
|
1.0
|
|
C4D
|
J:HEM150
|
3.0
|
26.7
|
1.0
|
|
C1A
|
J:HEM150
|
3.1
|
26.7
|
1.0
|
|
CD2
|
J:HIS105
|
3.2
|
15.6
|
1.0
|
|
CHC
|
J:HEM150
|
3.4
|
26.7
|
1.0
|
|
CHD
|
J:HEM150
|
3.4
|
26.7
|
1.0
|
|
CHB
|
J:HEM150
|
3.4
|
26.7
|
1.0
|
|
CHA
|
J:HEM150
|
3.4
|
26.7
|
1.0
|
|
ND1
|
J:HIS105
|
4.2
|
15.6
|
1.0
|
|
NE2
|
J:HIS73
|
4.2
|
16.2
|
1.0
|
|
C2C
|
J:HEM150
|
4.3
|
26.7
|
1.0
|
|
C2B
|
J:HEM150
|
4.3
|
26.7
|
1.0
|
|
C3B
|
J:HEM150
|
4.3
|
26.7
|
1.0
|
|
CG
|
J:HIS105
|
4.3
|
15.6
|
1.0
|
|
C2D
|
J:HEM150
|
4.3
|
26.7
|
1.0
|
|
C3C
|
J:HEM150
|
4.3
|
26.7
|
1.0
|
|
C3D
|
J:HEM150
|
4.3
|
26.7
|
1.0
|
|
C3A
|
J:HEM150
|
4.3
|
26.7
|
1.0
|
|
C2A
|
J:HEM150
|
4.3
|
26.7
|
1.0
|
|
CG1
|
J:ILE77
|
4.5
|
9.3
|
1.0
|
|
CD1
|
J:ILE77
|
4.5
|
9.3
|
1.0
|
|
Reference:
H.A.Heaslet,
W.E.Royer Jr..
The 2.7 A Crystal Structure of Deoxygenated Hemoglobin From the Sea Lamprey (Petromyzon Marinus): Structural Basis For A Lowered Oxygen Affinity and Bohr Effect. Structure Fold.Des. V. 7 517 1999.
ISSN: ISSN 0969-2126
PubMed: 10378271
DOI: 10.1016/S0969-2126(99)80068-9
Page generated: Sun Aug 4 14:21:26 2024
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