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Iron in PDB 3lqd: Crystal Structure Determination of Lepus Europaeus 2.8 A Resolution

Protein crystallography data

The structure of Crystal Structure Determination of Lepus Europaeus 2.8 A Resolution, PDB code: 3lqd was solved by M.Thenmozhi, Pon.Sathya Moothy, M.Balasubramanian, M.N.Ponnuswamy, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.35 / 2.80
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 118.457, 54.954, 91.380, 90.00, 97.70, 90.00
R / Rfree (%) 21.9 / 27.9

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure Determination of Lepus Europaeus 2.8 A Resolution (pdb code 3lqd). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Crystal Structure Determination of Lepus Europaeus 2.8 A Resolution, PDB code: 3lqd:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 3lqd

Go back to Iron Binding Sites List in 3lqd
Iron binding site 1 out of 4 in the Crystal Structure Determination of Lepus Europaeus 2.8 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure Determination of Lepus Europaeus 2.8 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe142

b:26.5
occ:1.00
FE A:HEM142 0.0 26.5 1.0
ND A:HEM142 2.0 26.5 1.0
NB A:HEM142 2.0 25.8 1.0
NC A:HEM142 2.1 23.2 1.0
NA A:HEM142 2.1 26.0 1.0
NE2 A:HIS87 2.1 29.7 1.0
O2 A:OXY143 2.2 34.9 1.0
O1 A:OXY143 2.9 32.7 1.0
C4B A:HEM142 3.0 26.6 1.0
C4D A:HEM142 3.0 27.7 1.0
C1D A:HEM142 3.1 25.8 1.0
CE1 A:HIS87 3.1 30.6 1.0
C1A A:HEM142 3.1 26.3 1.0
C4C A:HEM142 3.1 23.7 1.0
C4A A:HEM142 3.1 26.8 1.0
C1C A:HEM142 3.1 21.1 1.0
C1B A:HEM142 3.1 25.3 1.0
CD2 A:HIS87 3.2 28.8 1.0
CHC A:HEM142 3.4 24.0 1.0
CHA A:HEM142 3.4 24.7 1.0
CHD A:HEM142 3.4 23.7 1.0
CHB A:HEM142 3.5 27.0 1.0
ND1 A:HIS87 4.2 30.6 1.0
C3B A:HEM142 4.3 25.9 1.0
CG A:HIS87 4.3 29.1 1.0
C3A A:HEM142 4.3 26.3 1.0
C3D A:HEM142 4.3 27.5 1.0
C2B A:HEM142 4.3 23.7 1.0
C2A A:HEM142 4.3 26.7 1.0
C2D A:HEM142 4.3 26.3 1.0
C2C A:HEM142 4.3 20.0 1.0
C3C A:HEM142 4.3 21.4 1.0
NE2 A:HIS58 4.4 37.0 1.0
CE1 A:HIS58 4.6 36.9 1.0
CG2 A:VAL62 4.6 37.0 1.0

Iron binding site 2 out of 4 in 3lqd

Go back to Iron Binding Sites List in 3lqd
Iron binding site 2 out of 4 in the Crystal Structure Determination of Lepus Europaeus 2.8 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure Determination of Lepus Europaeus 2.8 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe147

b:37.4
occ:1.00
FE B:HEM147 0.0 37.4 1.0
O2 B:OXY148 1.9 48.0 1.0
NC B:HEM147 2.0 37.1 1.0
NB B:HEM147 2.0 36.5 1.0
NE2 B:HIS92 2.0 40.4 1.0
ND B:HEM147 2.1 37.7 1.0
NA B:HEM147 2.1 38.8 1.0
O1 B:OXY148 2.4 47.5 1.0
CE1 B:HIS92 2.9 39.8 1.0
C4B B:HEM147 3.0 35.9 1.0
C1C B:HEM147 3.0 36.4 1.0
C1D B:HEM147 3.1 38.0 1.0
C4C B:HEM147 3.1 36.7 1.0
C4D B:HEM147 3.1 38.2 1.0
C1B B:HEM147 3.1 35.7 1.0
C4A B:HEM147 3.1 38.9 1.0
C1A B:HEM147 3.1 40.0 1.0
CD2 B:HIS92 3.2 41.8 1.0
CHC B:HEM147 3.4 35.9 1.0
CHD B:HEM147 3.4 37.4 1.0
CHA B:HEM147 3.4 38.9 1.0
CHB B:HEM147 3.5 37.5 1.0
ND1 B:HIS92 4.1 40.8 1.0
CG B:HIS92 4.2 43.3 1.0
C3B B:HEM147 4.2 34.4 1.0
C2C B:HEM147 4.3 36.1 1.0
C3C B:HEM147 4.3 35.7 1.0
C2B B:HEM147 4.3 35.0 1.0
C3D B:HEM147 4.3 38.1 1.0
C2D B:HEM147 4.3 37.5 1.0
C3A B:HEM147 4.3 40.7 1.0
C2A B:HEM147 4.3 42.0 1.0
NE2 B:HIS63 4.3 24.8 1.0

Iron binding site 3 out of 4 in 3lqd

Go back to Iron Binding Sites List in 3lqd
Iron binding site 3 out of 4 in the Crystal Structure Determination of Lepus Europaeus 2.8 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure Determination of Lepus Europaeus 2.8 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe142

b:28.2
occ:1.00
FE C:HEM142 0.0 28.2 1.0
O2 C:OXY143 1.6 33.6 1.0
ND C:HEM142 2.0 28.8 1.0
NB C:HEM142 2.1 27.7 1.0
NC C:HEM142 2.1 27.7 1.0
NA C:HEM142 2.1 29.2 1.0
NE2 C:HIS87 2.1 32.1 1.0
O1 C:OXY143 2.4 34.3 1.0
CE1 C:HIS87 3.0 31.7 1.0
C4D C:HEM142 3.0 29.6 1.0
C1D C:HEM142 3.1 29.3 1.0
C4C C:HEM142 3.1 27.1 1.0
C1B C:HEM142 3.1 26.8 1.0
C1C C:HEM142 3.1 27.8 1.0
C4B C:HEM142 3.1 27.7 1.0
C1A C:HEM142 3.1 29.2 1.0
C4A C:HEM142 3.1 28.8 1.0
CD2 C:HIS87 3.3 30.9 1.0
CHA C:HEM142 3.4 29.6 1.0
CHC C:HEM142 3.4 26.9 1.0
CHB C:HEM142 3.5 28.5 1.0
CHD C:HEM142 3.5 28.0 1.0
NE2 C:HIS58 4.1 36.9 1.0
ND1 C:HIS87 4.2 31.4 1.0
C3D C:HEM142 4.2 29.1 1.0
C3C C:HEM142 4.3 27.3 1.0
C2D C:HEM142 4.3 29.1 1.0
C2C C:HEM142 4.3 28.3 1.0
C2B C:HEM142 4.3 26.5 1.0
C3B C:HEM142 4.3 27.0 1.0
CG C:HIS87 4.3 30.2 1.0
C3A C:HEM142 4.4 27.2 1.0
CE1 C:HIS58 4.4 37.0 1.0
C2A C:HEM142 4.4 28.4 1.0
CG2 C:VAL62 4.9 27.4 1.0

Iron binding site 4 out of 4 in 3lqd

Go back to Iron Binding Sites List in 3lqd
Iron binding site 4 out of 4 in the Crystal Structure Determination of Lepus Europaeus 2.8 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure Determination of Lepus Europaeus 2.8 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe147

b:35.2
occ:1.00
FE D:HEM147 0.0 35.2 1.0
O2 D:OXY148 1.9 37.5 1.0
ND D:HEM147 2.0 35.0 1.0
NA D:HEM147 2.1 35.1 1.0
NC D:HEM147 2.1 35.1 1.0
NE2 D:HIS92 2.1 38.4 1.0
NB D:HEM147 2.1 34.5 1.0
O1 D:OXY148 2.7 38.8 1.0
CE1 D:HIS92 2.9 38.5 1.0
C4D D:HEM147 3.0 35.6 1.0
C1D D:HEM147 3.1 35.3 1.0
C1A D:HEM147 3.1 35.5 1.0
C1C D:HEM147 3.1 34.5 1.0
C4A D:HEM147 3.1 34.8 1.0
C4C D:HEM147 3.1 35.3 1.0
C4B D:HEM147 3.1 33.7 1.0
C1B D:HEM147 3.1 34.6 1.0
CD2 D:HIS92 3.2 39.3 1.0
CHA D:HEM147 3.4 35.1 1.0
CHD D:HEM147 3.4 35.6 1.0
CHC D:HEM147 3.4 34.9 1.0
CHB D:HEM147 3.5 34.8 1.0
NE2 D:HIS63 3.9 30.1 1.0
ND1 D:HIS92 4.1 39.0 1.0
CG D:HIS92 4.3 42.0 1.0
C3D D:HEM147 4.3 37.2 1.0
C2D D:HEM147 4.3 35.4 1.0
C2C D:HEM147 4.3 33.7 1.0
C3A D:HEM147 4.3 35.0 1.0
C3C D:HEM147 4.3 34.9 1.0
C2A D:HEM147 4.3 34.6 1.0
C3B D:HEM147 4.4 31.1 1.0
C2B D:HEM147 4.4 32.9 1.0
CE1 D:HIS63 4.5 28.3 1.0
CG2 D:VAL67 4.7 30.1 1.0

Reference:

Pon.Sathya Moothy, M.Thenmozhi, M.Balasubramanian, M.N.Ponnuswamy. Crystal Structure Determination of Lepus Europaeus 2.8 A Resolution To Be Published.
Page generated: Sun Dec 13 15:11:37 2020

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