Iron in PDB 3lqd: Crystal Structure Determination of Lepus Europaeus 2.8 A Resolution
Protein crystallography data
The structure of Crystal Structure Determination of Lepus Europaeus 2.8 A Resolution, PDB code: 3lqd
was solved by
M.Thenmozhi,
Pon.Sathya Moothy,
M.Balasubramanian,
M.N.Ponnuswamy,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
29.35 /
2.80
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
118.457,
54.954,
91.380,
90.00,
97.70,
90.00
|
R / Rfree (%)
|
21.9 /
27.9
|
Iron Binding Sites:
The binding sites of Iron atom in the Crystal Structure Determination of Lepus Europaeus 2.8 A Resolution
(pdb code 3lqd). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the
Crystal Structure Determination of Lepus Europaeus 2.8 A Resolution, PDB code: 3lqd:
Jump to Iron binding site number:
1;
2;
3;
4;
Iron binding site 1 out
of 4 in 3lqd
Go back to
Iron Binding Sites List in 3lqd
Iron binding site 1 out
of 4 in the Crystal Structure Determination of Lepus Europaeus 2.8 A Resolution
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Crystal Structure Determination of Lepus Europaeus 2.8 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe142
b:26.5
occ:1.00
|
FE
|
A:HEM142
|
0.0
|
26.5
|
1.0
|
ND
|
A:HEM142
|
2.0
|
26.5
|
1.0
|
NB
|
A:HEM142
|
2.0
|
25.8
|
1.0
|
NC
|
A:HEM142
|
2.1
|
23.2
|
1.0
|
NA
|
A:HEM142
|
2.1
|
26.0
|
1.0
|
NE2
|
A:HIS87
|
2.1
|
29.7
|
1.0
|
O2
|
A:OXY143
|
2.2
|
34.9
|
1.0
|
O1
|
A:OXY143
|
2.9
|
32.7
|
1.0
|
C4B
|
A:HEM142
|
3.0
|
26.6
|
1.0
|
C4D
|
A:HEM142
|
3.0
|
27.7
|
1.0
|
C1D
|
A:HEM142
|
3.1
|
25.8
|
1.0
|
CE1
|
A:HIS87
|
3.1
|
30.6
|
1.0
|
C1A
|
A:HEM142
|
3.1
|
26.3
|
1.0
|
C4C
|
A:HEM142
|
3.1
|
23.7
|
1.0
|
C4A
|
A:HEM142
|
3.1
|
26.8
|
1.0
|
C1C
|
A:HEM142
|
3.1
|
21.1
|
1.0
|
C1B
|
A:HEM142
|
3.1
|
25.3
|
1.0
|
CD2
|
A:HIS87
|
3.2
|
28.8
|
1.0
|
CHC
|
A:HEM142
|
3.4
|
24.0
|
1.0
|
CHA
|
A:HEM142
|
3.4
|
24.7
|
1.0
|
CHD
|
A:HEM142
|
3.4
|
23.7
|
1.0
|
CHB
|
A:HEM142
|
3.5
|
27.0
|
1.0
|
ND1
|
A:HIS87
|
4.2
|
30.6
|
1.0
|
C3B
|
A:HEM142
|
4.3
|
25.9
|
1.0
|
CG
|
A:HIS87
|
4.3
|
29.1
|
1.0
|
C3A
|
A:HEM142
|
4.3
|
26.3
|
1.0
|
C3D
|
A:HEM142
|
4.3
|
27.5
|
1.0
|
C2B
|
A:HEM142
|
4.3
|
23.7
|
1.0
|
C2A
|
A:HEM142
|
4.3
|
26.7
|
1.0
|
C2D
|
A:HEM142
|
4.3
|
26.3
|
1.0
|
C2C
|
A:HEM142
|
4.3
|
20.0
|
1.0
|
C3C
|
A:HEM142
|
4.3
|
21.4
|
1.0
|
NE2
|
A:HIS58
|
4.4
|
37.0
|
1.0
|
CE1
|
A:HIS58
|
4.6
|
36.9
|
1.0
|
CG2
|
A:VAL62
|
4.6
|
37.0
|
1.0
|
|
Iron binding site 2 out
of 4 in 3lqd
Go back to
Iron Binding Sites List in 3lqd
Iron binding site 2 out
of 4 in the Crystal Structure Determination of Lepus Europaeus 2.8 A Resolution
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Crystal Structure Determination of Lepus Europaeus 2.8 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe147
b:37.4
occ:1.00
|
FE
|
B:HEM147
|
0.0
|
37.4
|
1.0
|
O2
|
B:OXY148
|
1.9
|
48.0
|
1.0
|
NC
|
B:HEM147
|
2.0
|
37.1
|
1.0
|
NB
|
B:HEM147
|
2.0
|
36.5
|
1.0
|
NE2
|
B:HIS92
|
2.0
|
40.4
|
1.0
|
ND
|
B:HEM147
|
2.1
|
37.7
|
1.0
|
NA
|
B:HEM147
|
2.1
|
38.8
|
1.0
|
O1
|
B:OXY148
|
2.4
|
47.5
|
1.0
|
CE1
|
B:HIS92
|
2.9
|
39.8
|
1.0
|
C4B
|
B:HEM147
|
3.0
|
35.9
|
1.0
|
C1C
|
B:HEM147
|
3.0
|
36.4
|
1.0
|
C1D
|
B:HEM147
|
3.1
|
38.0
|
1.0
|
C4C
|
B:HEM147
|
3.1
|
36.7
|
1.0
|
C4D
|
B:HEM147
|
3.1
|
38.2
|
1.0
|
C1B
|
B:HEM147
|
3.1
|
35.7
|
1.0
|
C4A
|
B:HEM147
|
3.1
|
38.9
|
1.0
|
C1A
|
B:HEM147
|
3.1
|
40.0
|
1.0
|
CD2
|
B:HIS92
|
3.2
|
41.8
|
1.0
|
CHC
|
B:HEM147
|
3.4
|
35.9
|
1.0
|
CHD
|
B:HEM147
|
3.4
|
37.4
|
1.0
|
CHA
|
B:HEM147
|
3.4
|
38.9
|
1.0
|
CHB
|
B:HEM147
|
3.5
|
37.5
|
1.0
|
ND1
|
B:HIS92
|
4.1
|
40.8
|
1.0
|
CG
|
B:HIS92
|
4.2
|
43.3
|
1.0
|
C3B
|
B:HEM147
|
4.2
|
34.4
|
1.0
|
C2C
|
B:HEM147
|
4.3
|
36.1
|
1.0
|
C3C
|
B:HEM147
|
4.3
|
35.7
|
1.0
|
C2B
|
B:HEM147
|
4.3
|
35.0
|
1.0
|
C3D
|
B:HEM147
|
4.3
|
38.1
|
1.0
|
C2D
|
B:HEM147
|
4.3
|
37.5
|
1.0
|
C3A
|
B:HEM147
|
4.3
|
40.7
|
1.0
|
C2A
|
B:HEM147
|
4.3
|
42.0
|
1.0
|
NE2
|
B:HIS63
|
4.3
|
24.8
|
1.0
|
|
Iron binding site 3 out
of 4 in 3lqd
Go back to
Iron Binding Sites List in 3lqd
Iron binding site 3 out
of 4 in the Crystal Structure Determination of Lepus Europaeus 2.8 A Resolution
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Crystal Structure Determination of Lepus Europaeus 2.8 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe142
b:28.2
occ:1.00
|
FE
|
C:HEM142
|
0.0
|
28.2
|
1.0
|
O2
|
C:OXY143
|
1.6
|
33.6
|
1.0
|
ND
|
C:HEM142
|
2.0
|
28.8
|
1.0
|
NB
|
C:HEM142
|
2.1
|
27.7
|
1.0
|
NC
|
C:HEM142
|
2.1
|
27.7
|
1.0
|
NA
|
C:HEM142
|
2.1
|
29.2
|
1.0
|
NE2
|
C:HIS87
|
2.1
|
32.1
|
1.0
|
O1
|
C:OXY143
|
2.4
|
34.3
|
1.0
|
CE1
|
C:HIS87
|
3.0
|
31.7
|
1.0
|
C4D
|
C:HEM142
|
3.0
|
29.6
|
1.0
|
C1D
|
C:HEM142
|
3.1
|
29.3
|
1.0
|
C4C
|
C:HEM142
|
3.1
|
27.1
|
1.0
|
C1B
|
C:HEM142
|
3.1
|
26.8
|
1.0
|
C1C
|
C:HEM142
|
3.1
|
27.8
|
1.0
|
C4B
|
C:HEM142
|
3.1
|
27.7
|
1.0
|
C1A
|
C:HEM142
|
3.1
|
29.2
|
1.0
|
C4A
|
C:HEM142
|
3.1
|
28.8
|
1.0
|
CD2
|
C:HIS87
|
3.3
|
30.9
|
1.0
|
CHA
|
C:HEM142
|
3.4
|
29.6
|
1.0
|
CHC
|
C:HEM142
|
3.4
|
26.9
|
1.0
|
CHB
|
C:HEM142
|
3.5
|
28.5
|
1.0
|
CHD
|
C:HEM142
|
3.5
|
28.0
|
1.0
|
NE2
|
C:HIS58
|
4.1
|
36.9
|
1.0
|
ND1
|
C:HIS87
|
4.2
|
31.4
|
1.0
|
C3D
|
C:HEM142
|
4.2
|
29.1
|
1.0
|
C3C
|
C:HEM142
|
4.3
|
27.3
|
1.0
|
C2D
|
C:HEM142
|
4.3
|
29.1
|
1.0
|
C2C
|
C:HEM142
|
4.3
|
28.3
|
1.0
|
C2B
|
C:HEM142
|
4.3
|
26.5
|
1.0
|
C3B
|
C:HEM142
|
4.3
|
27.0
|
1.0
|
CG
|
C:HIS87
|
4.3
|
30.2
|
1.0
|
C3A
|
C:HEM142
|
4.4
|
27.2
|
1.0
|
CE1
|
C:HIS58
|
4.4
|
37.0
|
1.0
|
C2A
|
C:HEM142
|
4.4
|
28.4
|
1.0
|
CG2
|
C:VAL62
|
4.9
|
27.4
|
1.0
|
|
Iron binding site 4 out
of 4 in 3lqd
Go back to
Iron Binding Sites List in 3lqd
Iron binding site 4 out
of 4 in the Crystal Structure Determination of Lepus Europaeus 2.8 A Resolution
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Crystal Structure Determination of Lepus Europaeus 2.8 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe147
b:35.2
occ:1.00
|
FE
|
D:HEM147
|
0.0
|
35.2
|
1.0
|
O2
|
D:OXY148
|
1.9
|
37.5
|
1.0
|
ND
|
D:HEM147
|
2.0
|
35.0
|
1.0
|
NA
|
D:HEM147
|
2.1
|
35.1
|
1.0
|
NC
|
D:HEM147
|
2.1
|
35.1
|
1.0
|
NE2
|
D:HIS92
|
2.1
|
38.4
|
1.0
|
NB
|
D:HEM147
|
2.1
|
34.5
|
1.0
|
O1
|
D:OXY148
|
2.7
|
38.8
|
1.0
|
CE1
|
D:HIS92
|
2.9
|
38.5
|
1.0
|
C4D
|
D:HEM147
|
3.0
|
35.6
|
1.0
|
C1D
|
D:HEM147
|
3.1
|
35.3
|
1.0
|
C1A
|
D:HEM147
|
3.1
|
35.5
|
1.0
|
C1C
|
D:HEM147
|
3.1
|
34.5
|
1.0
|
C4A
|
D:HEM147
|
3.1
|
34.8
|
1.0
|
C4C
|
D:HEM147
|
3.1
|
35.3
|
1.0
|
C4B
|
D:HEM147
|
3.1
|
33.7
|
1.0
|
C1B
|
D:HEM147
|
3.1
|
34.6
|
1.0
|
CD2
|
D:HIS92
|
3.2
|
39.3
|
1.0
|
CHA
|
D:HEM147
|
3.4
|
35.1
|
1.0
|
CHD
|
D:HEM147
|
3.4
|
35.6
|
1.0
|
CHC
|
D:HEM147
|
3.4
|
34.9
|
1.0
|
CHB
|
D:HEM147
|
3.5
|
34.8
|
1.0
|
NE2
|
D:HIS63
|
3.9
|
30.1
|
1.0
|
ND1
|
D:HIS92
|
4.1
|
39.0
|
1.0
|
CG
|
D:HIS92
|
4.3
|
42.0
|
1.0
|
C3D
|
D:HEM147
|
4.3
|
37.2
|
1.0
|
C2D
|
D:HEM147
|
4.3
|
35.4
|
1.0
|
C2C
|
D:HEM147
|
4.3
|
33.7
|
1.0
|
C3A
|
D:HEM147
|
4.3
|
35.0
|
1.0
|
C3C
|
D:HEM147
|
4.3
|
34.9
|
1.0
|
C2A
|
D:HEM147
|
4.3
|
34.6
|
1.0
|
C3B
|
D:HEM147
|
4.4
|
31.1
|
1.0
|
C2B
|
D:HEM147
|
4.4
|
32.9
|
1.0
|
CE1
|
D:HIS63
|
4.5
|
28.3
|
1.0
|
CG2
|
D:VAL67
|
4.7
|
30.1
|
1.0
|
|
Reference:
Pon.Sathya Moothy,
M.Thenmozhi,
M.Balasubramanian,
M.N.Ponnuswamy.
Crystal Structure Determination of Lepus Europaeus 2.8 A Resolution To Be Published.
Page generated: Sun Aug 4 14:32:40 2024
|