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Iron in PDB 3m28: Crystallographic and Single Crystal Spectral Analysis of the Peroxidase Ferryl Intermediate

Enzymatic activity of Crystallographic and Single Crystal Spectral Analysis of the Peroxidase Ferryl Intermediate

All present enzymatic activity of Crystallographic and Single Crystal Spectral Analysis of the Peroxidase Ferryl Intermediate:
1.11.1.5;

Protein crystallography data

The structure of Crystallographic and Single Crystal Spectral Analysis of the Peroxidase Ferryl Intermediate, PDB code: 3m28 was solved by Y.T.Meharenna, T.L.Poulos, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.40
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 107.101, 74.768, 50.928, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Iron Binding Sites:

The binding sites of Iron atom in the Crystallographic and Single Crystal Spectral Analysis of the Peroxidase Ferryl Intermediate (pdb code 3m28). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystallographic and Single Crystal Spectral Analysis of the Peroxidase Ferryl Intermediate, PDB code: 3m28:

Iron binding site 1 out of 1 in 3m28

Go back to Iron Binding Sites List in 3m28
Iron binding site 1 out of 1 in the Crystallographic and Single Crystal Spectral Analysis of the Peroxidase Ferryl Intermediate


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystallographic and Single Crystal Spectral Analysis of the Peroxidase Ferryl Intermediate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe296

b:11.8
occ:1.00
 FE A:HEM296 0.0 11.8 1.0
O A:HOH1040 1.8 11.9 1.0
ND A:HEM296 2.0 11.4 1.0
NC A:HEM296 2.0 10.4 1.0
NA A:HEM296 2.0 10.8 1.0
NB A:HEM296 2.0 10.5 1.0
NE2 A:HIS175 2.1 11.2 1.0
C4D A:HEM296 3.0 11.7 1.0
C1D A:HEM296 3.0 10.6 1.0
C1A A:HEM296 3.0 11.1 1.0
C4A A:HEM296 3.0 11.7 1.0
C4B A:HEM296 3.0 9.8 1.0
C1C A:HEM296 3.0 10.8 1.0
CE1 A:HIS175 3.1 10.8 1.0
C4C A:HEM296 3.1 10.6 1.0
C1B A:HEM296 3.1 12.1 1.0
CD2 A:HIS175 3.1 11.2 1.0
CHB A:HEM296 3.4 11.8 1.0
CHC A:HEM296 3.4 11.1 1.0
CHD A:HEM296 3.4 10.3 1.0
CHA A:HEM296 3.4 11.3 1.0
NE1 A:TRP51 3.9 11.3 1.0
NE A:ARG48 4.0 11.7 1.0
O A:HOH636 4.0 13.9 1.0
ND1 A:HIS175 4.2 10.8 1.0
C2A A:HEM296 4.2 11.5 1.0
CG A:HIS175 4.2 10.9 1.0
C3D A:HEM296 4.3 10.8 1.0
C2D A:HEM296 4.3 10.7 1.0
C2C A:HEM296 4.3 10.9 1.0
C3A A:HEM296 4.3 12.0 1.0
C2B A:HEM296 4.3 11.7 1.0
C3C A:HEM296 4.3 10.5 1.0
C3B A:HEM296 4.3 10.6 1.0
NH2 A:ARG48 4.4 14.0 1.0
CD1 A:TRP51 4.6 11.0 1.0
CZ A:ARG48 4.7 12.5 1.0
CG A:ARG48 4.8 12.5 1.0
CD A:ARG48 4.9 14.3 1.0
CE2 A:TRP51 4.9 11.2 1.0

Reference:

Y.T.Meharenna, T.Doukov, H.Li, S.M.Soltis, T.L.Poulos. Crystallographic and Single-Crystal Spectral Analysis of the Peroxidase Ferryl Intermediate. Biochemistry V. 49 2984 2010.
ISSN: ISSN 0006-2960
PubMed: 20230048
DOI: 10.1021/BI100238R
Page generated: Sun Aug 4 14:37:59 2024

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