Iron in PDB 3m79: A Tetrameric Zn-Bound Cytochrome CB562 Complex with Covalently and Non-Covalently Stabilized Interfaces Crystallized in the Presence of Cu(II) and Zn(II)
Protein crystallography data
The structure of A Tetrameric Zn-Bound Cytochrome CB562 Complex with Covalently and Non-Covalently Stabilized Interfaces Crystallized in the Presence of Cu(II) and Zn(II), PDB code: 3m79
was solved by
J.D.Brodin,
F.A.Tezcan,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
59.87 /
2.10
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
63.547,
78.068,
178.339,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
22.2 /
27.1
|
Other elements in 3m79:
The structure of A Tetrameric Zn-Bound Cytochrome CB562 Complex with Covalently and Non-Covalently Stabilized Interfaces Crystallized in the Presence of Cu(II) and Zn(II) also contains other interesting chemical elements:
Iron Binding Sites:
The binding sites of Iron atom in the A Tetrameric Zn-Bound Cytochrome CB562 Complex with Covalently and Non-Covalently Stabilized Interfaces Crystallized in the Presence of Cu(II) and Zn(II)
(pdb code 3m79). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the
A Tetrameric Zn-Bound Cytochrome CB562 Complex with Covalently and Non-Covalently Stabilized Interfaces Crystallized in the Presence of Cu(II) and Zn(II), PDB code: 3m79:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Iron binding site 1 out
of 8 in 3m79
Go back to
Iron Binding Sites List in 3m79
Iron binding site 1 out
of 8 in the A Tetrameric Zn-Bound Cytochrome CB562 Complex with Covalently and Non-Covalently Stabilized Interfaces Crystallized in the Presence of Cu(II) and Zn(II)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of A Tetrameric Zn-Bound Cytochrome CB562 Complex with Covalently and Non-Covalently Stabilized Interfaces Crystallized in the Presence of Cu(II) and Zn(II) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe150
b:14.1
occ:1.00
|
FE
|
A:HEM150
|
0.0
|
14.1
|
1.0
|
NC
|
A:HEM150
|
2.0
|
10.8
|
1.0
|
NA
|
A:HEM150
|
2.0
|
11.7
|
1.0
|
ND
|
A:HEM150
|
2.1
|
10.3
|
1.0
|
NB
|
A:HEM150
|
2.1
|
10.8
|
1.0
|
NE2
|
A:HIS102
|
2.1
|
20.5
|
1.0
|
SD
|
A:MET7
|
2.4
|
20.5
|
1.0
|
C1A
|
A:HEM150
|
3.0
|
14.1
|
1.0
|
C4C
|
A:HEM150
|
3.0
|
12.0
|
1.0
|
C1C
|
A:HEM150
|
3.1
|
12.1
|
1.0
|
C4A
|
A:HEM150
|
3.1
|
14.3
|
1.0
|
CD2
|
A:HIS102
|
3.1
|
19.7
|
1.0
|
C4D
|
A:HEM150
|
3.1
|
13.3
|
1.0
|
C1D
|
A:HEM150
|
3.1
|
11.7
|
1.0
|
C4B
|
A:HEM150
|
3.1
|
12.4
|
1.0
|
C1B
|
A:HEM150
|
3.1
|
12.3
|
1.0
|
CE1
|
A:HIS102
|
3.1
|
20.5
|
1.0
|
CG
|
A:MET7
|
3.4
|
21.7
|
1.0
|
CHD
|
A:HEM150
|
3.4
|
12.6
|
1.0
|
CHA
|
A:HEM150
|
3.4
|
12.9
|
1.0
|
CHC
|
A:HEM150
|
3.4
|
12.3
|
1.0
|
CHB
|
A:HEM150
|
3.4
|
13.0
|
1.0
|
CE
|
A:MET7
|
3.4
|
22.0
|
1.0
|
CB
|
A:MET7
|
4.1
|
22.8
|
1.0
|
ND1
|
A:HIS102
|
4.2
|
22.2
|
1.0
|
CG
|
A:HIS102
|
4.2
|
23.2
|
1.0
|
C2A
|
A:HEM150
|
4.3
|
15.7
|
1.0
|
C3C
|
A:HEM150
|
4.3
|
12.7
|
1.0
|
C2C
|
A:HEM150
|
4.3
|
12.4
|
1.0
|
C3A
|
A:HEM150
|
4.3
|
15.0
|
1.0
|
C2B
|
A:HEM150
|
4.3
|
11.5
|
1.0
|
C3B
|
A:HEM150
|
4.3
|
13.4
|
1.0
|
C3D
|
A:HEM150
|
4.3
|
14.1
|
1.0
|
C2D
|
A:HEM150
|
4.3
|
12.6
|
1.0
|
NH1
|
A:ARG106
|
4.7
|
31.3
|
1.0
|
CA
|
A:MET7
|
4.9
|
23.8
|
1.0
|
|
Iron binding site 2 out
of 8 in 3m79
Go back to
Iron Binding Sites List in 3m79
Iron binding site 2 out
of 8 in the A Tetrameric Zn-Bound Cytochrome CB562 Complex with Covalently and Non-Covalently Stabilized Interfaces Crystallized in the Presence of Cu(II) and Zn(II)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of A Tetrameric Zn-Bound Cytochrome CB562 Complex with Covalently and Non-Covalently Stabilized Interfaces Crystallized in the Presence of Cu(II) and Zn(II) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe150
b:16.9
occ:1.00
|
FE
|
B:HEM150
|
0.0
|
16.9
|
1.0
|
NE2
|
B:HIS102
|
2.0
|
17.5
|
1.0
|
NB
|
B:HEM150
|
2.0
|
16.5
|
1.0
|
NA
|
B:HEM150
|
2.0
|
16.9
|
1.0
|
NC
|
B:HEM150
|
2.1
|
16.9
|
1.0
|
ND
|
B:HEM150
|
2.1
|
17.8
|
1.0
|
SD
|
B:MET7
|
2.3
|
21.1
|
1.0
|
CD2
|
B:HIS102
|
3.0
|
19.1
|
1.0
|
CE1
|
B:HIS102
|
3.0
|
16.8
|
1.0
|
C4B
|
B:HEM150
|
3.0
|
17.1
|
1.0
|
C1A
|
B:HEM150
|
3.0
|
18.9
|
1.0
|
C1B
|
B:HEM150
|
3.0
|
17.0
|
1.0
|
C4A
|
B:HEM150
|
3.0
|
19.1
|
1.0
|
C1C
|
B:HEM150
|
3.1
|
16.7
|
1.0
|
C4D
|
B:HEM150
|
3.1
|
18.9
|
1.0
|
C4C
|
B:HEM150
|
3.1
|
18.7
|
1.0
|
C1D
|
B:HEM150
|
3.1
|
19.1
|
1.0
|
CHC
|
B:HEM150
|
3.4
|
17.3
|
1.0
|
CHA
|
B:HEM150
|
3.4
|
17.3
|
1.0
|
CHB
|
B:HEM150
|
3.4
|
17.9
|
1.0
|
CE
|
B:MET7
|
3.5
|
22.0
|
1.0
|
CHD
|
B:HEM150
|
3.5
|
17.7
|
1.0
|
CG
|
B:MET7
|
3.5
|
22.2
|
1.0
|
ND1
|
B:HIS102
|
4.1
|
19.6
|
1.0
|
CG
|
B:HIS102
|
4.1
|
21.5
|
1.0
|
CB
|
B:MET7
|
4.2
|
23.4
|
1.0
|
C3B
|
B:HEM150
|
4.3
|
18.4
|
1.0
|
C2A
|
B:HEM150
|
4.3
|
20.5
|
1.0
|
C2B
|
B:HEM150
|
4.3
|
17.4
|
1.0
|
C3A
|
B:HEM150
|
4.3
|
19.2
|
1.0
|
C2C
|
B:HEM150
|
4.3
|
18.3
|
1.0
|
C3C
|
B:HEM150
|
4.3
|
16.7
|
1.0
|
C3D
|
B:HEM150
|
4.4
|
21.2
|
1.0
|
C2D
|
B:HEM150
|
4.4
|
19.4
|
1.0
|
|
Iron binding site 3 out
of 8 in 3m79
Go back to
Iron Binding Sites List in 3m79
Iron binding site 3 out
of 8 in the A Tetrameric Zn-Bound Cytochrome CB562 Complex with Covalently and Non-Covalently Stabilized Interfaces Crystallized in the Presence of Cu(II) and Zn(II)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of A Tetrameric Zn-Bound Cytochrome CB562 Complex with Covalently and Non-Covalently Stabilized Interfaces Crystallized in the Presence of Cu(II) and Zn(II) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe150
b:38.3
occ:1.00
|
FE
|
C:HEM150
|
0.0
|
38.3
|
1.0
|
NE2
|
C:HIS102
|
2.0
|
28.0
|
1.0
|
ND
|
C:HEM150
|
2.0
|
39.4
|
1.0
|
NA
|
C:HEM150
|
2.1
|
40.5
|
1.0
|
NB
|
C:HEM150
|
2.1
|
39.7
|
1.0
|
NC
|
C:HEM150
|
2.1
|
39.1
|
1.0
|
SD
|
C:MET7
|
2.3
|
30.8
|
1.0
|
CE1
|
C:HIS102
|
3.0
|
25.8
|
1.0
|
CD2
|
C:HIS102
|
3.0
|
25.9
|
1.0
|
C4D
|
C:HEM150
|
3.0
|
40.6
|
1.0
|
C1A
|
C:HEM150
|
3.0
|
41.2
|
1.0
|
C1D
|
C:HEM150
|
3.1
|
40.5
|
1.0
|
C4B
|
C:HEM150
|
3.1
|
38.7
|
1.0
|
C4A
|
C:HEM150
|
3.1
|
41.4
|
1.0
|
C1B
|
C:HEM150
|
3.1
|
40.0
|
1.0
|
C1C
|
C:HEM150
|
3.1
|
38.4
|
1.0
|
C4C
|
C:HEM150
|
3.1
|
38.4
|
1.0
|
CHA
|
C:HEM150
|
3.4
|
40.9
|
1.0
|
CE
|
C:MET7
|
3.4
|
27.8
|
1.0
|
CG
|
C:MET7
|
3.4
|
26.4
|
1.0
|
CHD
|
C:HEM150
|
3.4
|
39.5
|
1.0
|
CHC
|
C:HEM150
|
3.5
|
38.5
|
1.0
|
CHB
|
C:HEM150
|
3.5
|
40.2
|
1.0
|
ND1
|
C:HIS102
|
4.1
|
25.3
|
1.0
|
CB
|
C:MET7
|
4.1
|
24.9
|
1.0
|
CG
|
C:HIS102
|
4.1
|
25.2
|
1.0
|
C2A
|
C:HEM150
|
4.3
|
42.3
|
1.0
|
C3A
|
C:HEM150
|
4.3
|
41.7
|
1.0
|
C3D
|
C:HEM150
|
4.3
|
41.1
|
1.0
|
C2B
|
C:HEM150
|
4.3
|
38.7
|
1.0
|
C3B
|
C:HEM150
|
4.3
|
38.5
|
1.0
|
C2D
|
C:HEM150
|
4.3
|
40.9
|
1.0
|
C2C
|
C:HEM150
|
4.3
|
38.4
|
1.0
|
C3C
|
C:HEM150
|
4.3
|
37.9
|
1.0
|
CA
|
C:MET7
|
5.0
|
24.2
|
1.0
|
|
Iron binding site 4 out
of 8 in 3m79
Go back to
Iron Binding Sites List in 3m79
Iron binding site 4 out
of 8 in the A Tetrameric Zn-Bound Cytochrome CB562 Complex with Covalently and Non-Covalently Stabilized Interfaces Crystallized in the Presence of Cu(II) and Zn(II)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of A Tetrameric Zn-Bound Cytochrome CB562 Complex with Covalently and Non-Covalently Stabilized Interfaces Crystallized in the Presence of Cu(II) and Zn(II) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe150
b:20.9
occ:1.00
|
FE
|
D:HEM150
|
0.0
|
20.9
|
1.0
|
NE2
|
D:HIS102
|
2.0
|
21.8
|
1.0
|
NB
|
D:HEM150
|
2.0
|
21.9
|
1.0
|
ND
|
D:HEM150
|
2.1
|
21.7
|
1.0
|
NC
|
D:HEM150
|
2.1
|
20.8
|
1.0
|
NA
|
D:HEM150
|
2.1
|
23.1
|
1.0
|
SD
|
D:MET7
|
2.3
|
25.4
|
1.0
|
CE1
|
D:HIS102
|
3.0
|
22.2
|
1.0
|
CD2
|
D:HIS102
|
3.0
|
21.3
|
1.0
|
C4B
|
D:HEM150
|
3.1
|
21.7
|
1.0
|
C1D
|
D:HEM150
|
3.1
|
22.4
|
1.0
|
C1B
|
D:HEM150
|
3.1
|
23.2
|
1.0
|
C1C
|
D:HEM150
|
3.1
|
20.5
|
1.0
|
C4C
|
D:HEM150
|
3.1
|
20.1
|
1.0
|
C4A
|
D:HEM150
|
3.1
|
23.4
|
1.0
|
C4D
|
D:HEM150
|
3.1
|
23.3
|
1.0
|
C1A
|
D:HEM150
|
3.1
|
24.1
|
1.0
|
CE
|
D:MET7
|
3.2
|
25.7
|
1.0
|
CHD
|
D:HEM150
|
3.4
|
21.9
|
1.0
|
CHC
|
D:HEM150
|
3.4
|
21.3
|
1.0
|
CG
|
D:MET7
|
3.4
|
24.7
|
1.0
|
CHB
|
D:HEM150
|
3.4
|
23.5
|
1.0
|
CHA
|
D:HEM150
|
3.5
|
23.3
|
1.0
|
ND1
|
D:HIS102
|
4.1
|
22.1
|
1.0
|
CG
|
D:HIS102
|
4.1
|
23.0
|
1.0
|
CB
|
D:MET7
|
4.2
|
24.3
|
1.0
|
C3B
|
D:HEM150
|
4.3
|
22.9
|
1.0
|
C2B
|
D:HEM150
|
4.3
|
21.6
|
1.0
|
C2D
|
D:HEM150
|
4.3
|
22.6
|
1.0
|
C2C
|
D:HEM150
|
4.3
|
19.2
|
1.0
|
C3C
|
D:HEM150
|
4.3
|
20.0
|
1.0
|
C3A
|
D:HEM150
|
4.3
|
24.4
|
1.0
|
C3D
|
D:HEM150
|
4.3
|
23.0
|
1.0
|
C2A
|
D:HEM150
|
4.3
|
24.6
|
1.0
|
CA
|
D:MET7
|
5.0
|
24.0
|
1.0
|
|
Iron binding site 5 out
of 8 in 3m79
Go back to
Iron Binding Sites List in 3m79
Iron binding site 5 out
of 8 in the A Tetrameric Zn-Bound Cytochrome CB562 Complex with Covalently and Non-Covalently Stabilized Interfaces Crystallized in the Presence of Cu(II) and Zn(II)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of A Tetrameric Zn-Bound Cytochrome CB562 Complex with Covalently and Non-Covalently Stabilized Interfaces Crystallized in the Presence of Cu(II) and Zn(II) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe150
b:12.2
occ:1.00
|
FE
|
E:HEM150
|
0.0
|
12.2
|
1.0
|
NA
|
E:HEM150
|
2.0
|
10.9
|
1.0
|
NE2
|
E:HIS102
|
2.0
|
18.8
|
1.0
|
NC
|
E:HEM150
|
2.0
|
9.7
|
1.0
|
ND
|
E:HEM150
|
2.1
|
9.7
|
1.0
|
NB
|
E:HEM150
|
2.1
|
9.8
|
1.0
|
SD
|
E:MET7
|
2.3
|
18.5
|
1.0
|
C1A
|
E:HEM150
|
2.9
|
12.5
|
1.0
|
CD2
|
E:HIS102
|
3.0
|
21.2
|
1.0
|
CE1
|
E:HIS102
|
3.0
|
22.0
|
1.0
|
C4A
|
E:HEM150
|
3.0
|
13.4
|
1.0
|
C4D
|
E:HEM150
|
3.1
|
12.8
|
1.0
|
C4C
|
E:HEM150
|
3.1
|
10.8
|
1.0
|
C1C
|
E:HEM150
|
3.1
|
10.8
|
1.0
|
C1D
|
E:HEM150
|
3.1
|
10.6
|
1.0
|
C4B
|
E:HEM150
|
3.1
|
12.2
|
1.0
|
C1B
|
E:HEM150
|
3.1
|
10.9
|
1.0
|
CHA
|
E:HEM150
|
3.3
|
11.5
|
1.0
|
CHC
|
E:HEM150
|
3.5
|
10.1
|
1.0
|
CHD
|
E:HEM150
|
3.5
|
10.8
|
1.0
|
CHB
|
E:HEM150
|
3.5
|
12.8
|
1.0
|
CG
|
E:MET7
|
3.5
|
22.2
|
1.0
|
CE
|
E:MET7
|
3.6
|
22.4
|
1.0
|
ND1
|
E:HIS102
|
4.1
|
22.4
|
1.0
|
CG
|
E:HIS102
|
4.1
|
23.0
|
1.0
|
CB
|
E:MET7
|
4.2
|
23.5
|
1.0
|
C2A
|
E:HEM150
|
4.2
|
14.7
|
1.0
|
C3A
|
E:HEM150
|
4.2
|
14.0
|
1.0
|
C3C
|
E:HEM150
|
4.3
|
11.5
|
1.0
|
C2C
|
E:HEM150
|
4.3
|
11.5
|
1.0
|
C3D
|
E:HEM150
|
4.3
|
12.3
|
1.0
|
C2D
|
E:HEM150
|
4.3
|
11.4
|
1.0
|
C2B
|
E:HEM150
|
4.4
|
12.8
|
1.0
|
C3B
|
E:HEM150
|
4.4
|
13.4
|
1.0
|
NH1
|
E:ARG106
|
4.8
|
22.7
|
1.0
|
|
Iron binding site 6 out
of 8 in 3m79
Go back to
Iron Binding Sites List in 3m79
Iron binding site 6 out
of 8 in the A Tetrameric Zn-Bound Cytochrome CB562 Complex with Covalently and Non-Covalently Stabilized Interfaces Crystallized in the Presence of Cu(II) and Zn(II)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of A Tetrameric Zn-Bound Cytochrome CB562 Complex with Covalently and Non-Covalently Stabilized Interfaces Crystallized in the Presence of Cu(II) and Zn(II) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Fe150
b:17.1
occ:1.00
|
FE
|
F:HEM150
|
0.0
|
17.1
|
1.0
|
NE2
|
F:HIS102
|
2.0
|
18.7
|
1.0
|
NA
|
F:HEM150
|
2.0
|
17.7
|
1.0
|
ND
|
F:HEM150
|
2.1
|
15.7
|
1.0
|
NB
|
F:HEM150
|
2.1
|
15.4
|
1.0
|
NC
|
F:HEM150
|
2.1
|
16.4
|
1.0
|
SD
|
F:MET7
|
2.3
|
20.2
|
1.0
|
CE1
|
F:HIS102
|
2.9
|
18.7
|
1.0
|
C1A
|
F:HEM150
|
3.0
|
17.8
|
1.0
|
CD2
|
F:HIS102
|
3.0
|
18.9
|
1.0
|
C4D
|
F:HEM150
|
3.0
|
17.1
|
1.0
|
C1C
|
F:HEM150
|
3.1
|
15.4
|
1.0
|
C4A
|
F:HEM150
|
3.1
|
17.9
|
1.0
|
C4B
|
F:HEM150
|
3.1
|
16.1
|
1.0
|
C1D
|
F:HEM150
|
3.1
|
15.3
|
1.0
|
C4C
|
F:HEM150
|
3.1
|
15.8
|
1.0
|
C1B
|
F:HEM150
|
3.1
|
16.4
|
1.0
|
CHA
|
F:HEM150
|
3.4
|
17.2
|
1.0
|
CHC
|
F:HEM150
|
3.4
|
16.6
|
1.0
|
CG
|
F:MET7
|
3.4
|
22.9
|
1.0
|
CE
|
F:MET7
|
3.5
|
22.1
|
1.0
|
CHD
|
F:HEM150
|
3.5
|
16.4
|
1.0
|
CHB
|
F:HEM150
|
3.5
|
17.3
|
1.0
|
ND1
|
F:HIS102
|
4.0
|
20.4
|
1.0
|
CG
|
F:HIS102
|
4.1
|
22.1
|
1.0
|
CB
|
F:MET7
|
4.2
|
23.2
|
1.0
|
C2A
|
F:HEM150
|
4.2
|
19.8
|
1.0
|
C3A
|
F:HEM150
|
4.3
|
19.3
|
1.0
|
C2C
|
F:HEM150
|
4.3
|
15.1
|
1.0
|
C3D
|
F:HEM150
|
4.3
|
16.9
|
1.0
|
C2D
|
F:HEM150
|
4.3
|
15.9
|
1.0
|
C3C
|
F:HEM150
|
4.3
|
16.3
|
1.0
|
C3B
|
F:HEM150
|
4.3
|
17.5
|
1.0
|
C2B
|
F:HEM150
|
4.3
|
16.4
|
1.0
|
CA
|
F:MET7
|
5.0
|
23.9
|
1.0
|
|
Iron binding site 7 out
of 8 in 3m79
Go back to
Iron Binding Sites List in 3m79
Iron binding site 7 out
of 8 in the A Tetrameric Zn-Bound Cytochrome CB562 Complex with Covalently and Non-Covalently Stabilized Interfaces Crystallized in the Presence of Cu(II) and Zn(II)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of A Tetrameric Zn-Bound Cytochrome CB562 Complex with Covalently and Non-Covalently Stabilized Interfaces Crystallized in the Presence of Cu(II) and Zn(II) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Fe150
b:25.8
occ:1.00
|
FE
|
G:HEM150
|
0.0
|
25.8
|
1.0
|
NE2
|
G:HIS102
|
2.0
|
23.4
|
1.0
|
ND
|
G:HEM150
|
2.1
|
27.8
|
1.0
|
NC
|
G:HEM150
|
2.1
|
27.5
|
1.0
|
NA
|
G:HEM150
|
2.1
|
28.4
|
1.0
|
NB
|
G:HEM150
|
2.1
|
27.0
|
1.0
|
SD
|
G:MET7
|
2.3
|
25.9
|
1.0
|
CD2
|
G:HIS102
|
2.9
|
23.3
|
1.0
|
CE1
|
G:HIS102
|
3.0
|
22.9
|
1.0
|
C4C
|
G:HEM150
|
3.1
|
27.2
|
1.0
|
C4D
|
G:HEM150
|
3.1
|
29.0
|
1.0
|
C1D
|
G:HEM150
|
3.1
|
28.1
|
1.0
|
C1A
|
G:HEM150
|
3.1
|
28.6
|
1.0
|
C1C
|
G:HEM150
|
3.1
|
26.9
|
1.0
|
C4A
|
G:HEM150
|
3.1
|
28.1
|
1.0
|
C1B
|
G:HEM150
|
3.1
|
27.0
|
1.0
|
C4B
|
G:HEM150
|
3.1
|
26.3
|
1.0
|
CHA
|
G:HEM150
|
3.4
|
28.4
|
1.0
|
CHD
|
G:HEM150
|
3.4
|
27.6
|
1.0
|
CHB
|
G:HEM150
|
3.5
|
27.6
|
1.0
|
CHC
|
G:HEM150
|
3.5
|
26.5
|
1.0
|
CG
|
G:MET7
|
3.5
|
23.9
|
1.0
|
CE
|
G:MET7
|
3.5
|
23.7
|
1.0
|
CG
|
G:HIS102
|
4.1
|
23.8
|
1.0
|
ND1
|
G:HIS102
|
4.1
|
22.3
|
1.0
|
CB
|
G:MET7
|
4.2
|
24.1
|
1.0
|
C3C
|
G:HEM150
|
4.3
|
27.3
|
1.0
|
C3D
|
G:HEM150
|
4.3
|
28.9
|
1.0
|
C2D
|
G:HEM150
|
4.3
|
28.3
|
1.0
|
C2C
|
G:HEM150
|
4.3
|
27.4
|
1.0
|
C2A
|
G:HEM150
|
4.3
|
29.3
|
1.0
|
C3A
|
G:HEM150
|
4.3
|
28.8
|
1.0
|
C2B
|
G:HEM150
|
4.3
|
27.4
|
1.0
|
C3B
|
G:HEM150
|
4.3
|
26.9
|
1.0
|
|
Iron binding site 8 out
of 8 in 3m79
Go back to
Iron Binding Sites List in 3m79
Iron binding site 8 out
of 8 in the A Tetrameric Zn-Bound Cytochrome CB562 Complex with Covalently and Non-Covalently Stabilized Interfaces Crystallized in the Presence of Cu(II) and Zn(II)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of A Tetrameric Zn-Bound Cytochrome CB562 Complex with Covalently and Non-Covalently Stabilized Interfaces Crystallized in the Presence of Cu(II) and Zn(II) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Fe150
b:25.8
occ:1.00
|
FE
|
H:HEM150
|
0.0
|
25.8
|
1.0
|
NE2
|
H:HIS102
|
2.0
|
23.7
|
1.0
|
NA
|
H:HEM150
|
2.0
|
28.6
|
1.0
|
NB
|
H:HEM150
|
2.1
|
26.9
|
1.0
|
ND
|
H:HEM150
|
2.1
|
27.7
|
1.0
|
NC
|
H:HEM150
|
2.1
|
26.9
|
1.0
|
SD
|
H:MET7
|
2.3
|
25.7
|
1.0
|
CD2
|
H:HIS102
|
2.9
|
24.4
|
1.0
|
CE1
|
H:HIS102
|
3.0
|
23.6
|
1.0
|
C1A
|
H:HEM150
|
3.0
|
30.2
|
1.0
|
C4A
|
H:HEM150
|
3.0
|
29.6
|
1.0
|
C4B
|
H:HEM150
|
3.1
|
26.6
|
1.0
|
C1B
|
H:HEM150
|
3.1
|
28.0
|
1.0
|
C4D
|
H:HEM150
|
3.1
|
28.0
|
1.0
|
C1C
|
H:HEM150
|
3.1
|
26.2
|
1.0
|
C1D
|
H:HEM150
|
3.1
|
27.9
|
1.0
|
C4C
|
H:HEM150
|
3.1
|
27.1
|
1.0
|
CHA
|
H:HEM150
|
3.4
|
28.8
|
1.0
|
CE
|
H:MET7
|
3.4
|
25.4
|
1.0
|
CHB
|
H:HEM150
|
3.4
|
28.9
|
1.0
|
CHC
|
H:HEM150
|
3.4
|
26.9
|
1.0
|
CG
|
H:MET7
|
3.5
|
24.2
|
1.0
|
CHD
|
H:HEM150
|
3.5
|
27.1
|
1.0
|
ND1
|
H:HIS102
|
4.1
|
24.2
|
1.0
|
CG
|
H:HIS102
|
4.1
|
24.8
|
1.0
|
CB
|
H:MET7
|
4.2
|
24.5
|
1.0
|
C2A
|
H:HEM150
|
4.2
|
31.1
|
1.0
|
C3A
|
H:HEM150
|
4.2
|
30.0
|
1.0
|
C3B
|
H:HEM150
|
4.3
|
27.4
|
1.0
|
C2B
|
H:HEM150
|
4.3
|
27.6
|
1.0
|
C2C
|
H:HEM150
|
4.3
|
26.1
|
1.0
|
C3D
|
H:HEM150
|
4.3
|
28.9
|
1.0
|
C3C
|
H:HEM150
|
4.4
|
25.4
|
1.0
|
C2D
|
H:HEM150
|
4.4
|
27.2
|
1.0
|
NH2
|
H:ARG106
|
4.9
|
33.7
|
1.0
|
|
Reference:
J.D.Brodin,
A.Medina-Morales,
T.Ni,
E.N.Salgado,
X.I.Ambroggio,
F.A.Tezcan.
Evolution of Metal Selectivity in Templated Protein Interfaces. J.Am.Chem.Soc. V. 132 8610 2010.
ISSN: ISSN 0002-7863
PubMed: 20515031
DOI: 10.1021/JA910844N
Page generated: Sun Aug 4 14:43:54 2024
|