Iron in PDB 3mol: Structure of Dimeric Holo Hasap H32A Mutant From Pseudomonas Aeruginosa to 1.20A Resolution
Protein crystallography data
The structure of Structure of Dimeric Holo Hasap H32A Mutant From Pseudomonas Aeruginosa to 1.20A Resolution, PDB code: 3mol
was solved by
S.Lovell,
K.P.Battaile,
G.Jepkorir,
J.C.Rodriguez,
H.Rui,
W.Im,
A.Y.Alontaga,
E.Yukl,
P.Moenne-Loccoz,
M.Rivera,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
19.25 /
1.20
|
Space group
|
I 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
71.740,
52.700,
85.714,
90.00,
91.48,
90.00
|
R / Rfree (%)
|
17.7 /
19.7
|
Iron Binding Sites:
The binding sites of Iron atom in the Structure of Dimeric Holo Hasap H32A Mutant From Pseudomonas Aeruginosa to 1.20A Resolution
(pdb code 3mol). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the
Structure of Dimeric Holo Hasap H32A Mutant From Pseudomonas Aeruginosa to 1.20A Resolution, PDB code: 3mol:
Jump to Iron binding site number:
1;
2;
Iron binding site 1 out
of 2 in 3mol
Go back to
Iron Binding Sites List in 3mol
Iron binding site 1 out
of 2 in the Structure of Dimeric Holo Hasap H32A Mutant From Pseudomonas Aeruginosa to 1.20A Resolution
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Structure of Dimeric Holo Hasap H32A Mutant From Pseudomonas Aeruginosa to 1.20A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe185
b:15.2
occ:1.00
|
FE
|
A:HEM185
|
0.0
|
15.2
|
1.0
|
NB
|
A:HEM185
|
2.0
|
17.6
|
1.0
|
OH
|
A:TYR75
|
2.0
|
13.9
|
1.0
|
ND
|
A:HEM185
|
2.1
|
16.3
|
1.0
|
NA
|
A:HEM185
|
2.1
|
15.3
|
1.0
|
NC
|
A:HEM185
|
2.1
|
14.0
|
1.0
|
CZ
|
A:TYR75
|
3.0
|
13.4
|
1.0
|
C1B
|
A:HEM185
|
3.0
|
19.1
|
1.0
|
C4B
|
A:HEM185
|
3.0
|
14.3
|
1.0
|
C4A
|
A:HEM185
|
3.0
|
19.2
|
1.0
|
C1D
|
A:HEM185
|
3.1
|
15.8
|
1.0
|
C4C
|
A:HEM185
|
3.1
|
14.4
|
1.0
|
C1C
|
A:HEM185
|
3.1
|
15.6
|
1.0
|
C1A
|
A:HEM185
|
3.1
|
15.9
|
1.0
|
C4D
|
A:HEM185
|
3.1
|
14.2
|
1.0
|
CHB
|
A:HEM185
|
3.3
|
14.9
|
1.0
|
CHD
|
A:HEM185
|
3.4
|
13.7
|
1.0
|
CHC
|
A:HEM185
|
3.4
|
16.8
|
1.0
|
CHA
|
A:HEM185
|
3.5
|
16.9
|
1.0
|
CHB
|
B:HEM185
|
3.7
|
18.2
|
1.0
|
CE1
|
A:TYR75
|
3.7
|
14.2
|
1.0
|
CE2
|
A:TYR75
|
3.8
|
13.0
|
1.0
|
ND1
|
A:HIS83
|
3.9
|
15.5
|
1.0
|
C4A
|
B:HEM185
|
3.9
|
17.5
|
1.0
|
C1B
|
B:HEM185
|
4.1
|
17.4
|
1.0
|
C3A
|
B:HEM185
|
4.1
|
19.9
|
1.0
|
C2B
|
A:HEM185
|
4.2
|
18.5
|
1.0
|
C3B
|
A:HEM185
|
4.2
|
18.4
|
1.0
|
C3A
|
A:HEM185
|
4.3
|
14.6
|
1.0
|
C2D
|
A:HEM185
|
4.3
|
16.7
|
1.0
|
C3C
|
A:HEM185
|
4.3
|
14.6
|
1.0
|
CMA
|
B:HEM185
|
4.3
|
21.6
|
1.0
|
C2A
|
A:HEM185
|
4.3
|
17.4
|
1.0
|
C2C
|
A:HEM185
|
4.3
|
15.4
|
1.0
|
C3D
|
A:HEM185
|
4.3
|
17.7
|
1.0
|
NA
|
B:HEM185
|
4.5
|
21.2
|
1.0
|
CG
|
A:HIS83
|
4.6
|
17.4
|
1.0
|
CB
|
A:HIS83
|
4.6
|
14.9
|
1.0
|
C2B
|
B:HEM185
|
4.7
|
16.5
|
1.0
|
CE1
|
A:HIS83
|
4.7
|
15.6
|
1.0
|
NB
|
B:HEM185
|
4.7
|
17.3
|
1.0
|
C2A
|
B:HEM185
|
4.9
|
17.2
|
1.0
|
CD1
|
A:TYR75
|
4.9
|
12.9
|
1.0
|
CMB
|
B:HEM185
|
4.9
|
18.3
|
1.0
|
CD2
|
A:TYR75
|
5.0
|
15.0
|
1.0
|
|
Iron binding site 2 out
of 2 in 3mol
Go back to
Iron Binding Sites List in 3mol
Iron binding site 2 out
of 2 in the Structure of Dimeric Holo Hasap H32A Mutant From Pseudomonas Aeruginosa to 1.20A Resolution
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Structure of Dimeric Holo Hasap H32A Mutant From Pseudomonas Aeruginosa to 1.20A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe185
b:18.0
occ:1.00
|
FE
|
B:HEM185
|
0.0
|
18.0
|
1.0
|
OH
|
B:TYR75
|
2.0
|
16.1
|
1.0
|
NB
|
B:HEM185
|
2.0
|
17.3
|
1.0
|
NA
|
B:HEM185
|
2.1
|
21.2
|
1.0
|
ND
|
B:HEM185
|
2.1
|
21.0
|
1.0
|
NC
|
B:HEM185
|
2.1
|
18.3
|
1.0
|
CZ
|
B:TYR75
|
2.9
|
14.2
|
1.0
|
C1B
|
B:HEM185
|
3.0
|
17.4
|
1.0
|
C4B
|
B:HEM185
|
3.0
|
16.0
|
1.0
|
C4A
|
B:HEM185
|
3.1
|
17.5
|
1.0
|
C1D
|
B:HEM185
|
3.1
|
20.6
|
1.0
|
C4D
|
B:HEM185
|
3.1
|
19.4
|
1.0
|
C1C
|
B:HEM185
|
3.1
|
18.9
|
1.0
|
C1A
|
B:HEM185
|
3.1
|
18.9
|
1.0
|
C4C
|
B:HEM185
|
3.1
|
19.2
|
1.0
|
CHB
|
B:HEM185
|
3.4
|
18.2
|
1.0
|
CHC
|
B:HEM185
|
3.4
|
17.4
|
1.0
|
CHD
|
B:HEM185
|
3.4
|
18.3
|
1.0
|
CHA
|
B:HEM185
|
3.5
|
19.5
|
1.0
|
C3A
|
A:HEM185
|
3.6
|
14.6
|
1.0
|
CE2
|
B:TYR75
|
3.7
|
12.9
|
1.0
|
C2A
|
A:HEM185
|
3.7
|
17.4
|
1.0
|
CE1
|
B:TYR75
|
3.7
|
14.6
|
1.0
|
C4A
|
A:HEM185
|
3.8
|
19.2
|
1.0
|
CD2
|
B:HIS83
|
3.8
|
11.6
|
1.0
|
CMA
|
A:HEM185
|
4.0
|
21.6
|
1.0
|
C1A
|
A:HEM185
|
4.1
|
15.9
|
1.0
|
NA
|
A:HEM185
|
4.1
|
15.3
|
1.0
|
C3B
|
B:HEM185
|
4.2
|
15.8
|
1.0
|
C2B
|
B:HEM185
|
4.2
|
16.5
|
1.0
|
C2D
|
B:HEM185
|
4.3
|
20.5
|
1.0
|
C3A
|
B:HEM185
|
4.3
|
19.9
|
1.0
|
CAA
|
A:HEM185
|
4.3
|
18.6
|
1.0
|
C2A
|
B:HEM185
|
4.3
|
17.2
|
1.0
|
C3D
|
B:HEM185
|
4.3
|
19.1
|
1.0
|
C2C
|
B:HEM185
|
4.3
|
20.7
|
1.0
|
C3C
|
B:HEM185
|
4.3
|
18.3
|
1.0
|
CHB
|
A:HEM185
|
4.4
|
14.9
|
1.0
|
CG
|
B:HIS83
|
4.5
|
13.5
|
1.0
|
CB
|
B:HIS83
|
4.7
|
16.2
|
1.0
|
NE2
|
B:HIS83
|
4.7
|
16.3
|
1.0
|
CHA
|
A:HEM185
|
4.8
|
16.9
|
1.0
|
CD2
|
B:TYR75
|
4.9
|
13.5
|
1.0
|
CD1
|
B:TYR75
|
4.9
|
13.1
|
1.0
|
|
Reference:
G.Jepkorir,
J.C.Rodriguez,
H.Rui,
W.Im,
S.Lovell,
K.P.Battaile,
A.Y.Alontaga,
E.T.Yukl,
M.Rivera.
Structural, uc(Nmr) Spectroscopic, and Computational Investigation of Hemin Loading in the Hemophore Hasap From Pseudomonas Aeruginosa. J.Am.Chem.Soc. V. 132 9857 2010.
ISSN: ISSN 0002-7863
PubMed: 20572666
DOI: 10.1021/JA103498Z
Page generated: Sun Aug 4 15:40:17 2024
|