Atomistry » Iron » PDB 3mmb-3n5r » 3mou
Atomistry »
  Iron »
    PDB 3mmb-3n5r »
      3mou »

Iron in PDB 3mou: Characterization of the Inhibitor Binding Site of the Dehaloperoxidase-Hemoglobin From Amphitrite Ornata Using High- Pressure Xenon Derivatization

Protein crystallography data

The structure of Characterization of the Inhibitor Binding Site of the Dehaloperoxidase-Hemoglobin From Amphitrite Ornata Using High- Pressure Xenon Derivatization, PDB code: 3mou was solved by V.S.De Serrano, S.Franzen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.51 / 1.71
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 57.945, 67.708, 68.359, 90.00, 90.00, 90.00
R / Rfree (%) 19.6 / 23

Other elements in 3mou:

The structure of Characterization of the Inhibitor Binding Site of the Dehaloperoxidase-Hemoglobin From Amphitrite Ornata Using High- Pressure Xenon Derivatization also contains other interesting chemical elements:

Xenon (Xe) 4 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Characterization of the Inhibitor Binding Site of the Dehaloperoxidase-Hemoglobin From Amphitrite Ornata Using High- Pressure Xenon Derivatization (pdb code 3mou). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Characterization of the Inhibitor Binding Site of the Dehaloperoxidase-Hemoglobin From Amphitrite Ornata Using High- Pressure Xenon Derivatization, PDB code: 3mou:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 3mou

Go back to Iron Binding Sites List in 3mou
Iron binding site 1 out of 2 in the Characterization of the Inhibitor Binding Site of the Dehaloperoxidase-Hemoglobin From Amphitrite Ornata Using High- Pressure Xenon Derivatization


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Characterization of the Inhibitor Binding Site of the Dehaloperoxidase-Hemoglobin From Amphitrite Ornata Using High- Pressure Xenon Derivatization within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe139

b:12.6
occ:1.00
FE A:HEM139 0.0 12.6 1.0
O A:HOH834 2.0 11.8 0.7
NC A:HEM139 2.1 11.7 1.0
ND A:HEM139 2.1 13.8 1.0
NA A:HEM139 2.1 12.9 1.0
NB A:HEM139 2.1 10.7 1.0
NE2 A:HIS89 2.2 16.3 1.0
C1D A:HEM139 3.1 14.9 1.0
C4C A:HEM139 3.1 13.0 1.0
C1C A:HEM139 3.1 11.7 1.0
C4D A:HEM139 3.1 15.1 1.0
C4A A:HEM139 3.1 12.8 1.0
C1A A:HEM139 3.1 14.4 1.0
C1B A:HEM139 3.1 10.7 1.0
C4B A:HEM139 3.1 9.9 1.0
CE1 A:HIS89 3.2 16.5 1.0
CD2 A:HIS89 3.2 17.6 1.0
CHD A:HEM139 3.4 14.5 1.0
CHB A:HEM139 3.4 11.3 1.0
CHA A:HEM139 3.5 14.2 1.0
CHC A:HEM139 3.5 10.8 1.0
C3C A:HEM139 4.3 12.2 1.0
ND1 A:HIS89 4.3 17.3 1.0
C2C A:HEM139 4.3 10.9 1.0
C2D A:HEM139 4.3 15.8 1.0
C3A A:HEM139 4.3 13.7 1.0
C2A A:HEM139 4.3 15.1 1.0
C3D A:HEM139 4.3 17.1 1.0
C2B A:HEM139 4.3 9.5 1.0
CG A:HIS89 4.3 18.4 1.0
C3B A:HEM139 4.3 9.7 1.0
CG2 A:VAL59 4.4 11.0 1.0
XE A:XE181 4.8 13.1 0.4
CE A:MET86 4.9 17.9 0.6
CG1 A:VAL59 4.9 10.5 1.0
CE1 A:HIS55 5.0 13.9 0.1

Iron binding site 2 out of 2 in 3mou

Go back to Iron Binding Sites List in 3mou
Iron binding site 2 out of 2 in the Characterization of the Inhibitor Binding Site of the Dehaloperoxidase-Hemoglobin From Amphitrite Ornata Using High- Pressure Xenon Derivatization


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Characterization of the Inhibitor Binding Site of the Dehaloperoxidase-Hemoglobin From Amphitrite Ornata Using High- Pressure Xenon Derivatization within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe139

b:10.6
occ:1.00
FE B:HEM139 0.0 10.6 1.0
NA B:HEM139 2.0 10.3 1.0
O B:HOH835 2.1 7.8 0.7
NC B:HEM139 2.1 11.3 1.0
NB B:HEM139 2.1 10.0 1.0
ND B:HEM139 2.1 11.5 1.0
NE2 B:HIS89 2.2 10.5 1.0
C4A B:HEM139 3.0 9.8 1.0
C1A B:HEM139 3.1 11.8 1.0
C4C B:HEM139 3.1 11.7 1.0
C1C B:HEM139 3.1 10.5 1.0
C1D B:HEM139 3.1 13.3 1.0
C1B B:HEM139 3.1 9.4 1.0
C4B B:HEM139 3.1 10.1 1.0
C4D B:HEM139 3.1 13.4 1.0
CD2 B:HIS89 3.2 12.8 1.0
CE1 B:HIS89 3.2 12.6 1.0
CHD B:HEM139 3.4 12.3 1.0
CHB B:HEM139 3.4 9.6 1.0
CHA B:HEM139 3.5 11.2 1.0
CHC B:HEM139 3.5 9.9 1.0
C3A B:HEM139 4.3 10.7 1.0
C2A B:HEM139 4.3 12.2 1.0
C2C B:HEM139 4.3 11.1 1.0
C3C B:HEM139 4.3 12.0 1.0
ND1 B:HIS89 4.3 12.7 1.0
C2B B:HEM139 4.3 8.2 1.0
C3B B:HEM139 4.3 9.5 1.0
CG B:HIS89 4.3 13.2 1.0
C2D B:HEM139 4.3 14.5 1.0
C3D B:HEM139 4.4 14.4 1.0
CG2 B:VAL59 4.4 8.6 0.4
CG2 B:VAL59 4.5 9.0 0.6
NE2 B:HIS55 4.7 16.5 1.0
XE B:XE183 4.8 25.2 0.2
CE B:MET86 4.8 15.3 1.0
CG1 B:VAL59 4.9 7.6 0.6

Reference:

V.S.De Serrano, S.Franzen. Characterization of the Inhibitor Binding Site of the Dehaloperoxidase-Hemoglobin From Amphitrite Ornata Using High-Pressure Xenon Derivatization To Be Published.
Page generated: Sun Dec 13 15:12:50 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy