Atomistry » Iron » PDB 3na1-3nmj » 3niu
Atomistry »
  Iron »
    PDB 3na1-3nmj »
      3niu »

Iron in PDB 3niu: Crystal Structure of the Complex of Dimeric Goat Lactoperoxidase with Diethylene Glycol at 2.9 A Resolution

Enzymatic activity of Crystal Structure of the Complex of Dimeric Goat Lactoperoxidase with Diethylene Glycol at 2.9 A Resolution

All present enzymatic activity of Crystal Structure of the Complex of Dimeric Goat Lactoperoxidase with Diethylene Glycol at 2.9 A Resolution:
1.11.1.7;

Protein crystallography data

The structure of Crystal Structure of the Complex of Dimeric Goat Lactoperoxidase with Diethylene Glycol at 2.9 A Resolution, PDB code: 3niu was solved by G.Vikram, R.P.Singh, A.K.Singh, M.Sinha, P.Kaur, S.Sharma, T.P.Singh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 2.94
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 59.199, 75.587, 83.808, 79.93, 77.86, 72.50
R / Rfree (%) 19.7 / 23.2

Other elements in 3niu:

The structure of Crystal Structure of the Complex of Dimeric Goat Lactoperoxidase with Diethylene Glycol at 2.9 A Resolution also contains other interesting chemical elements:

Calcium (Ca) 2 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of the Complex of Dimeric Goat Lactoperoxidase with Diethylene Glycol at 2.9 A Resolution (pdb code 3niu). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of the Complex of Dimeric Goat Lactoperoxidase with Diethylene Glycol at 2.9 A Resolution, PDB code: 3niu:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 3niu

Go back to Iron Binding Sites List in 3niu
Iron binding site 1 out of 2 in the Crystal Structure of the Complex of Dimeric Goat Lactoperoxidase with Diethylene Glycol at 2.9 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of the Complex of Dimeric Goat Lactoperoxidase with Diethylene Glycol at 2.9 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1001

b:16.0
occ:1.00
FE A:HEM1001 0.0 16.0 1.0
NC A:HEM1001 2.1 16.0 1.0
NA A:HEM1001 2.1 16.1 1.0
ND A:HEM1001 2.1 16.0 1.0
NB A:HEM1001 2.1 15.7 1.0
NE2 A:HIS351 2.6 8.7 1.0
C1A A:HEM1001 3.0 16.0 1.0
C4D A:HEM1001 3.0 16.2 1.0
C1C A:HEM1001 3.1 15.9 1.0
C4C A:HEM1001 3.1 15.8 1.0
C4B A:HEM1001 3.1 15.6 1.0
C1D A:HEM1001 3.1 16.0 1.0
C4A A:HEM1001 3.1 16.0 1.0
C1B A:HEM1001 3.1 15.7 1.0
CHA A:HEM1001 3.4 16.1 1.0
CHC A:HEM1001 3.4 15.7 1.0
CHD A:HEM1001 3.4 16.0 1.0
O1 A:PEG5001 3.5 30.1 1.0
CHB A:HEM1001 3.5 16.0 1.0
CD2 A:HIS351 3.5 9.1 1.0
CE1 A:HIS351 3.6 8.9 1.0
NE2 A:GLN105 4.0 7.5 1.0
C2A A:HEM1001 4.3 16.2 1.0
C3D A:HEM1001 4.3 16.3 1.0
C2C A:HEM1001 4.3 15.9 1.0
C3C A:HEM1001 4.3 15.9 1.0
C2D A:HEM1001 4.3 16.2 1.0
C3A A:HEM1001 4.3 16.1 1.0
C3B A:HEM1001 4.3 15.7 1.0
C2B A:HEM1001 4.3 15.7 1.0
C1 A:PEG5001 4.4 30.5 1.0
CG A:GLN105 4.5 8.0 1.0
NE2 A:HIS109 4.6 7.4 1.0
CD A:GLN105 4.6 8.1 1.0
ND1 A:HIS351 4.7 8.9 1.0
CG A:HIS351 4.7 9.1 1.0

Iron binding site 2 out of 2 in 3niu

Go back to Iron Binding Sites List in 3niu
Iron binding site 2 out of 2 in the Crystal Structure of the Complex of Dimeric Goat Lactoperoxidase with Diethylene Glycol at 2.9 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of the Complex of Dimeric Goat Lactoperoxidase with Diethylene Glycol at 2.9 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe1021

b:14.5
occ:1.00
FE B:HEM1021 0.0 14.5 1.0
NC B:HEM1021 2.0 13.9 1.0
ND B:HEM1021 2.1 14.3 1.0
NB B:HEM1021 2.1 14.1 1.0
NA B:HEM1021 2.1 14.3 1.0
NE2 B:HIS351 2.6 8.9 1.0
C4D B:HEM1021 3.0 14.5 1.0
C1C B:HEM1021 3.1 13.6 1.0
C4C B:HEM1021 3.1 13.7 1.0
C4B B:HEM1021 3.1 13.8 1.0
C1A B:HEM1021 3.1 14.3 1.0
C1D B:HEM1021 3.1 14.5 1.0
O1 B:PEG5001 3.1 31.2 1.0
C1B B:HEM1021 3.1 13.9 1.0
C4A B:HEM1021 3.1 14.2 1.0
CD2 B:HIS351 3.4 8.8 1.0
CHA B:HEM1021 3.4 14.5 1.0
CHC B:HEM1021 3.4 13.6 1.0
CHD B:HEM1021 3.4 14.2 1.0
CHB B:HEM1021 3.5 14.1 1.0
CE1 B:HIS351 3.7 9.0 1.0
C1 B:PEG5001 4.0 31.7 1.0
NE2 B:GLN105 4.2 8.5 1.0
C2C B:HEM1021 4.3 13.2 1.0
C3D B:HEM1021 4.3 14.7 1.0
C3C B:HEM1021 4.3 13.0 1.0
C2D B:HEM1021 4.3 14.6 1.0
C3B B:HEM1021 4.3 13.8 1.0
C2A B:HEM1021 4.3 14.4 1.0
C2B B:HEM1021 4.3 13.9 1.0
C3A B:HEM1021 4.3 14.2 1.0
CG B:HIS351 4.6 8.9 1.0
CG B:GLN105 4.7 8.5 1.0
CD B:GLN105 4.7 8.5 1.0
ND1 B:HIS351 4.7 8.7 1.0
C2 B:PEG5001 4.9 31.1 1.0

Reference:

G.Vikram, R.P.Singh, A.K.Singh, M.Sinha, P.Kaur, S.Sharma, T.P.Singh. Crystal Structure of the Complex of Dimeric Goat Lactoperoxidase with Diethylene Glycol at 2.9 A Resolution To Be Published.
Page generated: Sun Aug 4 16:27:39 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy