Iron in PDB 3obz: Crystal Structure of Human Phytanoyl-Coa Dioxygenase PHYHD1 2- Oxoglutarate and Iron Complex

The structure of Crystal Structure of Human Phytanoyl-Coa Dioxygenase PHYHD1 2- Oxoglutarate and Iron Complex, PDB code: 3obz was solved by Z.Zhang, M.A.Mcdonough, C.J.Schofield, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	24.31 / 2.15
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	92.366, 92.366, 81.754, 90.00, 90.00, 120.00
R / Rfree (%)	23.3 / 27.4

The binding sites of Iron atom in the Crystal Structure of Human Phytanoyl-Coa Dioxygenase PHYHD1 2- Oxoglutarate and Iron Complex (pdb code 3obz). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of Human Phytanoyl-Coa Dioxygenase PHYHD1 2- Oxoglutarate and Iron Complex, PDB code: 3obz:

Iron binding site 1 out of 1 in the Crystal Structure of Human Phytanoyl-Coa Dioxygenase PHYHD1 2- Oxoglutarate and Iron Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Human Phytanoyl-Coa Dioxygenase PHYHD1 2- Oxoglutarate and Iron Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe482 b:26.8 occ:1.00 O2 A:AKG481 2.1 30.9 1.0 NE2 A:HIS246 2.2 21.7 1.0 OD1 A:ASP158 2.2 20.9 1.0 O5 A:AKG481 2.3 26.2 1.0 NE2 A:HIS156 2.3 21.8 1.0 O A:HOH466 2.3 32.2 1.0 C1 A:AKG481 2.8 30.6 1.0 C2 A:AKG481 2.9 29.2 1.0 CE1 A:HIS246 2.9 18.6 1.0 CG A:ASP158 3.2 20.8 1.0 CE1 A:HIS156 3.2 21.6 1.0 CD2 A:HIS156 3.2 21.8 1.0 CD2 A:HIS246 3.3 24.6 1.0 OD2 A:ASP158 3.4 18.7 1.0 O1 A:AKG481 4.1 27.8 1.0 ND1 A:HIS246 4.1 19.6 1.0 CG A:HIS246 4.3 22.9 1.0 ND1 A:HIS156 4.3 21.8 1.0 O A:HOH467 4.4 46.3 1.0 CG A:HIS156 4.4 21.0 1.0 C3 A:AKG481 4.4 25.0 1.0 CB A:ASP158 4.6 22.2 1.0 CA A:ASP158 4.9 21.6 1.0 N A:ASP158 4.9 21.9 1.0

Z.Zhang, D.Butler, M.A.Mcdonough, K.L.Kavanagh, J.E.Bray, S.S.Ng, F.Von Delft, C.H.Arrowsmith, J.Weigelt, A.Edwards, M.Sundstrom, C.J.Schofield, U.Oppermann. Crystal Structure of Human PHYHD1, A Non-Heme Fe(II) and 2-Oxoglutarate Dependent Oxygenase Related to Phytanoyl-Coa Hydroxylase To Be Published.