Iron in PDB 3p9p: Structure of I274V Variant of E. Coli Kate
Enzymatic activity of Structure of I274V Variant of E. Coli Kate
All present enzymatic activity of Structure of I274V Variant of E. Coli Kate:
1.11.1.6;
Protein crystallography data
The structure of Structure of I274V Variant of E. Coli Kate, PDB code: 3p9p
was solved by
P.C.Loewen,
V.Jha,
S.Louis,
P.Chelikani,
X.Carpena,
I.Fita,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
29.16 /
1.50
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
93.500,
132.820,
122.590,
90.00,
109.47,
90.00
|
R / Rfree (%)
|
14.9 /
18.5
|
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
16;
Binding sites:
The binding sites of Iron atom in the Structure of I274V Variant of E. Coli Kate
(pdb code 3p9p). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 16 binding sites of Iron where determined in the
Structure of I274V Variant of E. Coli Kate, PDB code: 3p9p:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 16 in 3p9p
Go back to
Iron Binding Sites List in 3p9p
Iron binding site 1 out
of 16 in the Structure of I274V Variant of E. Coli Kate
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Structure of I274V Variant of E. Coli Kate within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe754
b:2.8
occ:0.25
|
FE
|
A:HEM754
|
0.0
|
2.8
|
0.2
|
FE
|
A:HDD760
|
0.3
|
2.0
|
0.2
|
FE
|
A:HDE761
|
0.4
|
7.9
|
0.2
|
FE
|
A:HEM755
|
0.5
|
10.1
|
0.2
|
OH
|
A:TYR415
|
1.9
|
4.9
|
1.0
|
NB
|
A:HEM755
|
1.9
|
2.0
|
0.2
|
NC
|
A:HDD760
|
2.0
|
3.1
|
0.2
|
NA
|
A:HDE761
|
2.0
|
3.8
|
0.2
|
NA
|
A:HEM755
|
2.0
|
2.6
|
0.2
|
ND
|
A:HDD760
|
2.0
|
2.8
|
0.2
|
NA
|
A:HEM754
|
2.0
|
2.8
|
0.2
|
ND
|
A:HEM754
|
2.0
|
4.7
|
0.2
|
ND
|
A:HDE761
|
2.1
|
2.5
|
0.2
|
NB
|
A:HDE761
|
2.1
|
2.0
|
0.2
|
NC
|
A:HEM754
|
2.1
|
4.0
|
0.2
|
NB
|
A:HEM754
|
2.1
|
4.6
|
0.2
|
NC
|
A:HDE761
|
2.1
|
2.0
|
0.2
|
NA
|
A:HDD760
|
2.1
|
2.0
|
0.2
|
ND
|
A:HEM755
|
2.2
|
2.0
|
0.2
|
NB
|
A:HDD760
|
2.3
|
3.1
|
0.2
|
O
|
A:HOH2309
|
2.4
|
25.9
|
1.0
|
NC
|
A:HEM755
|
2.4
|
3.7
|
0.2
|
CZ
|
A:TYR415
|
2.8
|
2.8
|
1.0
|
C1B
|
A:HEM755
|
2.8
|
2.0
|
0.2
|
C4C
|
A:HDD760
|
2.9
|
2.9
|
0.2
|
C4A
|
A:HEM755
|
2.9
|
3.4
|
0.2
|
C1D
|
A:HDD760
|
2.9
|
2.0
|
0.2
|
C4B
|
A:HEM755
|
3.0
|
4.9
|
0.2
|
C4D
|
A:HEM754
|
3.0
|
2.7
|
0.2
|
C1A
|
A:HDE761
|
3.0
|
2.6
|
0.2
|
C4C
|
A:HDE761
|
3.0
|
2.0
|
0.2
|
C4A
|
A:HDE761
|
3.0
|
2.0
|
0.2
|
C4D
|
A:HDE761
|
3.0
|
3.6
|
0.2
|
C1B
|
A:HDE761
|
3.1
|
2.0
|
0.2
|
C1A
|
A:HEM755
|
3.1
|
3.8
|
0.2
|
C4D
|
A:HDD760
|
3.1
|
2.0
|
0.2
|
C1A
|
A:HEM754
|
3.1
|
3.1
|
0.2
|
C1A
|
A:HDD760
|
3.1
|
2.8
|
0.2
|
C4A
|
A:HEM754
|
3.1
|
2.8
|
0.2
|
C4B
|
A:HEM754
|
3.1
|
4.3
|
0.2
|
C1D
|
A:HEM754
|
3.1
|
2.7
|
0.2
|
C1C
|
A:HEM754
|
3.1
|
4.0
|
0.2
|
C1C
|
A:HDD760
|
3.1
|
2.2
|
0.2
|
C4B
|
A:HDE761
|
3.1
|
2.0
|
0.2
|
C1D
|
A:HDE761
|
3.1
|
3.5
|
0.2
|
C4C
|
A:HEM754
|
3.1
|
2.8
|
0.2
|
C1B
|
A:HEM754
|
3.1
|
2.9
|
0.2
|
C4D
|
A:HEM755
|
3.1
|
4.2
|
0.2
|
C4A
|
A:HDD760
|
3.2
|
2.0
|
0.2
|
C1C
|
A:HDE761
|
3.2
|
2.0
|
0.2
|
CHB
|
A:HEM755
|
3.2
|
3.5
|
0.2
|
CHD
|
A:HDD760
|
3.2
|
2.1
|
0.2
|
C1C
|
A:HEM755
|
3.2
|
5.0
|
0.2
|
C1D
|
A:HEM755
|
3.3
|
3.1
|
0.2
|
C4B
|
A:HDD760
|
3.3
|
2.9
|
0.2
|
C1B
|
A:HDD760
|
3.3
|
2.0
|
0.2
|
C4C
|
A:HEM755
|
3.4
|
3.3
|
0.2
|
CHA
|
A:HEM754
|
3.4
|
4.5
|
0.2
|
CHA
|
A:HDE761
|
3.4
|
5.0
|
0.2
|
CHA
|
A:HDD760
|
3.4
|
2.2
|
0.2
|
CHB
|
A:HDE761
|
3.5
|
2.8
|
0.2
|
CHC
|
A:HEM754
|
3.5
|
4.1
|
0.2
|
CHC
|
A:HEM755
|
3.5
|
6.0
|
0.2
|
CHD
|
A:HEM754
|
3.5
|
3.2
|
0.2
|
CE1
|
A:TYR415
|
3.5
|
2.8
|
1.0
|
CHA
|
A:HEM755
|
3.5
|
4.2
|
0.2
|
CHB
|
A:HEM754
|
3.5
|
3.9
|
0.2
|
CHD
|
A:HDE761
|
3.5
|
3.3
|
0.2
|
CHC
|
A:HDD760
|
3.6
|
5.1
|
0.2
|
CHC
|
A:HDE761
|
3.6
|
2.3
|
0.2
|
CE2
|
A:TYR415
|
3.6
|
3.0
|
1.0
|
CHB
|
A:HDD760
|
3.7
|
2.0
|
0.2
|
CHD
|
A:HEM755
|
3.7
|
2.0
|
0.2
|
NE
|
A:ARG411
|
3.9
|
2.9
|
1.0
|
C2B
|
A:HEM755
|
4.0
|
4.5
|
0.2
|
C3B
|
A:HEM755
|
4.1
|
5.0
|
0.2
|
NH2
|
A:ARG411
|
4.1
|
3.5
|
1.0
|
C3C
|
A:HDD760
|
4.2
|
2.0
|
0.2
|
C3A
|
A:HEM755
|
4.2
|
5.0
|
0.2
|
C2D
|
A:HDD760
|
4.2
|
2.9
|
0.2
|
C2A
|
A:HEM755
|
4.2
|
5.3
|
0.2
|
C2B
|
A:HDE761
|
4.2
|
2.0
|
0.2
|
C3D
|
A:HEM754
|
4.2
|
4.3
|
0.2
|
C2C
|
A:HDD760
|
4.3
|
2.0
|
0.2
|
C3C
|
A:HDE761
|
4.3
|
2.0
|
0.2
|
C3B
|
A:HDE761
|
4.3
|
2.0
|
0.2
|
C3D
|
A:HDD760
|
4.3
|
3.2
|
0.2
|
C3A
|
A:HEM754
|
4.3
|
3.2
|
0.2
|
C2A
|
A:HEM754
|
4.3
|
3.2
|
0.2
|
C2D
|
A:HEM754
|
4.3
|
4.8
|
0.2
|
C3B
|
A:HEM754
|
4.3
|
3.7
|
0.2
|
C3A
|
A:HDE761
|
4.3
|
3.6
|
0.2
|
C2A
|
A:HDD760
|
4.3
|
2.2
|
0.2
|
C2A
|
A:HDE761
|
4.3
|
3.4
|
0.2
|
C2B
|
A:HEM754
|
4.3
|
4.2
|
0.2
|
C3D
|
A:HDE761
|
4.3
|
3.3
|
0.2
|
C3A
|
A:HDD760
|
4.3
|
2.0
|
0.2
|
C2C
|
A:HEM754
|
4.3
|
2.8
|
0.2
|
C3C
|
A:HEM754
|
4.3
|
3.4
|
0.2
|
C2D
|
A:HDE761
|
4.3
|
3.7
|
0.2
|
C2C
|
A:HDE761
|
4.4
|
2.0
|
0.2
|
C3D
|
A:HEM755
|
4.4
|
4.8
|
0.2
|
C2C
|
A:HEM755
|
4.4
|
5.9
|
0.2
|
C2D
|
A:HEM755
|
4.5
|
3.2
|
0.2
|
CZ
|
A:ARG411
|
4.5
|
3.1
|
1.0
|
C3C
|
A:HEM755
|
4.5
|
3.4
|
0.2
|
C2B
|
A:HDD760
|
4.5
|
2.6
|
0.2
|
C3B
|
A:HDD760
|
4.5
|
2.9
|
0.2
|
CG2
|
A:VAL127
|
4.6
|
4.8
|
1.0
|
CD1
|
A:TYR415
|
4.8
|
2.8
|
1.0
|
CZ
|
A:PHE214
|
4.8
|
4.8
|
1.0
|
O
|
A:HOH1078
|
4.8
|
12.9
|
1.0
|
CD2
|
A:TYR415
|
4.9
|
4.3
|
1.0
|
CD2
|
A:HIS128
|
4.9
|
3.9
|
1.0
|
OND
|
A:HDD760
|
4.9
|
2.0
|
0.2
|
O1D
|
A:HDD760
|
4.9
|
4.5
|
0.2
|
NE2
|
A:HIS128
|
4.9
|
5.3
|
1.0
|
CD
|
A:ARG411
|
5.0
|
4.2
|
1.0
|
|
Iron binding site 2 out
of 16 in 3p9p
Go back to
Iron Binding Sites List in 3p9p
Iron binding site 2 out
of 16 in the Structure of I274V Variant of E. Coli Kate
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Structure of I274V Variant of E. Coli Kate within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe761
b:7.9
occ:0.25
|
FE
|
A:HDE761
|
0.0
|
7.9
|
0.2
|
FE
|
A:HEM755
|
0.3
|
10.1
|
0.2
|
FE
|
A:HEM754
|
0.4
|
2.8
|
0.2
|
FE
|
A:HDD760
|
0.4
|
2.0
|
0.2
|
NB
|
A:HEM755
|
1.8
|
2.0
|
0.2
|
NA
|
A:HEM755
|
2.0
|
2.6
|
0.2
|
NC
|
A:HDD760
|
2.0
|
3.1
|
0.2
|
NA
|
A:HDE761
|
2.0
|
3.8
|
0.2
|
NB
|
A:HDE761
|
2.0
|
2.0
|
0.2
|
O
|
A:HOH2309
|
2.0
|
25.9
|
1.0
|
ND
|
A:HDD760
|
2.0
|
2.8
|
0.2
|
NC
|
A:HDE761
|
2.0
|
2.0
|
0.2
|
NA
|
A:HEM754
|
2.1
|
2.8
|
0.2
|
NC
|
A:HEM754
|
2.1
|
4.0
|
0.2
|
ND
|
A:HDE761
|
2.1
|
2.5
|
0.2
|
NB
|
A:HEM754
|
2.1
|
4.6
|
0.2
|
ND
|
A:HEM754
|
2.1
|
4.7
|
0.2
|
NA
|
A:HDD760
|
2.1
|
2.0
|
0.2
|
ND
|
A:HEM755
|
2.2
|
2.0
|
0.2
|
OH
|
A:TYR415
|
2.2
|
4.9
|
1.0
|
NB
|
A:HDD760
|
2.3
|
3.1
|
0.2
|
NC
|
A:HEM755
|
2.3
|
3.7
|
0.2
|
C1B
|
A:HEM755
|
2.8
|
2.0
|
0.2
|
C4B
|
A:HEM755
|
2.9
|
4.9
|
0.2
|
C4C
|
A:HDD760
|
2.9
|
2.9
|
0.2
|
C4A
|
A:HEM755
|
2.9
|
3.4
|
0.2
|
C1D
|
A:HDD760
|
3.0
|
2.0
|
0.2
|
C4C
|
A:HDE761
|
3.0
|
2.0
|
0.2
|
C4D
|
A:HEM754
|
3.0
|
2.7
|
0.2
|
C4B
|
A:HDE761
|
3.0
|
2.0
|
0.2
|
C4B
|
A:HEM754
|
3.0
|
4.3
|
0.2
|
C1B
|
A:HDE761
|
3.0
|
2.0
|
0.2
|
C1A
|
A:HEM755
|
3.1
|
3.8
|
0.2
|
C1A
|
A:HDE761
|
3.1
|
2.6
|
0.2
|
C1C
|
A:HEM754
|
3.1
|
4.0
|
0.2
|
C4D
|
A:HDE761
|
3.1
|
3.6
|
0.2
|
C4D
|
A:HDD760
|
3.1
|
2.0
|
0.2
|
C4A
|
A:HDE761
|
3.1
|
2.0
|
0.2
|
C1C
|
A:HDD760
|
3.1
|
2.2
|
0.2
|
C1A
|
A:HDD760
|
3.1
|
2.8
|
0.2
|
C1A
|
A:HEM754
|
3.1
|
3.1
|
0.2
|
C4A
|
A:HEM754
|
3.1
|
2.8
|
0.2
|
C1C
|
A:HDE761
|
3.1
|
2.0
|
0.2
|
C4C
|
A:HEM754
|
3.1
|
2.8
|
0.2
|
C1B
|
A:HEM754
|
3.1
|
2.9
|
0.2
|
C1D
|
A:HEM754
|
3.1
|
2.7
|
0.2
|
CZ
|
A:TYR415
|
3.1
|
2.8
|
1.0
|
C4D
|
A:HEM755
|
3.1
|
4.2
|
0.2
|
C1D
|
A:HDE761
|
3.1
|
3.5
|
0.2
|
CHB
|
A:HEM755
|
3.2
|
3.5
|
0.2
|
C4A
|
A:HDD760
|
3.2
|
2.0
|
0.2
|
C1C
|
A:HEM755
|
3.2
|
5.0
|
0.2
|
C4B
|
A:HDD760
|
3.2
|
2.9
|
0.2
|
C1D
|
A:HEM755
|
3.3
|
3.1
|
0.2
|
CHD
|
A:HDD760
|
3.3
|
2.1
|
0.2
|
C1B
|
A:HDD760
|
3.3
|
2.0
|
0.2
|
C4C
|
A:HEM755
|
3.3
|
3.3
|
0.2
|
CHC
|
A:HEM754
|
3.4
|
4.1
|
0.2
|
CHA
|
A:HDD760
|
3.4
|
2.2
|
0.2
|
CHC
|
A:HEM755
|
3.4
|
6.0
|
0.2
|
CHA
|
A:HEM754
|
3.4
|
4.5
|
0.2
|
CHA
|
A:HDE761
|
3.4
|
5.0
|
0.2
|
CHB
|
A:HDE761
|
3.5
|
2.8
|
0.2
|
CHC
|
A:HDE761
|
3.5
|
2.3
|
0.2
|
CHA
|
A:HEM755
|
3.5
|
4.2
|
0.2
|
CHB
|
A:HEM754
|
3.5
|
3.9
|
0.2
|
CHD
|
A:HDE761
|
3.5
|
3.3
|
0.2
|
CHD
|
A:HEM754
|
3.5
|
3.2
|
0.2
|
CHC
|
A:HDD760
|
3.5
|
5.1
|
0.2
|
CHB
|
A:HDD760
|
3.7
|
2.0
|
0.2
|
CHD
|
A:HEM755
|
3.7
|
2.0
|
0.2
|
CE1
|
A:TYR415
|
3.8
|
2.8
|
1.0
|
CE2
|
A:TYR415
|
4.0
|
3.0
|
1.0
|
C2B
|
A:HEM755
|
4.0
|
4.5
|
0.2
|
C3B
|
A:HEM755
|
4.0
|
5.0
|
0.2
|
C3C
|
A:HDD760
|
4.1
|
2.0
|
0.2
|
C3A
|
A:HEM755
|
4.2
|
5.0
|
0.2
|
NE
|
A:ARG411
|
4.2
|
2.9
|
1.0
|
C2C
|
A:HDD760
|
4.2
|
2.0
|
0.2
|
C2A
|
A:HEM755
|
4.2
|
5.3
|
0.2
|
C3B
|
A:HDE761
|
4.2
|
2.0
|
0.2
|
C2D
|
A:HDD760
|
4.2
|
2.9
|
0.2
|
C2B
|
A:HDE761
|
4.2
|
2.0
|
0.2
|
C3C
|
A:HDE761
|
4.3
|
2.0
|
0.2
|
C3D
|
A:HEM754
|
4.3
|
4.3
|
0.2
|
C3B
|
A:HEM754
|
4.3
|
3.7
|
0.2
|
C3D
|
A:HDD760
|
4.3
|
3.2
|
0.2
|
C3A
|
A:HEM754
|
4.3
|
3.2
|
0.2
|
C2A
|
A:HEM754
|
4.3
|
3.2
|
0.2
|
C2C
|
A:HEM754
|
4.3
|
2.8
|
0.2
|
C2B
|
A:HEM754
|
4.3
|
4.2
|
0.2
|
C2A
|
A:HDD760
|
4.3
|
2.2
|
0.2
|
C2D
|
A:HEM754
|
4.3
|
4.8
|
0.2
|
C3C
|
A:HEM754
|
4.3
|
3.4
|
0.2
|
C2C
|
A:HDE761
|
4.3
|
2.0
|
0.2
|
CG2
|
A:VAL127
|
4.3
|
4.8
|
1.0
|
C3A
|
A:HDD760
|
4.4
|
2.0
|
0.2
|
C3D
|
A:HDE761
|
4.4
|
3.3
|
0.2
|
C3A
|
A:HDE761
|
4.4
|
3.6
|
0.2
|
C2D
|
A:HDE761
|
4.4
|
3.7
|
0.2
|
C2A
|
A:HDE761
|
4.4
|
3.4
|
0.2
|
C3D
|
A:HEM755
|
4.4
|
4.8
|
0.2
|
NH2
|
A:ARG411
|
4.4
|
3.5
|
1.0
|
C2C
|
A:HEM755
|
4.4
|
5.9
|
0.2
|
C2D
|
A:HEM755
|
4.5
|
3.2
|
0.2
|
C3B
|
A:HDD760
|
4.5
|
2.9
|
0.2
|
C2B
|
A:HDD760
|
4.5
|
2.6
|
0.2
|
C3C
|
A:HEM755
|
4.5
|
3.4
|
0.2
|
CZ
|
A:PHE214
|
4.5
|
4.8
|
1.0
|
O
|
A:HOH1078
|
4.6
|
12.9
|
1.0
|
CD2
|
A:HIS128
|
4.7
|
3.9
|
1.0
|
NE2
|
A:HIS128
|
4.7
|
5.3
|
1.0
|
CZ
|
A:ARG411
|
4.7
|
3.1
|
1.0
|
CE1
|
A:PHE214
|
5.0
|
5.0
|
1.0
|
|
Iron binding site 3 out
of 16 in 3p9p
Go back to
Iron Binding Sites List in 3p9p
Iron binding site 3 out
of 16 in the Structure of I274V Variant of E. Coli Kate
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Structure of I274V Variant of E. Coli Kate within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe755
b:10.1
occ:0.25
|
FE
|
A:HEM755
|
0.0
|
10.1
|
0.2
|
FE
|
A:HDE761
|
0.3
|
7.9
|
0.2
|
FE
|
A:HDD760
|
0.4
|
2.0
|
0.2
|
FE
|
A:HEM754
|
0.5
|
2.8
|
0.2
|
NA
|
A:HEM754
|
1.8
|
2.8
|
0.2
|
ND
|
A:HDE761
|
1.8
|
2.5
|
0.2
|
NA
|
A:HDD760
|
1.9
|
2.0
|
0.2
|
NC
|
A:HDE761
|
1.9
|
2.0
|
0.2
|
ND
|
A:HEM755
|
1.9
|
2.0
|
0.2
|
O
|
A:HOH2309
|
1.9
|
25.9
|
1.0
|
NB
|
A:HEM754
|
2.0
|
4.6
|
0.2
|
NB
|
A:HEM755
|
2.0
|
2.0
|
0.2
|
NA
|
A:HEM755
|
2.1
|
2.6
|
0.2
|
NC
|
A:HEM755
|
2.1
|
3.7
|
0.2
|
NB
|
A:HDD760
|
2.1
|
3.1
|
0.2
|
NA
|
A:HDE761
|
2.1
|
3.8
|
0.2
|
ND
|
A:HDD760
|
2.2
|
2.8
|
0.2
|
NC
|
A:HDD760
|
2.2
|
3.1
|
0.2
|
NB
|
A:HDE761
|
2.2
|
2.0
|
0.2
|
ND
|
A:HEM754
|
2.2
|
4.7
|
0.2
|
OH
|
A:TYR415
|
2.3
|
4.9
|
1.0
|
NC
|
A:HEM754
|
2.3
|
4.0
|
0.2
|
C4C
|
A:HDE761
|
2.8
|
2.0
|
0.2
|
C4A
|
A:HEM754
|
2.8
|
2.8
|
0.2
|
C1D
|
A:HDE761
|
2.9
|
3.5
|
0.2
|
C4D
|
A:HDE761
|
2.9
|
3.6
|
0.2
|
C1A
|
A:HDD760
|
2.9
|
2.8
|
0.2
|
C4A
|
A:HDD760
|
2.9
|
2.0
|
0.2
|
C1A
|
A:HEM754
|
2.9
|
3.1
|
0.2
|
C1B
|
A:HEM754
|
2.9
|
2.9
|
0.2
|
C4D
|
A:HEM755
|
3.0
|
4.2
|
0.2
|
C1D
|
A:HEM755
|
3.0
|
3.1
|
0.2
|
C4B
|
A:HEM754
|
3.0
|
4.3
|
0.2
|
C1B
|
A:HEM755
|
3.0
|
2.0
|
0.2
|
C4B
|
A:HEM755
|
3.1
|
4.9
|
0.2
|
C1B
|
A:HDD760
|
3.1
|
2.0
|
0.2
|
C1C
|
A:HDE761
|
3.1
|
2.0
|
0.2
|
C4D
|
A:HEM754
|
3.1
|
2.7
|
0.2
|
C1A
|
A:HEM755
|
3.1
|
3.8
|
0.2
|
C4C
|
A:HEM755
|
3.1
|
3.3
|
0.2
|
C1A
|
A:HDE761
|
3.1
|
2.6
|
0.2
|
C1C
|
A:HEM755
|
3.1
|
5.0
|
0.2
|
C4D
|
A:HDD760
|
3.1
|
2.0
|
0.2
|
C4A
|
A:HEM755
|
3.1
|
3.4
|
0.2
|
C4C
|
A:HDD760
|
3.2
|
2.9
|
0.2
|
C4B
|
A:HDD760
|
3.2
|
2.9
|
0.2
|
C1D
|
A:HDD760
|
3.2
|
2.0
|
0.2
|
CZ
|
A:TYR415
|
3.2
|
2.8
|
1.0
|
C4B
|
A:HDE761
|
3.2
|
2.0
|
0.2
|
C1C
|
A:HDD760
|
3.2
|
2.2
|
0.2
|
C1C
|
A:HEM754
|
3.3
|
4.0
|
0.2
|
CHB
|
A:HEM754
|
3.3
|
3.9
|
0.2
|
CHD
|
A:HDE761
|
3.3
|
3.3
|
0.2
|
C4A
|
A:HDE761
|
3.3
|
2.0
|
0.2
|
C1B
|
A:HDE761
|
3.3
|
2.0
|
0.2
|
CHA
|
A:HDD760
|
3.3
|
2.2
|
0.2
|
CHA
|
A:HEM754
|
3.3
|
4.5
|
0.2
|
CHA
|
A:HDE761
|
3.4
|
5.0
|
0.2
|
C1D
|
A:HEM754
|
3.4
|
2.7
|
0.2
|
CHB
|
A:HDD760
|
3.4
|
2.0
|
0.2
|
C4C
|
A:HEM754
|
3.4
|
2.8
|
0.2
|
CHD
|
A:HEM755
|
3.4
|
2.0
|
0.2
|
CHA
|
A:HEM755
|
3.4
|
4.2
|
0.2
|
CHB
|
A:HEM755
|
3.4
|
3.5
|
0.2
|
CHC
|
A:HEM755
|
3.5
|
6.0
|
0.2
|
CHC
|
A:HEM754
|
3.5
|
4.1
|
0.2
|
CHD
|
A:HDD760
|
3.5
|
2.1
|
0.2
|
CHC
|
A:HDE761
|
3.6
|
2.3
|
0.2
|
CHC
|
A:HDD760
|
3.6
|
5.1
|
0.2
|
CHB
|
A:HDE761
|
3.8
|
2.8
|
0.2
|
CHD
|
A:HEM754
|
3.8
|
3.2
|
0.2
|
CE1
|
A:TYR415
|
3.9
|
2.8
|
1.0
|
C3A
|
A:HEM754
|
4.0
|
3.2
|
0.2
|
C2A
|
A:HEM754
|
4.1
|
3.2
|
0.2
|
C3C
|
A:HDE761
|
4.1
|
2.0
|
0.2
|
C3A
|
A:HDD760
|
4.1
|
2.0
|
0.2
|
C2A
|
A:HDD760
|
4.1
|
2.2
|
0.2
|
C2D
|
A:HDE761
|
4.1
|
3.7
|
0.2
|
CE2
|
A:TYR415
|
4.1
|
3.0
|
1.0
|
C2B
|
A:HEM754
|
4.1
|
4.2
|
0.2
|
C3D
|
A:HDE761
|
4.2
|
3.3
|
0.2
|
C3B
|
A:HEM754
|
4.2
|
3.7
|
0.2
|
C3D
|
A:HEM755
|
4.2
|
4.8
|
0.2
|
C2D
|
A:HEM755
|
4.2
|
3.2
|
0.2
|
NE
|
A:ARG411
|
4.2
|
2.9
|
1.0
|
C2B
|
A:HEM755
|
4.2
|
4.5
|
0.2
|
C3B
|
A:HEM755
|
4.2
|
5.0
|
0.2
|
C2C
|
A:HDE761
|
4.3
|
2.0
|
0.2
|
C2B
|
A:HDD760
|
4.3
|
2.6
|
0.2
|
NH2
|
A:ARG411
|
4.3
|
3.5
|
1.0
|
C3C
|
A:HEM755
|
4.3
|
3.4
|
0.2
|
C2A
|
A:HEM755
|
4.3
|
5.3
|
0.2
|
C2C
|
A:HEM755
|
4.3
|
5.9
|
0.2
|
C3A
|
A:HEM755
|
4.3
|
5.0
|
0.2
|
C3B
|
A:HDD760
|
4.4
|
2.9
|
0.2
|
C3D
|
A:HEM754
|
4.4
|
4.3
|
0.2
|
O
|
A:HOH1078
|
4.4
|
12.9
|
1.0
|
C3C
|
A:HDD760
|
4.4
|
2.0
|
0.2
|
CG2
|
A:VAL127
|
4.4
|
4.8
|
1.0
|
C3D
|
A:HDD760
|
4.4
|
3.2
|
0.2
|
C2C
|
A:HDD760
|
4.4
|
2.0
|
0.2
|
C2D
|
A:HDD760
|
4.4
|
2.9
|
0.2
|
C3B
|
A:HDE761
|
4.4
|
2.0
|
0.2
|
NE2
|
A:HIS128
|
4.5
|
5.3
|
1.0
|
CD2
|
A:HIS128
|
4.5
|
3.9
|
1.0
|
C2A
|
A:HDE761
|
4.5
|
3.4
|
0.2
|
C2B
|
A:HDE761
|
4.5
|
2.0
|
0.2
|
C2D
|
A:HEM754
|
4.5
|
4.8
|
0.2
|
C2C
|
A:HEM754
|
4.5
|
2.8
|
0.2
|
C3A
|
A:HDE761
|
4.6
|
3.6
|
0.2
|
C3C
|
A:HEM754
|
4.6
|
3.4
|
0.2
|
CZ
|
A:PHE214
|
4.6
|
4.8
|
1.0
|
CZ
|
A:ARG411
|
4.7
|
3.1
|
1.0
|
|
Iron binding site 4 out
of 16 in 3p9p
Go back to
Iron Binding Sites List in 3p9p
Iron binding site 4 out
of 16 in the Structure of I274V Variant of E. Coli Kate
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Structure of I274V Variant of E. Coli Kate within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe760
b:2.0
occ:0.25
|
FE
|
A:HDD760
|
0.0
|
2.0
|
0.2
|
FE
|
A:HEM754
|
0.3
|
2.8
|
0.2
|
FE
|
A:HEM755
|
0.4
|
10.1
|
0.2
|
FE
|
A:HDE761
|
0.4
|
7.9
|
0.2
|
NC
|
A:HDE761
|
1.9
|
2.0
|
0.2
|
NB
|
A:HEM754
|
1.9
|
4.6
|
0.2
|
OH
|
A:TYR415
|
1.9
|
4.9
|
1.0
|
NB
|
A:HEM755
|
1.9
|
2.0
|
0.2
|
NA
|
A:HEM754
|
2.0
|
2.8
|
0.2
|
ND
|
A:HDE761
|
2.0
|
2.5
|
0.2
|
NA
|
A:HDD760
|
2.0
|
2.0
|
0.2
|
NC
|
A:HDD760
|
2.0
|
3.1
|
0.2
|
NB
|
A:HDD760
|
2.0
|
3.1
|
0.2
|
ND
|
A:HEM755
|
2.1
|
2.0
|
0.2
|
NC
|
A:HEM755
|
2.1
|
3.7
|
0.2
|
NB
|
A:HDE761
|
2.2
|
2.0
|
0.2
|
NA
|
A:HEM755
|
2.2
|
2.6
|
0.2
|
NC
|
A:HEM754
|
2.2
|
4.0
|
0.2
|
NA
|
A:HDE761
|
2.2
|
3.8
|
0.2
|
ND
|
A:HDD760
|
2.2
|
2.8
|
0.2
|
O
|
A:HOH2309
|
2.2
|
25.9
|
1.0
|
ND
|
A:HEM754
|
2.3
|
4.7
|
0.2
|
C4C
|
A:HDE761
|
2.8
|
2.0
|
0.2
|
C1B
|
A:HEM754
|
2.9
|
2.9
|
0.2
|
C4B
|
A:HEM754
|
2.9
|
4.3
|
0.2
|
C4A
|
A:HEM754
|
2.9
|
2.8
|
0.2
|
CZ
|
A:TYR415
|
2.9
|
2.8
|
1.0
|
C4B
|
A:HEM755
|
2.9
|
4.9
|
0.2
|
C1B
|
A:HEM755
|
3.0
|
2.0
|
0.2
|
C1D
|
A:HDE761
|
3.0
|
3.5
|
0.2
|
C4A
|
A:HDD760
|
3.0
|
2.0
|
0.2
|
C1C
|
A:HDE761
|
3.0
|
2.0
|
0.2
|
C4D
|
A:HDE761
|
3.0
|
3.6
|
0.2
|
C1C
|
A:HEM755
|
3.0
|
5.0
|
0.2
|
C1B
|
A:HDD760
|
3.1
|
2.0
|
0.2
|
C4C
|
A:HDD760
|
3.1
|
2.9
|
0.2
|
C1A
|
A:HDD760
|
3.1
|
2.8
|
0.2
|
C1A
|
A:HEM754
|
3.1
|
3.1
|
0.2
|
C4B
|
A:HDD760
|
3.1
|
2.9
|
0.2
|
C1D
|
A:HEM755
|
3.1
|
3.1
|
0.2
|
C4C
|
A:HEM755
|
3.1
|
3.3
|
0.2
|
C1C
|
A:HDD760
|
3.1
|
2.2
|
0.2
|
C4B
|
A:HDE761
|
3.1
|
2.0
|
0.2
|
C1C
|
A:HEM754
|
3.1
|
4.0
|
0.2
|
C4D
|
A:HEM755
|
3.1
|
4.2
|
0.2
|
C4A
|
A:HEM755
|
3.2
|
3.4
|
0.2
|
C1D
|
A:HDD760
|
3.2
|
2.0
|
0.2
|
C4D
|
A:HEM754
|
3.2
|
2.7
|
0.2
|
C1A
|
A:HDE761
|
3.2
|
2.6
|
0.2
|
C1B
|
A:HDE761
|
3.2
|
2.0
|
0.2
|
C1A
|
A:HEM755
|
3.2
|
3.8
|
0.2
|
C4D
|
A:HDD760
|
3.2
|
2.0
|
0.2
|
CHB
|
A:HEM754
|
3.3
|
3.9
|
0.2
|
CHD
|
A:HDE761
|
3.3
|
3.3
|
0.2
|
C4A
|
A:HDE761
|
3.3
|
2.0
|
0.2
|
C4C
|
A:HEM754
|
3.3
|
2.8
|
0.2
|
C1D
|
A:HEM754
|
3.4
|
2.7
|
0.2
|
CHC
|
A:HEM754
|
3.4
|
4.1
|
0.2
|
CHC
|
A:HEM755
|
3.4
|
6.0
|
0.2
|
CHB
|
A:HEM755
|
3.4
|
3.5
|
0.2
|
CHB
|
A:HDD760
|
3.4
|
2.0
|
0.2
|
CHD
|
A:HDD760
|
3.5
|
2.1
|
0.2
|
CHD
|
A:HEM755
|
3.5
|
2.0
|
0.2
|
CHC
|
A:HDD760
|
3.5
|
5.1
|
0.2
|
CHC
|
A:HDE761
|
3.5
|
2.3
|
0.2
|
CHA
|
A:HDD760
|
3.5
|
2.2
|
0.2
|
CHA
|
A:HEM754
|
3.5
|
4.5
|
0.2
|
CHA
|
A:HDE761
|
3.5
|
5.0
|
0.2
|
CHA
|
A:HEM755
|
3.6
|
4.2
|
0.2
|
CE1
|
A:TYR415
|
3.7
|
2.8
|
1.0
|
CHB
|
A:HDE761
|
3.7
|
2.8
|
0.2
|
CHD
|
A:HEM754
|
3.7
|
3.2
|
0.2
|
CE2
|
A:TYR415
|
3.8
|
3.0
|
1.0
|
NE
|
A:ARG411
|
3.9
|
2.9
|
1.0
|
C3C
|
A:HDE761
|
4.0
|
2.0
|
0.2
|
NH2
|
A:ARG411
|
4.0
|
3.5
|
1.0
|
C2B
|
A:HEM754
|
4.1
|
4.2
|
0.2
|
C3B
|
A:HEM754
|
4.1
|
3.7
|
0.2
|
C3B
|
A:HEM755
|
4.1
|
5.0
|
0.2
|
C2B
|
A:HEM755
|
4.1
|
4.5
|
0.2
|
C3A
|
A:HEM754
|
4.2
|
3.2
|
0.2
|
C2C
|
A:HDE761
|
4.2
|
2.0
|
0.2
|
C3A
|
A:HDD760
|
4.2
|
2.0
|
0.2
|
C2D
|
A:HDE761
|
4.2
|
3.7
|
0.2
|
C2C
|
A:HEM755
|
4.2
|
5.9
|
0.2
|
C2A
|
A:HEM754
|
4.2
|
3.2
|
0.2
|
C3C
|
A:HEM755
|
4.2
|
3.4
|
0.2
|
C2A
|
A:HDD760
|
4.3
|
2.2
|
0.2
|
C2B
|
A:HDD760
|
4.3
|
2.6
|
0.2
|
C3C
|
A:HDD760
|
4.3
|
2.0
|
0.2
|
C3B
|
A:HDD760
|
4.3
|
2.9
|
0.2
|
C3D
|
A:HDE761
|
4.3
|
3.3
|
0.2
|
C2C
|
A:HDD760
|
4.3
|
2.0
|
0.2
|
C3B
|
A:HDE761
|
4.3
|
2.0
|
0.2
|
C2D
|
A:HEM755
|
4.3
|
3.2
|
0.2
|
C3D
|
A:HEM755
|
4.3
|
4.8
|
0.2
|
C2B
|
A:HDE761
|
4.4
|
2.0
|
0.2
|
CZ
|
A:ARG411
|
4.4
|
3.1
|
1.0
|
C3A
|
A:HEM755
|
4.4
|
5.0
|
0.2
|
C2C
|
A:HEM754
|
4.4
|
2.8
|
0.2
|
C2A
|
A:HEM755
|
4.4
|
5.3
|
0.2
|
C2D
|
A:HDD760
|
4.4
|
2.9
|
0.2
|
C3D
|
A:HEM754
|
4.5
|
4.3
|
0.2
|
C3C
|
A:HEM754
|
4.5
|
3.4
|
0.2
|
C3D
|
A:HDD760
|
4.5
|
3.2
|
0.2
|
C2A
|
A:HDE761
|
4.5
|
3.4
|
0.2
|
C2D
|
A:HEM754
|
4.5
|
4.8
|
0.2
|
C3A
|
A:HDE761
|
4.6
|
3.6
|
0.2
|
O
|
A:HOH1078
|
4.6
|
12.9
|
1.0
|
CG2
|
A:VAL127
|
4.7
|
4.8
|
1.0
|
NE2
|
A:HIS128
|
4.8
|
5.3
|
1.0
|
CZ
|
A:PHE214
|
4.8
|
4.8
|
1.0
|
CD2
|
A:HIS128
|
4.8
|
3.9
|
1.0
|
CD
|
A:ARG411
|
4.9
|
4.2
|
1.0
|
CD1
|
A:TYR415
|
5.0
|
2.8
|
1.0
|
|
Iron binding site 5 out
of 16 in 3p9p
Go back to
Iron Binding Sites List in 3p9p
Iron binding site 5 out
of 16 in the Structure of I274V Variant of E. Coli Kate
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Structure of I274V Variant of E. Coli Kate within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe754
b:3.1
occ:0.25
|
FE
|
B:HEM754
|
0.0
|
3.1
|
0.2
|
FE
|
B:HDD760
|
0.2
|
2.8
|
0.2
|
FE
|
B:HEM755
|
0.3
|
6.5
|
0.2
|
FE
|
B:HDE761
|
0.7
|
12.0
|
0.2
|
OH
|
B:TYR415
|
1.9
|
5.9
|
1.0
|
NC
|
B:HDD760
|
1.9
|
4.5
|
0.2
|
ND
|
B:HEM754
|
1.9
|
4.8
|
0.2
|
NA
|
B:HDE761
|
2.0
|
2.0
|
0.2
|
NA
|
B:HEM755
|
2.0
|
2.0
|
0.2
|
NB
|
B:HEM755
|
2.0
|
2.2
|
0.2
|
NB
|
B:HDE761
|
2.0
|
2.1
|
0.2
|
NA
|
B:HEM754
|
2.0
|
4.7
|
0.2
|
NB
|
B:HEM754
|
2.1
|
3.6
|
0.2
|
NC
|
B:HEM755
|
2.1
|
3.6
|
0.2
|
ND
|
B:HDD760
|
2.1
|
3.9
|
0.2
|
NC
|
B:HEM754
|
2.1
|
3.7
|
0.2
|
ND
|
B:HEM755
|
2.1
|
4.1
|
0.2
|
NA
|
B:HDD760
|
2.1
|
5.0
|
0.2
|
NB
|
B:HDD760
|
2.2
|
2.8
|
0.2
|
NC
|
B:HDE761
|
2.3
|
3.8
|
0.2
|
ND
|
B:HDE761
|
2.3
|
2.0
|
0.2
|
O
|
B:HOH3444
|
2.7
|
28.8
|
1.0
|
CZ
|
B:TYR415
|
2.8
|
5.9
|
1.0
|
C1B
|
B:HDE761
|
2.8
|
2.8
|
0.2
|
C4C
|
B:HDD760
|
2.9
|
3.7
|
0.2
|
C4A
|
B:HDE761
|
2.9
|
3.4
|
0.2
|
C1C
|
B:HDD760
|
3.0
|
4.3
|
0.2
|
C4D
|
B:HEM754
|
3.0
|
5.5
|
0.2
|
C4B
|
B:HEM755
|
3.0
|
3.9
|
0.2
|
C4A
|
B:HEM755
|
3.0
|
3.5
|
0.2
|
C1B
|
B:HEM755
|
3.0
|
2.7
|
0.2
|
C4B
|
B:HDE761
|
3.0
|
3.4
|
0.2
|
C1A
|
B:HDE761
|
3.0
|
4.9
|
0.2
|
C1D
|
B:HEM754
|
3.0
|
5.0
|
0.2
|
C1C
|
B:HEM755
|
3.0
|
5.7
|
0.2
|
C1A
|
B:HEM755
|
3.1
|
5.5
|
0.2
|
C1A
|
B:HEM754
|
3.1
|
3.7
|
0.2
|
C4B
|
B:HEM754
|
3.1
|
4.2
|
0.2
|
C4A
|
B:HEM754
|
3.1
|
3.1
|
0.2
|
C1D
|
B:HDD760
|
3.1
|
3.0
|
0.2
|
C1B
|
B:HEM754
|
3.1
|
4.8
|
0.2
|
C1C
|
B:HEM754
|
3.1
|
4.2
|
0.2
|
C4D
|
B:HEM755
|
3.1
|
4.8
|
0.2
|
C4B
|
B:HDD760
|
3.1
|
3.7
|
0.2
|
C4C
|
B:HEM755
|
3.1
|
4.9
|
0.2
|
C4C
|
B:HEM754
|
3.2
|
6.3
|
0.2
|
C4A
|
B:HDD760
|
3.2
|
2.0
|
0.2
|
C1D
|
B:HEM755
|
3.2
|
3.2
|
0.2
|
C1B
|
B:HDD760
|
3.2
|
4.8
|
0.2
|
C1A
|
B:HDD760
|
3.2
|
2.8
|
0.2
|
C4D
|
B:HDD760
|
3.2
|
4.3
|
0.2
|
C1C
|
B:HDE761
|
3.2
|
4.6
|
0.2
|
C4D
|
B:HDE761
|
3.2
|
2.0
|
0.2
|
C4C
|
B:HDE761
|
3.2
|
2.9
|
0.2
|
CHB
|
B:HDE761
|
3.3
|
2.0
|
0.2
|
CHD
|
B:HDD760
|
3.3
|
5.7
|
0.2
|
C1D
|
B:HDE761
|
3.3
|
2.0
|
0.2
|
CHC
|
B:HEM755
|
3.4
|
5.1
|
0.2
|
CHB
|
B:HEM755
|
3.4
|
3.6
|
0.2
|
CHA
|
B:HEM754
|
3.4
|
5.3
|
0.2
|
CHC
|
B:HDD760
|
3.4
|
3.9
|
0.2
|
CHC
|
B:HEM754
|
3.4
|
4.8
|
0.2
|
CHB
|
B:HEM754
|
3.5
|
4.1
|
0.2
|
CHD
|
B:HEM754
|
3.5
|
6.6
|
0.2
|
CHA
|
B:HEM755
|
3.5
|
5.1
|
0.2
|
CHA
|
B:HDE761
|
3.5
|
4.7
|
0.2
|
CE1
|
B:TYR415
|
3.5
|
3.7
|
1.0
|
CHC
|
B:HDE761
|
3.5
|
4.0
|
0.2
|
CHD
|
B:HEM755
|
3.5
|
3.5
|
0.2
|
CHB
|
B:HDD760
|
3.6
|
2.7
|
0.2
|
CHA
|
B:HDD760
|
3.6
|
3.3
|
0.2
|
CHD
|
B:HDE761
|
3.7
|
2.0
|
0.2
|
CE2
|
B:TYR415
|
3.7
|
6.5
|
1.0
|
NE
|
B:ARG411
|
4.0
|
3.9
|
1.0
|
C2B
|
B:HDE761
|
4.0
|
2.6
|
0.2
|
C3C
|
B:HDD760
|
4.1
|
4.8
|
0.2
|
C3B
|
B:HDE761
|
4.1
|
2.0
|
0.2
|
C2C
|
B:HDD760
|
4.1
|
3.4
|
0.2
|
NH2
|
B:ARG411
|
4.2
|
4.6
|
1.0
|
C3D
|
B:HEM754
|
4.2
|
5.2
|
0.2
|
C3B
|
B:HEM755
|
4.2
|
3.6
|
0.2
|
C2B
|
B:HEM755
|
4.2
|
4.4
|
0.2
|
C3A
|
B:HEM755
|
4.2
|
6.6
|
0.2
|
C2D
|
B:HEM754
|
4.2
|
7.2
|
0.2
|
C2A
|
B:HEM755
|
4.2
|
5.1
|
0.2
|
C2C
|
B:HEM755
|
4.2
|
6.7
|
0.2
|
C3A
|
B:HDE761
|
4.3
|
4.3
|
0.2
|
C2A
|
B:HDE761
|
4.3
|
4.5
|
0.2
|
C3B
|
B:HEM754
|
4.3
|
5.5
|
0.2
|
C3C
|
B:HEM755
|
4.3
|
4.3
|
0.2
|
C3A
|
B:HEM754
|
4.3
|
4.3
|
0.2
|
C2B
|
B:HEM754
|
4.3
|
3.3
|
0.2
|
C2A
|
B:HEM754
|
4.3
|
3.1
|
0.2
|
C2C
|
B:HEM754
|
4.4
|
4.2
|
0.2
|
C3D
|
B:HEM755
|
4.4
|
5.0
|
0.2
|
C2D
|
B:HDD760
|
4.4
|
4.1
|
0.2
|
C3C
|
B:HEM754
|
4.4
|
3.4
|
0.2
|
C3B
|
B:HDD760
|
4.4
|
5.0
|
0.2
|
C3A
|
B:HDD760
|
4.4
|
3.3
|
0.2
|
C2C
|
B:HDE761
|
4.4
|
6.0
|
0.2
|
C2B
|
B:HDD760
|
4.4
|
3.1
|
0.2
|
C2D
|
B:HEM755
|
4.4
|
5.3
|
0.2
|
C3C
|
B:HDE761
|
4.4
|
2.7
|
0.2
|
C2A
|
B:HDD760
|
4.4
|
2.0
|
0.2
|
C3D
|
B:HDD760
|
4.4
|
4.2
|
0.2
|
CZ
|
B:ARG411
|
4.5
|
5.9
|
1.0
|
C3D
|
B:HDE761
|
4.5
|
2.7
|
0.2
|
C2D
|
B:HDE761
|
4.5
|
2.6
|
0.2
|
O
|
B:HOH840
|
4.7
|
16.6
|
1.0
|
CG2
|
B:VAL127
|
4.7
|
6.1
|
1.0
|
CZ
|
B:PHE214
|
4.8
|
5.7
|
1.0
|
CD1
|
B:TYR415
|
4.8
|
2.9
|
1.0
|
CD2
|
B:HIS128
|
4.9
|
3.5
|
1.0
|
NE2
|
B:HIS128
|
4.9
|
6.3
|
1.0
|
CD2
|
B:TYR415
|
5.0
|
4.8
|
1.0
|
CD
|
B:ARG411
|
5.0
|
3.3
|
1.0
|
O1A
|
B:HDE761
|
5.0
|
7.4
|
0.2
|
|
Iron binding site 6 out
of 16 in 3p9p
Go back to
Iron Binding Sites List in 3p9p
Iron binding site 6 out
of 16 in the Structure of I274V Variant of E. Coli Kate
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Structure of I274V Variant of E. Coli Kate within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe761
b:12.0
occ:0.25
|
FE
|
B:HDE761
|
0.0
|
12.0
|
0.2
|
FE
|
B:HEM755
|
0.4
|
6.5
|
0.2
|
FE
|
B:HDD760
|
0.6
|
2.8
|
0.2
|
FE
|
B:HEM754
|
0.7
|
3.1
|
0.2
|
NA
|
B:HEM754
|
2.0
|
4.7
|
0.2
|
NC
|
B:HEM755
|
2.0
|
3.6
|
0.2
|
NB
|
B:HEM754
|
2.0
|
3.6
|
0.2
|
O
|
B:HOH3444
|
2.0
|
28.8
|
1.0
|
ND
|
B:HEM755
|
2.0
|
4.1
|
0.2
|
NB
|
B:HDE761
|
2.0
|
2.1
|
0.2
|
NC
|
B:HDE761
|
2.0
|
3.8
|
0.2
|
NA
|
B:HDE761
|
2.0
|
2.0
|
0.2
|
NA
|
B:HDD760
|
2.1
|
5.0
|
0.2
|
ND
|
B:HDE761
|
2.1
|
2.0
|
0.2
|
NB
|
B:HDD760
|
2.1
|
2.8
|
0.2
|
NB
|
B:HEM755
|
2.1
|
2.2
|
0.2
|
NC
|
B:HDD760
|
2.1
|
4.5
|
0.2
|
NA
|
B:HEM755
|
2.1
|
2.0
|
0.2
|
ND
|
B:HEM754
|
2.2
|
4.8
|
0.2
|
ND
|
B:HDD760
|
2.3
|
3.9
|
0.2
|
NC
|
B:HEM754
|
2.3
|
3.7
|
0.2
|
OH
|
B:TYR415
|
2.5
|
5.9
|
1.0
|
C4A
|
B:HEM754
|
2.9
|
3.1
|
0.2
|
C1C
|
B:HEM755
|
3.0
|
5.7
|
0.2
|
C1B
|
B:HEM754
|
3.0
|
4.8
|
0.2
|
C1A
|
B:HEM754
|
3.0
|
3.7
|
0.2
|
C4B
|
B:HEM754
|
3.0
|
4.2
|
0.2
|
C4C
|
B:HEM755
|
3.0
|
4.9
|
0.2
|
C1D
|
B:HEM755
|
3.0
|
3.2
|
0.2
|
C1B
|
B:HDE761
|
3.0
|
2.8
|
0.2
|
C4A
|
B:HDD760
|
3.0
|
2.0
|
0.2
|
C4B
|
B:HDE761
|
3.0
|
3.4
|
0.2
|
C4B
|
B:HEM755
|
3.0
|
3.9
|
0.2
|
C1C
|
B:HDD760
|
3.0
|
4.3
|
0.2
|
C4C
|
B:HDE761
|
3.0
|
2.9
|
0.2
|
C4D
|
B:HEM754
|
3.0
|
5.5
|
0.2
|
C4D
|
B:HEM755
|
3.1
|
4.8
|
0.2
|
C1B
|
B:HDD760
|
3.1
|
4.8
|
0.2
|
C1C
|
B:HDE761
|
3.1
|
4.6
|
0.2
|
C1A
|
B:HDE761
|
3.1
|
4.9
|
0.2
|
C4B
|
B:HDD760
|
3.1
|
3.7
|
0.2
|
C4D
|
B:HDE761
|
3.1
|
2.0
|
0.2
|
C1A
|
B:HEM755
|
3.1
|
5.5
|
0.2
|
C4C
|
B:HDD760
|
3.1
|
3.7
|
0.2
|
C1A
|
B:HDD760
|
3.1
|
2.8
|
0.2
|
C1D
|
B:HDE761
|
3.1
|
2.0
|
0.2
|
C4A
|
B:HDE761
|
3.1
|
3.4
|
0.2
|
C4A
|
B:HEM755
|
3.2
|
3.5
|
0.2
|
C1B
|
B:HEM755
|
3.2
|
2.7
|
0.2
|
C1C
|
B:HEM754
|
3.2
|
4.2
|
0.2
|
C1D
|
B:HEM754
|
3.3
|
5.0
|
0.2
|
C4D
|
B:HDD760
|
3.3
|
4.3
|
0.2
|
C1D
|
B:HDD760
|
3.3
|
3.0
|
0.2
|
CHC
|
B:HEM755
|
3.3
|
5.1
|
0.2
|
CHB
|
B:HEM754
|
3.4
|
4.1
|
0.2
|
CHA
|
B:HEM754
|
3.4
|
5.3
|
0.2
|
CHD
|
B:HEM755
|
3.4
|
3.5
|
0.2
|
CHC
|
B:HEM754
|
3.4
|
4.8
|
0.2
|
C4C
|
B:HEM754
|
3.4
|
6.3
|
0.2
|
CHC
|
B:HDD760
|
3.4
|
3.9
|
0.2
|
CHC
|
B:HDE761
|
3.4
|
4.0
|
0.2
|
CZ
|
B:TYR415
|
3.4
|
5.9
|
1.0
|
CHB
|
B:HDD760
|
3.4
|
2.7
|
0.2
|
CHA
|
B:HDE761
|
3.5
|
4.7
|
0.2
|
CHB
|
B:HDE761
|
3.5
|
2.0
|
0.2
|
CHA
|
B:HEM755
|
3.5
|
5.1
|
0.2
|
CHD
|
B:HDE761
|
3.5
|
2.0
|
0.2
|
CHD
|
B:HDD760
|
3.6
|
5.7
|
0.2
|
CHA
|
B:HDD760
|
3.6
|
3.3
|
0.2
|
CHB
|
B:HEM755
|
3.6
|
3.6
|
0.2
|
CHD
|
B:HEM754
|
3.8
|
6.6
|
0.2
|
CE1
|
B:TYR415
|
4.1
|
3.7
|
1.0
|
O
|
B:HOH840
|
4.1
|
16.6
|
1.0
|
C3A
|
B:HEM754
|
4.1
|
4.3
|
0.2
|
C2A
|
B:HEM754
|
4.2
|
3.1
|
0.2
|
C2C
|
B:HEM755
|
4.2
|
6.7
|
0.2
|
C3B
|
B:HEM754
|
4.2
|
5.5
|
0.2
|
C2B
|
B:HEM754
|
4.2
|
3.3
|
0.2
|
C3C
|
B:HEM755
|
4.2
|
4.3
|
0.2
|
C2B
|
B:HDE761
|
4.2
|
2.6
|
0.2
|
C3B
|
B:HDE761
|
4.2
|
2.0
|
0.2
|
C2C
|
B:HDD760
|
4.2
|
3.4
|
0.2
|
C3A
|
B:HDD760
|
4.2
|
3.3
|
0.2
|
C2D
|
B:HEM755
|
4.3
|
5.3
|
0.2
|
C2B
|
B:HDD760
|
4.3
|
3.1
|
0.2
|
C3D
|
B:HEM755
|
4.3
|
5.0
|
0.2
|
C3B
|
B:HDD760
|
4.3
|
5.0
|
0.2
|
CG2
|
B:VAL127
|
4.3
|
6.1
|
1.0
|
C3C
|
B:HDD760
|
4.3
|
4.8
|
0.2
|
C3C
|
B:HDE761
|
4.3
|
2.7
|
0.2
|
C2A
|
B:HDD760
|
4.3
|
2.0
|
0.2
|
C2C
|
B:HDE761
|
4.3
|
6.0
|
0.2
|
C3D
|
B:HEM754
|
4.3
|
5.2
|
0.2
|
C3B
|
B:HEM755
|
4.3
|
3.6
|
0.2
|
C2A
|
B:HEM755
|
4.3
|
5.1
|
0.2
|
CE2
|
B:TYR415
|
4.4
|
6.5
|
1.0
|
CZ
|
B:PHE214
|
4.4
|
5.7
|
1.0
|
C2D
|
B:HDE761
|
4.4
|
2.6
|
0.2
|
NE2
|
B:HIS128
|
4.4
|
6.3
|
1.0
|
C3A
|
B:HEM755
|
4.4
|
6.6
|
0.2
|
C2B
|
B:HEM755
|
4.4
|
4.4
|
0.2
|
C3D
|
B:HDE761
|
4.4
|
2.7
|
0.2
|
CD2
|
B:HIS128
|
4.4
|
3.5
|
1.0
|
C2A
|
B:HDE761
|
4.4
|
4.5
|
0.2
|
C2D
|
B:HEM754
|
4.4
|
7.2
|
0.2
|
NE
|
B:ARG411
|
4.5
|
3.9
|
1.0
|
C2C
|
B:HEM754
|
4.5
|
4.2
|
0.2
|
C3A
|
B:HDE761
|
4.5
|
4.3
|
0.2
|
NH2
|
B:ARG411
|
4.6
|
4.6
|
1.0
|
C2D
|
B:HDD760
|
4.6
|
4.1
|
0.2
|
C3D
|
B:HDD760
|
4.6
|
4.2
|
0.2
|
C3C
|
B:HEM754
|
4.6
|
3.4
|
0.2
|
CZ
|
B:ARG411
|
4.9
|
5.9
|
1.0
|
CE1
|
B:PHE214
|
4.9
|
7.2
|
1.0
|
|
Iron binding site 7 out
of 16 in 3p9p
Go back to
Iron Binding Sites List in 3p9p
Iron binding site 7 out
of 16 in the Structure of I274V Variant of E. Coli Kate
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Structure of I274V Variant of E. Coli Kate within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe755
b:6.5
occ:0.25
|
FE
|
B:HEM755
|
0.0
|
6.5
|
0.2
|
FE
|
B:HDD760
|
0.3
|
2.8
|
0.2
|
FE
|
B:HEM754
|
0.3
|
3.1
|
0.2
|
FE
|
B:HDE761
|
0.4
|
12.0
|
0.2
|
NA
|
B:HEM754
|
1.9
|
4.7
|
0.2
|
NA
|
B:HDE761
|
1.9
|
2.0
|
0.2
|
NA
|
B:HEM755
|
2.0
|
2.0
|
0.2
|
ND
|
B:HEM754
|
2.0
|
4.8
|
0.2
|
ND
|
B:HEM755
|
2.0
|
4.1
|
0.2
|
NA
|
B:HDD760
|
2.0
|
5.0
|
0.2
|
NC
|
B:HDD760
|
2.0
|
4.5
|
0.2
|
NB
|
B:HDE761
|
2.1
|
2.1
|
0.2
|
NB
|
B:HEM754
|
2.1
|
3.6
|
0.2
|
NC
|
B:HEM755
|
2.1
|
3.6
|
0.2
|
NB
|
B:HEM755
|
2.1
|
2.2
|
0.2
|
ND
|
B:HDE761
|
2.1
|
2.0
|
0.2
|
ND
|
B:HDD760
|
2.1
|
3.9
|
0.2
|
OH
|
B:TYR415
|
2.1
|
5.9
|
1.0
|
NB
|
B:HDD760
|
2.2
|
2.8
|
0.2
|
NC
|
B:HDE761
|
2.2
|
3.8
|
0.2
|
NC
|
B:HEM754
|
2.3
|
3.7
|
0.2
|
O
|
B:HOH3444
|
2.4
|
28.8
|
1.0
|
C4D
|
B:HEM754
|
2.9
|
5.5
|
0.2
|
C1A
|
B:HEM754
|
2.9
|
3.7
|
0.2
|
C1B
|
B:HDE761
|
2.9
|
2.8
|
0.2
|
C1A
|
B:HDE761
|
3.0
|
4.9
|
0.2
|
C4A
|
B:HEM754
|
3.0
|
3.1
|
0.2
|
C4A
|
B:HDE761
|
3.0
|
3.4
|
0.2
|
C1A
|
B:HEM755
|
3.0
|
5.5
|
0.2
|
C4D
|
B:HEM755
|
3.0
|
4.8
|
0.2
|
C4C
|
B:HDD760
|
3.0
|
3.7
|
0.2
|
C1D
|
B:HEM755
|
3.0
|
3.2
|
0.2
|
C4A
|
B:HEM755
|
3.0
|
3.5
|
0.2
|
C4A
|
B:HDD760
|
3.0
|
2.0
|
0.2
|
CZ
|
B:TYR415
|
3.1
|
5.9
|
1.0
|
C1C
|
B:HDD760
|
3.1
|
4.3
|
0.2
|
C1B
|
B:HEM754
|
3.1
|
4.8
|
0.2
|
C1A
|
B:HDD760
|
3.1
|
2.8
|
0.2
|
C4B
|
B:HEM755
|
3.1
|
3.9
|
0.2
|
C1C
|
B:HEM755
|
3.1
|
5.7
|
0.2
|
C4D
|
B:HDE761
|
3.1
|
2.0
|
0.2
|
C4B
|
B:HDE761
|
3.1
|
3.4
|
0.2
|
C4C
|
B:HEM755
|
3.1
|
4.9
|
0.2
|
C1D
|
B:HEM754
|
3.1
|
5.0
|
0.2
|
C4B
|
B:HEM754
|
3.1
|
4.2
|
0.2
|
C1B
|
B:HEM755
|
3.1
|
2.7
|
0.2
|
C1D
|
B:HDD760
|
3.1
|
3.0
|
0.2
|
C1B
|
B:HDD760
|
3.1
|
4.8
|
0.2
|
C4D
|
B:HDD760
|
3.1
|
4.3
|
0.2
|
C4C
|
B:HDE761
|
3.2
|
2.9
|
0.2
|
C4B
|
B:HDD760
|
3.2
|
3.7
|
0.2
|
C1D
|
B:HDE761
|
3.2
|
2.0
|
0.2
|
C1C
|
B:HDE761
|
3.2
|
4.6
|
0.2
|
C1C
|
B:HEM754
|
3.2
|
4.2
|
0.2
|
CHA
|
B:HEM754
|
3.3
|
5.3
|
0.2
|
C4C
|
B:HEM754
|
3.3
|
6.3
|
0.2
|
CHB
|
B:HDE761
|
3.4
|
2.0
|
0.2
|
CHA
|
B:HDE761
|
3.4
|
4.7
|
0.2
|
CHA
|
B:HEM755
|
3.4
|
5.1
|
0.2
|
CHB
|
B:HEM754
|
3.4
|
4.1
|
0.2
|
CHC
|
B:HEM755
|
3.4
|
5.1
|
0.2
|
CHD
|
B:HDD760
|
3.4
|
5.7
|
0.2
|
CHD
|
B:HEM755
|
3.5
|
3.5
|
0.2
|
CHB
|
B:HEM755
|
3.5
|
3.6
|
0.2
|
CHA
|
B:HDD760
|
3.5
|
3.3
|
0.2
|
CHB
|
B:HDD760
|
3.5
|
2.7
|
0.2
|
CHC
|
B:HEM754
|
3.5
|
4.8
|
0.2
|
CHC
|
B:HDD760
|
3.5
|
3.9
|
0.2
|
CHC
|
B:HDE761
|
3.6
|
4.0
|
0.2
|
CHD
|
B:HDE761
|
3.6
|
2.0
|
0.2
|
CHD
|
B:HEM754
|
3.6
|
6.6
|
0.2
|
CE1
|
B:TYR415
|
3.7
|
3.7
|
1.0
|
CE2
|
B:TYR415
|
4.0
|
6.5
|
1.0
|
C2B
|
B:HDE761
|
4.2
|
2.6
|
0.2
|
C3A
|
B:HEM754
|
4.2
|
4.3
|
0.2
|
C3D
|
B:HEM754
|
4.2
|
5.2
|
0.2
|
C2A
|
B:HEM754
|
4.2
|
3.1
|
0.2
|
C2A
|
B:HEM755
|
4.2
|
5.1
|
0.2
|
C3C
|
B:HDD760
|
4.2
|
4.8
|
0.2
|
C3A
|
B:HEM755
|
4.2
|
6.6
|
0.2
|
C3B
|
B:HDE761
|
4.2
|
2.0
|
0.2
|
C3D
|
B:HEM755
|
4.2
|
5.0
|
0.2
|
C2C
|
B:HDD760
|
4.2
|
3.4
|
0.2
|
NE
|
B:ARG411
|
4.3
|
3.9
|
1.0
|
C2A
|
B:HDE761
|
4.3
|
4.5
|
0.2
|
C3A
|
B:HDD760
|
4.3
|
3.3
|
0.2
|
C2D
|
B:HEM754
|
4.3
|
7.2
|
0.2
|
C2D
|
B:HEM755
|
4.3
|
5.3
|
0.2
|
C2C
|
B:HEM755
|
4.3
|
6.7
|
0.2
|
C2A
|
B:HDD760
|
4.3
|
2.0
|
0.2
|
C2B
|
B:HEM754
|
4.3
|
3.3
|
0.2
|
C3C
|
B:HEM755
|
4.3
|
4.3
|
0.2
|
C3B
|
B:HEM754
|
4.3
|
5.5
|
0.2
|
C3B
|
B:HEM755
|
4.3
|
3.6
|
0.2
|
C3A
|
B:HDE761
|
4.3
|
4.3
|
0.2
|
C2B
|
B:HEM755
|
4.3
|
4.4
|
0.2
|
NH2
|
B:ARG411
|
4.3
|
4.6
|
1.0
|
C2B
|
B:HDD760
|
4.4
|
3.1
|
0.2
|
C3C
|
B:HDE761
|
4.4
|
2.7
|
0.2
|
C3B
|
B:HDD760
|
4.4
|
5.0
|
0.2
|
C3D
|
B:HDE761
|
4.4
|
2.7
|
0.2
|
C2D
|
B:HDE761
|
4.4
|
2.6
|
0.2
|
C2C
|
B:HDE761
|
4.4
|
6.0
|
0.2
|
C2D
|
B:HDD760
|
4.4
|
4.1
|
0.2
|
C3D
|
B:HDD760
|
4.4
|
4.2
|
0.2
|
O
|
B:HOH840
|
4.5
|
16.6
|
1.0
|
C2C
|
B:HEM754
|
4.5
|
4.2
|
0.2
|
CG2
|
B:VAL127
|
4.5
|
6.1
|
1.0
|
C3C
|
B:HEM754
|
4.5
|
3.4
|
0.2
|
CZ
|
B:PHE214
|
4.6
|
5.7
|
1.0
|
CD2
|
B:HIS128
|
4.7
|
3.5
|
1.0
|
NE2
|
B:HIS128
|
4.7
|
6.3
|
1.0
|
CZ
|
B:ARG411
|
4.7
|
5.9
|
1.0
|
|
Iron binding site 8 out
of 16 in 3p9p
Go back to
Iron Binding Sites List in 3p9p
Iron binding site 8 out
of 16 in the Structure of I274V Variant of E. Coli Kate
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Structure of I274V Variant of E. Coli Kate within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe760
b:2.8
occ:0.25
|
FE
|
B:HDD760
|
0.0
|
2.8
|
0.2
|
FE
|
B:HEM754
|
0.2
|
3.1
|
0.2
|
FE
|
B:HEM755
|
0.3
|
6.5
|
0.2
|
FE
|
B:HDE761
|
0.6
|
12.0
|
0.2
|
OH
|
B:TYR415
|
1.9
|
5.9
|
1.0
|
NA
|
B:HEM754
|
1.9
|
4.7
|
0.2
|
ND
|
B:HEM755
|
2.0
|
4.1
|
0.2
|
NA
|
B:HDD760
|
2.0
|
5.0
|
0.2
|
ND
|
B:HEM754
|
2.0
|
4.8
|
0.2
|
NB
|
B:HEM754
|
2.0
|
3.6
|
0.2
|
NA
|
B:HDE761
|
2.0
|
2.0
|
0.2
|
NA
|
B:HEM755
|
2.0
|
2.0
|
0.2
|
NC
|
B:HDD760
|
2.1
|
4.5
|
0.2
|
NC
|
B:HEM755
|
2.1
|
3.6
|
0.2
|
NB
|
B:HDD760
|
2.1
|
2.8
|
0.2
|
NB
|
B:HEM755
|
2.1
|
2.2
|
0.2
|
NB
|
B:HDE761
|
2.1
|
2.1
|
0.2
|
ND
|
B:HDE761
|
2.1
|
2.0
|
0.2
|
ND
|
B:HDD760
|
2.2
|
3.9
|
0.2
|
NC
|
B:HDE761
|
2.2
|
3.8
|
0.2
|
NC
|
B:HEM754
|
2.3
|
3.7
|
0.2
|
O
|
B:HOH3444
|
2.6
|
28.8
|
1.0
|
CZ
|
B:TYR415
|
2.8
|
5.9
|
1.0
|
C4A
|
B:HEM754
|
2.9
|
3.1
|
0.2
|
C4D
|
B:HEM754
|
3.0
|
5.5
|
0.2
|
C1A
|
B:HEM754
|
3.0
|
3.7
|
0.2
|
C1B
|
B:HDE761
|
3.0
|
2.8
|
0.2
|
C1B
|
B:HEM754
|
3.0
|
4.8
|
0.2
|
C1A
|
B:HDE761
|
3.0
|
4.9
|
0.2
|
C4A
|
B:HDD760
|
3.0
|
2.0
|
0.2
|
C1D
|
B:HEM755
|
3.0
|
3.2
|
0.2
|
C4D
|
B:HEM755
|
3.0
|
4.8
|
0.2
|
C4A
|
B:HDE761
|
3.0
|
3.4
|
0.2
|
C1C
|
B:HEM755
|
3.0
|
5.7
|
0.2
|
C4C
|
B:HEM755
|
3.0
|
4.9
|
0.2
|
C1A
|
B:HEM755
|
3.0
|
5.5
|
0.2
|
C4C
|
B:HDD760
|
3.1
|
3.7
|
0.2
|
C1C
|
B:HDD760
|
3.1
|
4.3
|
0.2
|
C4B
|
B:HEM754
|
3.1
|
4.2
|
0.2
|
C1A
|
B:HDD760
|
3.1
|
2.8
|
0.2
|
C4B
|
B:HEM755
|
3.1
|
3.9
|
0.2
|
C1B
|
B:HDD760
|
3.1
|
4.8
|
0.2
|
C4A
|
B:HEM755
|
3.1
|
3.5
|
0.2
|
C4D
|
B:HDE761
|
3.1
|
2.0
|
0.2
|
C4B
|
B:HDE761
|
3.1
|
3.4
|
0.2
|
C4C
|
B:HDE761
|
3.1
|
2.9
|
0.2
|
C1D
|
B:HEM754
|
3.1
|
5.0
|
0.2
|
C4B
|
B:HDD760
|
3.1
|
3.7
|
0.2
|
C1B
|
B:HEM755
|
3.2
|
2.7
|
0.2
|
C1D
|
B:HDE761
|
3.2
|
2.0
|
0.2
|
C1D
|
B:HDD760
|
3.2
|
3.0
|
0.2
|
C1C
|
B:HDE761
|
3.2
|
4.6
|
0.2
|
C4D
|
B:HDD760
|
3.2
|
4.3
|
0.2
|
C1C
|
B:HEM754
|
3.2
|
4.2
|
0.2
|
C4C
|
B:HEM754
|
3.3
|
6.3
|
0.2
|
CHA
|
B:HEM754
|
3.3
|
5.3
|
0.2
|
CHB
|
B:HEM754
|
3.3
|
4.1
|
0.2
|
CHB
|
B:HDE761
|
3.4
|
2.0
|
0.2
|
CHD
|
B:HEM755
|
3.4
|
3.5
|
0.2
|
CHB
|
B:HDD760
|
3.4
|
2.7
|
0.2
|
CHC
|
B:HEM755
|
3.4
|
5.1
|
0.2
|
CHA
|
B:HEM755
|
3.4
|
5.1
|
0.2
|
CHA
|
B:HDE761
|
3.5
|
4.7
|
0.2
|
CHD
|
B:HDD760
|
3.5
|
5.7
|
0.2
|
CHC
|
B:HDD760
|
3.5
|
3.9
|
0.2
|
CHC
|
B:HEM754
|
3.5
|
4.8
|
0.2
|
CHA
|
B:HDD760
|
3.5
|
3.3
|
0.2
|
CHB
|
B:HEM755
|
3.5
|
3.6
|
0.2
|
CE1
|
B:TYR415
|
3.5
|
3.7
|
1.0
|
CHD
|
B:HDE761
|
3.6
|
2.0
|
0.2
|
CHC
|
B:HDE761
|
3.6
|
4.0
|
0.2
|
CHD
|
B:HEM754
|
3.6
|
6.6
|
0.2
|
CE2
|
B:TYR415
|
3.8
|
6.5
|
1.0
|
NE
|
B:ARG411
|
4.0
|
3.9
|
1.0
|
NH2
|
B:ARG411
|
4.1
|
4.6
|
1.0
|
C3A
|
B:HEM754
|
4.1
|
4.3
|
0.2
|
C2B
|
B:HDE761
|
4.2
|
2.6
|
0.2
|
C2A
|
B:HEM754
|
4.2
|
3.1
|
0.2
|
C2C
|
B:HEM755
|
4.2
|
6.7
|
0.2
|
C3D
|
B:HEM754
|
4.2
|
5.2
|
0.2
|
C3C
|
B:HEM755
|
4.2
|
4.3
|
0.2
|
C2B
|
B:HEM754
|
4.2
|
3.3
|
0.2
|
C3B
|
B:HDE761
|
4.2
|
2.0
|
0.2
|
C3D
|
B:HEM755
|
4.2
|
5.0
|
0.2
|
C3A
|
B:HDD760
|
4.2
|
3.3
|
0.2
|
C2D
|
B:HEM755
|
4.2
|
5.3
|
0.2
|
C3B
|
B:HEM754
|
4.2
|
5.5
|
0.2
|
C3C
|
B:HDD760
|
4.3
|
4.8
|
0.2
|
C2C
|
B:HDD760
|
4.3
|
3.4
|
0.2
|
C2A
|
B:HEM755
|
4.3
|
5.1
|
0.2
|
C2A
|
B:HDD760
|
4.3
|
2.0
|
0.2
|
C3A
|
B:HEM755
|
4.3
|
6.6
|
0.2
|
C2A
|
B:HDE761
|
4.3
|
4.5
|
0.2
|
C2D
|
B:HEM754
|
4.3
|
7.2
|
0.2
|
C2B
|
B:HDD760
|
4.3
|
3.1
|
0.2
|
C3C
|
B:HDE761
|
4.3
|
2.7
|
0.2
|
C3B
|
B:HEM755
|
4.3
|
3.6
|
0.2
|
C3A
|
B:HDE761
|
4.3
|
4.3
|
0.2
|
C3B
|
B:HDD760
|
4.3
|
5.0
|
0.2
|
C2C
|
B:HDE761
|
4.4
|
6.0
|
0.2
|
C2B
|
B:HEM755
|
4.4
|
4.4
|
0.2
|
C2D
|
B:HDE761
|
4.4
|
2.6
|
0.2
|
C3D
|
B:HDE761
|
4.4
|
2.7
|
0.2
|
C2D
|
B:HDD760
|
4.4
|
4.1
|
0.2
|
C3D
|
B:HDD760
|
4.5
|
4.2
|
0.2
|
CZ
|
B:ARG411
|
4.5
|
5.9
|
1.0
|
C2C
|
B:HEM754
|
4.5
|
4.2
|
0.2
|
C3C
|
B:HEM754
|
4.5
|
3.4
|
0.2
|
O
|
B:HOH840
|
4.6
|
16.6
|
1.0
|
CG2
|
B:VAL127
|
4.7
|
6.1
|
1.0
|
CD1
|
B:TYR415
|
4.8
|
2.9
|
1.0
|
CZ
|
B:PHE214
|
4.8
|
5.7
|
1.0
|
NE2
|
B:HIS128
|
4.8
|
6.3
|
1.0
|
CD2
|
B:HIS128
|
4.8
|
3.5
|
1.0
|
|
Iron binding site 9 out
of 16 in 3p9p
Go back to
Iron Binding Sites List in 3p9p
Iron binding site 9 out
of 16 in the Structure of I274V Variant of E. Coli Kate
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Structure of I274V Variant of E. Coli Kate within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe754
b:2.8
occ:0.25
|
FE
|
C:HEM754
|
0.0
|
2.8
|
0.2
|
FE
|
C:HDD760
|
0.1
|
2.5
|
0.2
|
FE
|
C:HEM755
|
0.3
|
7.8
|
0.2
|
FE
|
C:HDE761
|
0.5
|
12.5
|
0.2
|
OH
|
C:TYR415
|
1.9
|
5.6
|
1.0
|
NA
|
C:HDE761
|
1.9
|
2.1
|
0.2
|
NC
|
C:HDD760
|
2.0
|
3.5
|
0.2
|
NA
|
C:HEM754
|
2.0
|
5.3
|
0.2
|
ND
|
C:HEM754
|
2.0
|
4.8
|
0.2
|
NA
|
C:HEM755
|
2.0
|
2.9
|
0.2
|
NA
|
C:HDD760
|
2.0
|
2.4
|
0.2
|
NB
|
C:HEM755
|
2.1
|
2.0
|
0.2
|
NB
|
C:HDE761
|
2.1
|
2.4
|
0.2
|
ND
|
C:HEM755
|
2.1
|
2.0
|
0.2
|
NC
|
C:HEM755
|
2.1
|
4.8
|
0.2
|
NC
|
C:HEM754
|
2.1
|
3.3
|
0.2
|
ND
|
C:HDD760
|
2.1
|
3.5
|
0.2
|
NB
|
C:HEM754
|
2.1
|
4.1
|
0.2
|
ND
|
C:HDE761
|
2.2
|
3.8
|
0.2
|
NB
|
C:HDD760
|
2.2
|
2.9
|
0.2
|
NC
|
C:HDE761
|
2.2
|
3.4
|
0.2
|
O
|
C:HOH3362
|
2.7
|
27.6
|
1.0
|
CZ
|
C:TYR415
|
2.8
|
4.5
|
1.0
|
C4C
|
C:HDD760
|
2.9
|
3.6
|
0.2
|
C1B
|
C:HDE761
|
3.0
|
2.2
|
0.2
|
C4A
|
C:HDE761
|
3.0
|
2.7
|
0.2
|
C1A
|
C:HDE761
|
3.0
|
2.0
|
0.2
|
C4D
|
C:HEM754
|
3.0
|
3.8
|
0.2
|
C4B
|
C:HEM755
|
3.0
|
4.4
|
0.2
|
C1A
|
C:HEM754
|
3.0
|
5.4
|
0.2
|
C4A
|
C:HEM754
|
3.0
|
3.9
|
0.2
|
C1A
|
C:HEM755
|
3.0
|
3.8
|
0.2
|
C4D
|
C:HEM755
|
3.1
|
5.6
|
0.2
|
C1D
|
C:HDD760
|
3.1
|
2.0
|
0.2
|
C1D
|
C:HEM754
|
3.1
|
3.4
|
0.2
|
C1A
|
C:HDD760
|
3.1
|
4.3
|
0.2
|
C1B
|
C:HEM755
|
3.1
|
2.0
|
0.2
|
C4D
|
C:HDE761
|
3.1
|
5.8
|
0.2
|
C4B
|
C:HDE761
|
3.1
|
3.6
|
0.2
|
C1C
|
C:HDD760
|
3.1
|
4.5
|
0.2
|
C1C
|
C:HEM755
|
3.1
|
4.4
|
0.2
|
C4C
|
C:HEM754
|
3.1
|
3.3
|
0.2
|
C4A
|
C:HDD760
|
3.1
|
2.8
|
0.2
|
C4A
|
C:HEM755
|
3.1
|
2.7
|
0.2
|
C4C
|
C:HEM755
|
3.1
|
3.8
|
0.2
|
C1C
|
C:HEM754
|
3.1
|
3.0
|
0.2
|
C1D
|
C:HEM755
|
3.1
|
3.8
|
0.2
|
C1B
|
C:HEM754
|
3.2
|
4.3
|
0.2
|
C4B
|
C:HEM754
|
3.2
|
2.9
|
0.2
|
C4D
|
C:HDD760
|
3.2
|
2.9
|
0.2
|
C4C
|
C:HDE761
|
3.2
|
3.0
|
0.2
|
C1B
|
C:HDD760
|
3.2
|
3.6
|
0.2
|
C1C
|
C:HDE761
|
3.2
|
2.0
|
0.2
|
C4B
|
C:HDD760
|
3.2
|
2.0
|
0.2
|
C1D
|
C:HDE761
|
3.2
|
4.6
|
0.2
|
CHD
|
C:HDD760
|
3.3
|
3.5
|
0.2
|
CHB
|
C:HDE761
|
3.4
|
2.1
|
0.2
|
CHA
|
C:HDE761
|
3.4
|
5.3
|
0.2
|
CHA
|
C:HEM754
|
3.4
|
5.0
|
0.2
|
CHA
|
C:HEM755
|
3.4
|
4.9
|
0.2
|
CHD
|
C:HEM754
|
3.4
|
5.1
|
0.2
|
CHC
|
C:HEM755
|
3.4
|
6.7
|
0.2
|
CHB
|
C:HEM754
|
3.5
|
5.3
|
0.2
|
CE1
|
C:TYR415
|
3.5
|
5.3
|
1.0
|
CHA
|
C:HDD760
|
3.5
|
3.6
|
0.2
|
CHB
|
C:HEM755
|
3.5
|
2.5
|
0.2
|
CHD
|
C:HEM755
|
3.5
|
2.0
|
0.2
|
CHC
|
C:HDE761
|
3.5
|
3.1
|
0.2
|
CHB
|
C:HDD760
|
3.5
|
2.7
|
0.2
|
CHC
|
C:HEM754
|
3.5
|
4.9
|
0.2
|
CHC
|
C:HDD760
|
3.6
|
3.2
|
0.2
|
CHD
|
C:HDE761
|
3.6
|
2.0
|
0.2
|
CE2
|
C:TYR415
|
3.7
|
5.2
|
1.0
|
NE
|
C:ARG411
|
4.0
|
2.9
|
1.0
|
NH2
|
C:ARG411
|
4.1
|
3.5
|
1.0
|
C2B
|
C:HDE761
|
4.1
|
2.1
|
0.2
|
C3C
|
C:HDD760
|
4.2
|
4.9
|
0.2
|
C3B
|
C:HEM755
|
4.2
|
6.1
|
0.2
|
C3B
|
C:HDE761
|
4.2
|
2.0
|
0.2
|
C3A
|
C:HEM754
|
4.2
|
4.4
|
0.2
|
C2B
|
C:HEM755
|
4.2
|
6.0
|
0.2
|
C2C
|
C:HDD760
|
4.2
|
4.4
|
0.2
|
C2A
|
C:HEM754
|
4.2
|
4.4
|
0.2
|
C3D
|
C:HEM754
|
4.3
|
6.3
|
0.2
|
C2A
|
C:HEM755
|
4.3
|
6.0
|
0.2
|
C2D
|
C:HEM754
|
4.3
|
4.3
|
0.2
|
C3C
|
C:HEM755
|
4.3
|
6.2
|
0.2
|
C2C
|
C:HEM755
|
4.3
|
6.5
|
0.2
|
C3A
|
C:HEM755
|
4.3
|
3.9
|
0.2
|
C3A
|
C:HDE761
|
4.3
|
3.8
|
0.2
|
C2A
|
C:HDD760
|
4.3
|
3.1
|
0.2
|
C3A
|
C:HDD760
|
4.3
|
2.6
|
0.2
|
C3D
|
C:HEM755
|
4.3
|
4.6
|
0.2
|
C2A
|
C:HDE761
|
4.3
|
2.0
|
0.2
|
C3C
|
C:HEM754
|
4.3
|
5.8
|
0.2
|
C2C
|
C:HEM754
|
4.3
|
5.4
|
0.2
|
C2D
|
C:HEM755
|
4.3
|
3.7
|
0.2
|
C2D
|
C:HDD760
|
4.4
|
3.0
|
0.2
|
C3B
|
C:HEM754
|
4.4
|
4.8
|
0.2
|
C2B
|
C:HEM754
|
4.4
|
4.0
|
0.2
|
C3C
|
C:HDE761
|
4.4
|
3.4
|
0.2
|
C3D
|
C:HDE761
|
4.4
|
4.1
|
0.2
|
C2C
|
C:HDE761
|
4.4
|
3.6
|
0.2
|
C3B
|
C:HDD760
|
4.4
|
4.3
|
0.2
|
C2B
|
C:HDD760
|
4.4
|
5.2
|
0.2
|
C3D
|
C:HDD760
|
4.4
|
3.2
|
0.2
|
C2D
|
C:HDE761
|
4.4
|
2.7
|
0.2
|
CZ
|
C:ARG411
|
4.5
|
6.3
|
1.0
|
O
|
C:HOH1263
|
4.6
|
13.9
|
1.0
|
CG2
|
C:VAL127
|
4.7
|
3.9
|
1.0
|
CZ
|
C:PHE214
|
4.7
|
7.6
|
1.0
|
CD1
|
C:TYR415
|
4.8
|
3.7
|
1.0
|
NE2
|
C:HIS128
|
4.9
|
5.8
|
1.0
|
CD2
|
C:HIS128
|
4.9
|
4.2
|
1.0
|
CD2
|
C:TYR415
|
5.0
|
4.3
|
1.0
|
CD
|
C:ARG411
|
5.0
|
3.1
|
1.0
|
|
Iron binding site 10 out
of 16 in 3p9p
Go back to
Iron Binding Sites List in 3p9p
Iron binding site 10 out
of 16 in the Structure of I274V Variant of E. Coli Kate
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Structure of I274V Variant of E. Coli Kate within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe761
b:12.5
occ:0.25
|
FE
|
C:HDE761
|
0.0
|
12.5
|
0.2
|
FE
|
C:HEM755
|
0.3
|
7.8
|
0.2
|
FE
|
C:HDD760
|
0.5
|
2.5
|
0.2
|
FE
|
C:HEM754
|
0.5
|
2.8
|
0.2
|
NC
|
C:HEM755
|
1.9
|
4.8
|
0.2
|
ND
|
C:HEM755
|
2.0
|
2.0
|
0.2
|
NA
|
C:HEM754
|
2.0
|
5.3
|
0.2
|
NA
|
C:HDD760
|
2.0
|
2.4
|
0.2
|
NA
|
C:HDE761
|
2.0
|
2.1
|
0.2
|
NB
|
C:HDE761
|
2.0
|
2.4
|
0.2
|
NC
|
C:HDE761
|
2.0
|
3.4
|
0.2
|
ND
|
C:HDE761
|
2.1
|
3.8
|
0.2
|
NB
|
C:HEM754
|
2.1
|
4.1
|
0.2
|
NC
|
C:HDD760
|
2.1
|
3.5
|
0.2
|
NB
|
C:HEM755
|
2.1
|
2.0
|
0.2
|
NA
|
C:HEM755
|
2.1
|
2.9
|
0.2
|
NB
|
C:HDD760
|
2.1
|
2.9
|
0.2
|
ND
|
C:HEM754
|
2.2
|
4.8
|
0.2
|
O
|
C:HOH3362
|
2.2
|
27.6
|
1.0
|
NC
|
C:HEM754
|
2.2
|
3.3
|
0.2
|
ND
|
C:HDD760
|
2.2
|
3.5
|
0.2
|
OH
|
C:TYR415
|
2.4
|
5.6
|
1.0
|
C4A
|
C:HEM754
|
3.0
|
3.9
|
0.2
|
C4C
|
C:HEM755
|
3.0
|
3.8
|
0.2
|
C1C
|
C:HEM755
|
3.0
|
4.4
|
0.2
|
C1A
|
C:HEM754
|
3.0
|
5.4
|
0.2
|
C4D
|
C:HEM755
|
3.0
|
5.6
|
0.2
|
C4A
|
C:HDD760
|
3.0
|
2.8
|
0.2
|
C1D
|
C:HEM755
|
3.0
|
3.8
|
0.2
|
C4B
|
C:HDE761
|
3.0
|
3.6
|
0.2
|
C4D
|
C:HDE761
|
3.0
|
5.8
|
0.2
|
C4B
|
C:HEM755
|
3.0
|
4.4
|
0.2
|
C1A
|
C:HDD760
|
3.0
|
4.3
|
0.2
|
C1A
|
C:HDE761
|
3.1
|
2.0
|
0.2
|
C4C
|
C:HDD760
|
3.1
|
3.6
|
0.2
|
C1B
|
C:HDE761
|
3.1
|
2.2
|
0.2
|
C1C
|
C:HDE761
|
3.1
|
2.0
|
0.2
|
C4C
|
C:HDE761
|
3.1
|
3.0
|
0.2
|
C1B
|
C:HEM754
|
3.1
|
4.3
|
0.2
|
C4D
|
C:HEM754
|
3.1
|
3.8
|
0.2
|
C4B
|
C:HEM754
|
3.1
|
2.9
|
0.2
|
C1A
|
C:HEM755
|
3.1
|
3.8
|
0.2
|
C1C
|
C:HDD760
|
3.1
|
4.5
|
0.2
|
C1B
|
C:HDD760
|
3.1
|
3.6
|
0.2
|
C4A
|
C:HDE761
|
3.1
|
2.7
|
0.2
|
C4B
|
C:HDD760
|
3.1
|
2.0
|
0.2
|
C1C
|
C:HEM754
|
3.2
|
3.0
|
0.2
|
C1D
|
C:HDE761
|
3.2
|
4.6
|
0.2
|
C1B
|
C:HEM755
|
3.2
|
2.0
|
0.2
|
C1D
|
C:HEM754
|
3.2
|
3.4
|
0.2
|
C4A
|
C:HEM755
|
3.2
|
2.7
|
0.2
|
C4C
|
C:HEM754
|
3.2
|
3.3
|
0.2
|
C1D
|
C:HDD760
|
3.2
|
2.0
|
0.2
|
C4D
|
C:HDD760
|
3.3
|
2.9
|
0.2
|
CHA
|
C:HDE761
|
3.4
|
5.3
|
0.2
|
CHC
|
C:HDE761
|
3.4
|
3.1
|
0.2
|
CHD
|
C:HEM755
|
3.4
|
2.0
|
0.2
|
CHC
|
C:HEM755
|
3.4
|
6.7
|
0.2
|
CZ
|
C:TYR415
|
3.4
|
4.5
|
1.0
|
CHA
|
C:HEM754
|
3.4
|
5.0
|
0.2
|
CHB
|
C:HEM754
|
3.4
|
5.3
|
0.2
|
CHA
|
C:HEM755
|
3.4
|
4.9
|
0.2
|
CHB
|
C:HDD760
|
3.4
|
2.7
|
0.2
|
CHD
|
C:HDD760
|
3.5
|
3.5
|
0.2
|
CHC
|
C:HEM754
|
3.5
|
4.9
|
0.2
|
CHA
|
C:HDD760
|
3.5
|
3.6
|
0.2
|
CHB
|
C:HDE761
|
3.5
|
2.1
|
0.2
|
CHC
|
C:HDD760
|
3.5
|
3.2
|
0.2
|
CHD
|
C:HDE761
|
3.5
|
2.0
|
0.2
|
CHD
|
C:HEM754
|
3.6
|
5.1
|
0.2
|
CHB
|
C:HEM755
|
3.6
|
2.5
|
0.2
|
CE1
|
C:TYR415
|
4.0
|
5.3
|
1.0
|
C3A
|
C:HEM754
|
4.2
|
4.4
|
0.2
|
O
|
C:HOH1263
|
4.2
|
13.9
|
1.0
|
C2A
|
C:HEM754
|
4.2
|
4.4
|
0.2
|
C3C
|
C:HEM755
|
4.2
|
6.2
|
0.2
|
C2C
|
C:HEM755
|
4.2
|
6.5
|
0.2
|
C3A
|
C:HDD760
|
4.2
|
2.6
|
0.2
|
C3B
|
C:HDE761
|
4.2
|
2.0
|
0.2
|
C2A
|
C:HDD760
|
4.2
|
3.1
|
0.2
|
C3D
|
C:HEM755
|
4.2
|
4.6
|
0.2
|
C2D
|
C:HEM755
|
4.2
|
3.7
|
0.2
|
C2B
|
C:HDE761
|
4.2
|
2.1
|
0.2
|
C3C
|
C:HDD760
|
4.3
|
4.9
|
0.2
|
C3B
|
C:HEM755
|
4.3
|
6.1
|
0.2
|
CE2
|
C:TYR415
|
4.3
|
5.2
|
1.0
|
C2C
|
C:HDD760
|
4.3
|
4.4
|
0.2
|
C3B
|
C:HEM754
|
4.3
|
4.8
|
0.2
|
C2B
|
C:HEM754
|
4.3
|
4.0
|
0.2
|
C3C
|
C:HDE761
|
4.3
|
3.4
|
0.2
|
C2C
|
C:HDE761
|
4.3
|
3.6
|
0.2
|
C3B
|
C:HDD760
|
4.3
|
4.3
|
0.2
|
C2B
|
C:HDD760
|
4.3
|
5.2
|
0.2
|
C3D
|
C:HEM754
|
4.3
|
6.3
|
0.2
|
C2B
|
C:HEM755
|
4.3
|
6.0
|
0.2
|
C3D
|
C:HDE761
|
4.3
|
4.1
|
0.2
|
C2A
|
C:HEM755
|
4.4
|
6.0
|
0.2
|
CG2
|
C:VAL127
|
4.4
|
3.9
|
1.0
|
NE
|
C:ARG411
|
4.4
|
2.9
|
1.0
|
C2D
|
C:HDE761
|
4.4
|
2.7
|
0.2
|
C2C
|
C:HEM754
|
4.4
|
5.4
|
0.2
|
CZ
|
C:PHE214
|
4.4
|
7.6
|
1.0
|
C2D
|
C:HEM754
|
4.4
|
4.3
|
0.2
|
C3A
|
C:HEM755
|
4.4
|
3.9
|
0.2
|
C3C
|
C:HEM754
|
4.4
|
5.8
|
0.2
|
C2A
|
C:HDE761
|
4.4
|
2.0
|
0.2
|
NH2
|
C:ARG411
|
4.4
|
3.5
|
1.0
|
NE2
|
C:HIS128
|
4.5
|
5.8
|
1.0
|
C3A
|
C:HDE761
|
4.5
|
3.8
|
0.2
|
CD2
|
C:HIS128
|
4.5
|
4.2
|
1.0
|
C2D
|
C:HDD760
|
4.5
|
3.0
|
0.2
|
C3D
|
C:HDD760
|
4.6
|
3.2
|
0.2
|
CZ
|
C:ARG411
|
4.8
|
6.3
|
1.0
|
CE1
|
C:PHE214
|
4.9
|
4.1
|
1.0
|
|
Reference:
V.Jha,
S.Louis,
P.Chelikani,
X.Carpena,
L.J.Donald,
I.Fita,
P.C.Loewen.
Modulation of Heme Orientation and Binding By A Single Residue in Catalase Hpii of Escherichia Coli. Biochemistry V. 50 2101 2011.
ISSN: ISSN 0006-2960
PubMed: 21332158
DOI: 10.1021/BI200027V
Page generated: Sun Aug 4 17:42:11 2024
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