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Iron in PDB 3pm0: Structural Characterization of the Complex Between Alpha- Naphthoflavone and Human Cytochrome P450 1B1 (CYP1B1)

Enzymatic activity of Structural Characterization of the Complex Between Alpha- Naphthoflavone and Human Cytochrome P450 1B1 (CYP1B1)

All present enzymatic activity of Structural Characterization of the Complex Between Alpha- Naphthoflavone and Human Cytochrome P450 1B1 (CYP1B1):
1.14.14.1;

Protein crystallography data

The structure of Structural Characterization of the Complex Between Alpha- Naphthoflavone and Human Cytochrome P450 1B1 (CYP1B1), PDB code: 3pm0 was solved by A.Wang, C.D.Stout, E.F.Johnson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 65.50 / 2.70
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 84.170, 103.980, 62.970, 90.00, 90.00, 90.00
R / Rfree (%) 23.5 / 27.8

Iron Binding Sites:

The binding sites of Iron atom in the Structural Characterization of the Complex Between Alpha- Naphthoflavone and Human Cytochrome P450 1B1 (CYP1B1) (pdb code 3pm0). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Structural Characterization of the Complex Between Alpha- Naphthoflavone and Human Cytochrome P450 1B1 (CYP1B1), PDB code: 3pm0:

Iron binding site 1 out of 1 in 3pm0

Go back to Iron Binding Sites List in 3pm0
Iron binding site 1 out of 1 in the Structural Characterization of the Complex Between Alpha- Naphthoflavone and Human Cytochrome P450 1B1 (CYP1B1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structural Characterization of the Complex Between Alpha- Naphthoflavone and Human Cytochrome P450 1B1 (CYP1B1) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe900

b:28.2
occ:1.00
 FE A:HEM900 0.0 28.2 1.0
ND A:HEM900 2.0 26.9 1.0
NC A:HEM900 2.1 27.9 1.0
NA A:HEM900 2.1 28.5 1.0
NB A:HEM900 2.1 26.3 1.0
SG A:CYS470 2.4 31.5 1.0
C4D A:HEM900 3.0 27.0 1.0
C1D A:HEM900 3.0 28.8 1.0
C1C A:HEM900 3.0 27.3 1.0
C4A A:HEM900 3.0 28.9 1.0
C4B A:HEM900 3.0 28.1 1.0
C1B A:HEM900 3.1 26.8 1.0
C4C A:HEM900 3.1 26.9 1.0
C1A A:HEM900 3.1 29.2 1.0
CHA A:HEM900 3.3 28.0 1.0
CHC A:HEM900 3.3 27.6 1.0
CHB A:HEM900 3.3 26.6 1.0
CHD A:HEM900 3.3 27.5 1.0
CB A:CYS470 3.4 31.6 1.0
CA A:CYS470 4.1 34.0 1.0
C3D A:HEM900 4.2 25.9 1.0
C2D A:HEM900 4.2 27.5 1.0
C2C A:HEM900 4.2 26.1 1.0
C3A A:HEM900 4.3 28.4 1.0
C3C A:HEM900 4.3 25.9 1.0
C2A A:HEM900 4.3 30.0 1.0
C3B A:HEM900 4.3 28.6 1.0
C3 A:BHF800 4.3 39.6 1.0
C2B A:HEM900 4.3 28.8 1.0
C4 A:BHF800 4.6 39.5 1.0
CB A:ALA330 4.7 32.6 1.0
N A:ILE471 4.8 33.6 1.0
CG2 A:THR334 4.9 34.0 1.0
C A:CYS470 4.9 33.9 1.0

Reference:

A.Wang, U.Savas, C.D.Stout, E.F.Johnson. Structural Characterization of the Complex Between {Alpha}-Naphthoflavone and Human Cytochrome P450 1B1. J.Biol.Chem. V. 286 5736 2011.
ISSN: ISSN 0021-9258
PubMed: 21147782
DOI: 10.1074/JBC.M110.204420
Page generated: Tue Aug 5 05:45:52 2025

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