Iron in PDB 3pmq: Crystal Structure of the Outer Membrane Decaheme Cytochrome Mtrf
Protein crystallography data
The structure of Crystal Structure of the Outer Membrane Decaheme Cytochrome Mtrf, PDB code: 3pmq
was solved by
T.A.Clarke,
M.J.Edwards,
D.J.Richardson,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
40.00 /
3.20
|
|
Space group
|
I 2 3
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
256.640,
256.640,
256.640,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
30.5 /
32.1
|
Other elements in 3pmq:
The structure of Crystal Structure of the Outer Membrane Decaheme Cytochrome Mtrf also contains other interesting chemical elements:
Iron Binding Sites:
The binding sites of Iron atom in the Crystal Structure of the Outer Membrane Decaheme Cytochrome Mtrf
(pdb code 3pmq). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 10 binding sites of Iron where determined in the
Crystal Structure of the Outer Membrane Decaheme Cytochrome Mtrf, PDB code: 3pmq:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 10 in 3pmq
Go back to
Iron Binding Sites List in 3pmq
Iron binding site 1 out
of 10 in the Crystal Structure of the Outer Membrane Decaheme Cytochrome Mtrf
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Crystal Structure of the Outer Membrane Decaheme Cytochrome Mtrf within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe670
b:81.3
occ:1.00
|
FE
|
A:HEC670
|
0.0
|
81.3
|
1.0
|
|
NA
|
A:HEC670
|
2.0
|
76.2
|
1.0
|
|
NB
|
A:HEC670
|
2.1
|
83.6
|
1.0
|
|
ND
|
A:HEC670
|
2.1
|
81.4
|
1.0
|
|
NC
|
A:HEC670
|
2.1
|
0.4
|
1.0
|
|
NE2
|
A:HIS238
|
2.1
|
88.1
|
1.0
|
|
NE2
|
A:HIS198
|
2.1
|
89.9
|
1.0
|
|
CE1
|
A:HIS238
|
2.8
|
91.3
|
1.0
|
|
CE1
|
A:HIS198
|
2.9
|
85.7
|
1.0
|
|
C1A
|
A:HEC670
|
3.0
|
91.4
|
1.0
|
|
C4A
|
A:HEC670
|
3.1
|
84.9
|
1.0
|
|
C4D
|
A:HEC670
|
3.1
|
91.7
|
1.0
|
|
C1D
|
A:HEC670
|
3.1
|
92.7
|
1.0
|
|
C1B
|
A:HEC670
|
3.1
|
98.9
|
1.0
|
|
C4C
|
A:HEC670
|
3.1
|
94.9
|
1.0
|
|
CD2
|
A:HIS238
|
3.1
|
86.2
|
1.0
|
|
C4B
|
A:HEC670
|
3.1
|
76.5
|
1.0
|
|
C1C
|
A:HEC670
|
3.1
|
90.5
|
1.0
|
|
CD2
|
A:HIS198
|
3.3
|
77.2
|
1.0
|
|
CHA
|
A:HEC670
|
3.4
|
0.4
|
1.0
|
|
CHD
|
A:HEC670
|
3.4
|
98.7
|
1.0
|
|
CHB
|
A:HEC670
|
3.4
|
89.2
|
1.0
|
|
CHC
|
A:HEC670
|
3.5
|
75.6
|
1.0
|
|
ND1
|
A:HIS238
|
3.9
|
77.2
|
1.0
|
|
CG
|
A:HIS238
|
4.1
|
81.5
|
1.0
|
|
ND1
|
A:HIS198
|
4.1
|
95.3
|
1.0
|
|
C2A
|
A:HEC670
|
4.2
|
0.7
|
1.0
|
|
C3A
|
A:HEC670
|
4.2
|
0.9
|
1.0
|
|
C3D
|
A:HEC670
|
4.3
|
85.5
|
1.0
|
|
C2D
|
A:HEC670
|
4.3
|
81.3
|
1.0
|
|
CG
|
A:HIS198
|
4.3
|
99.4
|
1.0
|
|
C2B
|
A:HEC670
|
4.3
|
97.0
|
1.0
|
|
C2C
|
A:HEC670
|
4.3
|
78.2
|
1.0
|
|
C3B
|
A:HEC670
|
4.3
|
90.7
|
1.0
|
|
C3C
|
A:HEC670
|
4.3
|
85.9
|
1.0
|
|
Iron binding site 2 out
of 10 in 3pmq
Go back to
Iron Binding Sites List in 3pmq
Iron binding site 2 out
of 10 in the Crystal Structure of the Outer Membrane Decaheme Cytochrome Mtrf
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Crystal Structure of the Outer Membrane Decaheme Cytochrome Mtrf within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe671
b:90.2
occ:1.00
|
FE
|
A:HEC671
|
0.0
|
90.2
|
1.0
|
|
NC
|
A:HEC671
|
2.0
|
83.6
|
1.0
|
|
ND
|
A:HEC671
|
2.1
|
69.8
|
1.0
|
|
NB
|
A:HEC671
|
2.1
|
78.0
|
1.0
|
|
NE2
|
A:HIS204
|
2.1
|
94.7
|
1.0
|
|
NA
|
A:HEC671
|
2.1
|
86.6
|
1.0
|
|
NE2
|
A:HIS218
|
2.1
|
0.7
|
1.0
|
|
CE1
|
A:HIS218
|
2.5
|
94.0
|
1.0
|
|
CE1
|
A:HIS204
|
2.9
|
0.3
|
1.0
|
|
C4C
|
A:HEC671
|
3.0
|
94.9
|
1.0
|
|
C1C
|
A:HEC671
|
3.1
|
88.7
|
1.0
|
|
C1D
|
A:HEC671
|
3.1
|
77.4
|
1.0
|
|
C4D
|
A:HEC671
|
3.1
|
85.6
|
1.0
|
|
C4B
|
A:HEC671
|
3.1
|
76.5
|
1.0
|
|
C1A
|
A:HEC671
|
3.1
|
94.8
|
1.0
|
|
C1B
|
A:HEC671
|
3.1
|
83.7
|
1.0
|
|
C4A
|
A:HEC671
|
3.1
|
84.5
|
1.0
|
|
CD2
|
A:HIS204
|
3.2
|
0.3
|
1.0
|
|
CD2
|
A:HIS218
|
3.4
|
0.0
|
1.0
|
|
CHD
|
A:HEC671
|
3.4
|
72.5
|
1.0
|
|
CHA
|
A:HEC671
|
3.4
|
99.8
|
1.0
|
|
CHC
|
A:HEC671
|
3.4
|
63.4
|
1.0
|
|
CHB
|
A:HEC671
|
3.5
|
86.1
|
1.0
|
|
ND1
|
A:HIS218
|
3.8
|
0.6
|
1.0
|
|
ND1
|
A:HIS204
|
4.1
|
0.7
|
1.0
|
|
CG
|
A:HIS218
|
4.2
|
99.1
|
1.0
|
|
C3C
|
A:HEC671
|
4.3
|
0.1
|
1.0
|
|
C2C
|
A:HEC671
|
4.3
|
0.2
|
1.0
|
|
CG
|
A:HIS204
|
4.3
|
0.7
|
1.0
|
|
C2D
|
A:HEC671
|
4.3
|
84.4
|
1.0
|
|
C3D
|
A:HEC671
|
4.3
|
84.2
|
1.0
|
|
C3B
|
A:HEC671
|
4.3
|
83.9
|
1.0
|
|
C2B
|
A:HEC671
|
4.3
|
79.1
|
1.0
|
|
C3A
|
A:HEC671
|
4.3
|
91.8
|
1.0
|
|
C2A
|
A:HEC671
|
4.3
|
96.0
|
1.0
|
|
CD1
|
A:PHE203
|
4.6
|
0.1
|
1.0
|
|
Iron binding site 3 out
of 10 in 3pmq
Go back to
Iron Binding Sites List in 3pmq
Iron binding site 3 out
of 10 in the Crystal Structure of the Outer Membrane Decaheme Cytochrome Mtrf
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Crystal Structure of the Outer Membrane Decaheme Cytochrome Mtrf within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe672
b:74.8
occ:1.00
|
FE
|
A:HEC672
|
0.0
|
74.8
|
1.0
|
|
NA
|
A:HEC672
|
2.0
|
66.0
|
1.0
|
|
NC
|
A:HEC672
|
2.1
|
70.5
|
1.0
|
|
NB
|
A:HEC672
|
2.1
|
56.5
|
1.0
|
|
ND
|
A:HEC672
|
2.1
|
73.2
|
1.0
|
|
NE2
|
A:HIS253
|
2.1
|
63.2
|
1.0
|
|
NE2
|
A:HIS235
|
2.1
|
67.1
|
1.0
|
|
CE1
|
A:HIS235
|
2.9
|
58.2
|
1.0
|
|
CE1
|
A:HIS253
|
3.0
|
54.1
|
1.0
|
|
CD2
|
A:HIS253
|
3.0
|
73.9
|
1.0
|
|
C4C
|
A:HEC672
|
3.1
|
83.1
|
1.0
|
|
C1A
|
A:HEC672
|
3.1
|
73.0
|
1.0
|
|
C4A
|
A:HEC672
|
3.1
|
58.7
|
1.0
|
|
C1C
|
A:HEC672
|
3.1
|
69.0
|
1.0
|
|
C4B
|
A:HEC672
|
3.1
|
73.7
|
1.0
|
|
C1B
|
A:HEC672
|
3.1
|
52.1
|
1.0
|
|
C1D
|
A:HEC672
|
3.1
|
77.4
|
1.0
|
|
C4D
|
A:HEC672
|
3.1
|
83.8
|
1.0
|
|
CD2
|
A:HIS235
|
3.3
|
87.5
|
1.0
|
|
CHD
|
A:HEC672
|
3.4
|
82.5
|
1.0
|
|
CHA
|
A:HEC672
|
3.4
|
64.1
|
1.0
|
|
CHB
|
A:HEC672
|
3.4
|
53.5
|
1.0
|
|
CHC
|
A:HEC672
|
3.4
|
74.6
|
1.0
|
|
ND1
|
A:HIS235
|
4.1
|
72.2
|
1.0
|
|
ND1
|
A:HIS253
|
4.1
|
80.7
|
1.0
|
|
CG
|
A:HIS253
|
4.1
|
79.2
|
1.0
|
|
C2C
|
A:HEC672
|
4.2
|
68.7
|
1.0
|
|
C3C
|
A:HEC672
|
4.3
|
68.5
|
1.0
|
|
C3A
|
A:HEC672
|
4.3
|
54.4
|
1.0
|
|
C2A
|
A:HEC672
|
4.3
|
69.3
|
1.0
|
|
CG
|
A:HIS235
|
4.3
|
78.0
|
1.0
|
|
C2B
|
A:HEC672
|
4.3
|
63.6
|
1.0
|
|
C3B
|
A:HEC672
|
4.3
|
78.7
|
1.0
|
|
C2D
|
A:HEC672
|
4.3
|
86.7
|
1.0
|
|
C3D
|
A:HEC672
|
4.3
|
89.3
|
1.0
|
|
Iron binding site 4 out
of 10 in 3pmq
Go back to
Iron Binding Sites List in 3pmq
Iron binding site 4 out
of 10 in the Crystal Structure of the Outer Membrane Decaheme Cytochrome Mtrf
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Crystal Structure of the Outer Membrane Decaheme Cytochrome Mtrf within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe673
b:56.3
occ:1.00
|
FE
|
A:HEC673
|
0.0
|
56.3
|
1.0
|
|
NA
|
A:HEC673
|
2.0
|
64.8
|
1.0
|
|
ND
|
A:HEC673
|
2.1
|
49.2
|
1.0
|
|
NC
|
A:HEC673
|
2.1
|
60.2
|
1.0
|
|
NB
|
A:HEC673
|
2.1
|
59.8
|
1.0
|
|
NE2
|
A:HIS278
|
2.1
|
62.2
|
1.0
|
|
NE2
|
A:HIS311
|
2.1
|
64.7
|
1.0
|
|
CE1
|
A:HIS278
|
2.7
|
50.1
|
1.0
|
|
CE1
|
A:HIS311
|
3.0
|
57.0
|
1.0
|
|
C1A
|
A:HEC673
|
3.0
|
61.3
|
1.0
|
|
C1D
|
A:HEC673
|
3.1
|
64.2
|
1.0
|
|
C4A
|
A:HEC673
|
3.1
|
62.7
|
1.0
|
|
C4D
|
A:HEC673
|
3.1
|
57.3
|
1.0
|
|
C4C
|
A:HEC673
|
3.1
|
60.6
|
1.0
|
|
CD2
|
A:HIS311
|
3.1
|
59.9
|
1.0
|
|
C1C
|
A:HEC673
|
3.1
|
60.9
|
1.0
|
|
C1B
|
A:HEC673
|
3.1
|
63.0
|
1.0
|
|
C4B
|
A:HEC673
|
3.1
|
67.3
|
1.0
|
|
CD2
|
A:HIS278
|
3.3
|
52.2
|
1.0
|
|
CHA
|
A:HEC673
|
3.4
|
39.2
|
1.0
|
|
CHD
|
A:HEC673
|
3.4
|
68.2
|
1.0
|
|
CHB
|
A:HEC673
|
3.5
|
59.1
|
1.0
|
|
CHC
|
A:HEC673
|
3.5
|
55.2
|
1.0
|
|
ND1
|
A:HIS278
|
4.0
|
59.1
|
1.0
|
|
ND1
|
A:HIS311
|
4.1
|
63.5
|
1.0
|
|
CG
|
A:HIS311
|
4.2
|
61.6
|
1.0
|
|
C2A
|
A:HEC673
|
4.3
|
70.2
|
1.0
|
|
C3A
|
A:HEC673
|
4.3
|
61.0
|
1.0
|
|
CG
|
A:HIS278
|
4.3
|
51.5
|
1.0
|
|
C2D
|
A:HEC673
|
4.3
|
60.4
|
1.0
|
|
C3D
|
A:HEC673
|
4.3
|
55.7
|
1.0
|
|
C3C
|
A:HEC673
|
4.3
|
64.6
|
1.0
|
|
C2C
|
A:HEC673
|
4.3
|
69.0
|
1.0
|
|
C2B
|
A:HEC673
|
4.3
|
62.7
|
1.0
|
|
C3B
|
A:HEC673
|
4.3
|
69.4
|
1.0
|
|
CBB
|
A:HEC672
|
4.8
|
78.5
|
1.0
|
|
Iron binding site 5 out
of 10 in 3pmq
Go back to
Iron Binding Sites List in 3pmq
Iron binding site 5 out
of 10 in the Crystal Structure of the Outer Membrane Decaheme Cytochrome Mtrf
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Crystal Structure of the Outer Membrane Decaheme Cytochrome Mtrf within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe674
b:45.7
occ:1.00
|
FE
|
A:HEC674
|
0.0
|
45.7
|
1.0
|
|
NA
|
A:HEC674
|
2.0
|
46.9
|
1.0
|
|
NB
|
A:HEC674
|
2.1
|
41.6
|
1.0
|
|
NC
|
A:HEC674
|
2.1
|
59.1
|
1.0
|
|
ND
|
A:HEC674
|
2.1
|
59.5
|
1.0
|
|
NE2
|
A:HIS302
|
2.1
|
46.8
|
1.0
|
|
NE2
|
A:HIS289
|
2.1
|
88.0
|
1.0
|
|
C1A
|
A:HEC674
|
3.0
|
48.7
|
1.0
|
|
C4B
|
A:HEC674
|
3.0
|
59.7
|
1.0
|
|
CD2
|
A:HIS289
|
3.0
|
78.8
|
1.0
|
|
C1B
|
A:HEC674
|
3.0
|
49.2
|
1.0
|
|
C4A
|
A:HEC674
|
3.0
|
56.3
|
1.0
|
|
CE1
|
A:HIS302
|
3.1
|
48.5
|
1.0
|
|
C4D
|
A:HEC674
|
3.1
|
56.4
|
1.0
|
|
C1C
|
A:HEC674
|
3.1
|
49.9
|
1.0
|
|
CD2
|
A:HIS302
|
3.1
|
49.7
|
1.0
|
|
C4C
|
A:HEC674
|
3.1
|
39.8
|
1.0
|
|
C1D
|
A:HEC674
|
3.1
|
62.1
|
1.0
|
|
CE1
|
A:HIS289
|
3.1
|
65.0
|
1.0
|
|
CHA
|
A:HEC674
|
3.4
|
57.5
|
1.0
|
|
CHB
|
A:HEC674
|
3.4
|
55.2
|
1.0
|
|
CHC
|
A:HEC674
|
3.4
|
58.2
|
1.0
|
|
CHD
|
A:HEC674
|
3.5
|
51.6
|
1.0
|
|
ND1
|
A:HIS302
|
4.2
|
72.5
|
1.0
|
|
CG
|
A:HIS289
|
4.2
|
63.4
|
1.0
|
|
ND1
|
A:HIS289
|
4.2
|
53.6
|
1.0
|
|
C2B
|
A:HEC674
|
4.2
|
36.1
|
1.0
|
|
C3B
|
A:HEC674
|
4.2
|
49.7
|
1.0
|
|
CG
|
A:HIS302
|
4.2
|
65.7
|
1.0
|
|
C2A
|
A:HEC674
|
4.3
|
47.4
|
1.0
|
|
C3A
|
A:HEC674
|
4.3
|
51.2
|
1.0
|
|
C2C
|
A:HEC674
|
4.3
|
55.9
|
1.0
|
|
C3C
|
A:HEC674
|
4.3
|
53.6
|
1.0
|
|
C3D
|
A:HEC674
|
4.3
|
52.4
|
1.0
|
|
C2D
|
A:HEC674
|
4.3
|
55.3
|
1.0
|
|
CE1
|
A:PHE283
|
5.0
|
72.6
|
1.0
|
|
Iron binding site 6 out
of 10 in 3pmq
Go back to
Iron Binding Sites List in 3pmq
Iron binding site 6 out
of 10 in the Crystal Structure of the Outer Membrane Decaheme Cytochrome Mtrf
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Crystal Structure of the Outer Membrane Decaheme Cytochrome Mtrf within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe675
b:76.7
occ:1.00
|
FE
|
A:HEC675
|
0.0
|
76.7
|
1.0
|
|
NA
|
A:HEC675
|
2.0
|
72.0
|
1.0
|
|
NC
|
A:HEC675
|
2.0
|
64.1
|
1.0
|
|
NB
|
A:HEC675
|
2.1
|
66.2
|
1.0
|
|
ND
|
A:HEC675
|
2.1
|
78.7
|
1.0
|
|
NE2
|
A:HIS477
|
2.1
|
60.9
|
1.0
|
|
NE2
|
A:HIS527
|
2.1
|
97.0
|
1.0
|
|
CE1
|
A:HIS527
|
2.4
|
89.4
|
1.0
|
|
CE1
|
A:HIS477
|
3.0
|
85.4
|
1.0
|
|
C1A
|
A:HEC675
|
3.1
|
78.3
|
1.0
|
|
C4C
|
A:HEC675
|
3.1
|
83.6
|
1.0
|
|
C1D
|
A:HEC675
|
3.1
|
82.7
|
1.0
|
|
CD2
|
A:HIS477
|
3.1
|
70.1
|
1.0
|
|
C4A
|
A:HEC675
|
3.1
|
75.2
|
1.0
|
|
C1C
|
A:HEC675
|
3.1
|
80.3
|
1.0
|
|
C4D
|
A:HEC675
|
3.1
|
82.4
|
1.0
|
|
C4B
|
A:HEC675
|
3.1
|
74.6
|
1.0
|
|
C1B
|
A:HEC675
|
3.1
|
73.8
|
1.0
|
|
CD2
|
A:HIS527
|
3.3
|
0.7
|
1.0
|
|
CHD
|
A:HEC675
|
3.4
|
86.6
|
1.0
|
|
CHA
|
A:HEC675
|
3.4
|
78.5
|
1.0
|
|
CHC
|
A:HEC675
|
3.5
|
78.2
|
1.0
|
|
CHB
|
A:HEC675
|
3.5
|
60.3
|
1.0
|
|
ND1
|
A:HIS527
|
3.5
|
0.8
|
1.0
|
|
CG
|
A:HIS527
|
4.0
|
1.0
|
1.0
|
|
ND1
|
A:HIS477
|
4.1
|
96.5
|
1.0
|
|
CG
|
A:HIS477
|
4.2
|
76.2
|
1.0
|
|
C2D
|
A:HEC675
|
4.3
|
96.4
|
1.0
|
|
C2A
|
A:HEC675
|
4.3
|
86.3
|
1.0
|
|
C3C
|
A:HEC675
|
4.3
|
97.8
|
1.0
|
|
C3A
|
A:HEC675
|
4.3
|
87.5
|
1.0
|
|
C2C
|
A:HEC675
|
4.3
|
91.2
|
1.0
|
|
C3B
|
A:HEC675
|
4.3
|
84.2
|
1.0
|
|
C3D
|
A:HEC675
|
4.3
|
90.0
|
1.0
|
|
C2B
|
A:HEC675
|
4.3
|
83.6
|
1.0
|
|
CD2
|
A:LEU482
|
5.0
|
62.1
|
1.0
|
|
Iron binding site 7 out
of 10 in 3pmq
Go back to
Iron Binding Sites List in 3pmq
Iron binding site 7 out
of 10 in the Crystal Structure of the Outer Membrane Decaheme Cytochrome Mtrf
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Crystal Structure of the Outer Membrane Decaheme Cytochrome Mtrf within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe676
b:69.9
occ:1.00
|
FE
|
A:HEC676
|
0.0
|
69.9
|
1.0
|
|
NA
|
A:HEC676
|
2.0
|
64.0
|
1.0
|
|
NB
|
A:HEC676
|
2.1
|
55.6
|
1.0
|
|
ND
|
A:HEC676
|
2.1
|
64.2
|
1.0
|
|
NC
|
A:HEC676
|
2.1
|
73.7
|
1.0
|
|
NE2
|
A:HIS499
|
2.1
|
62.7
|
1.0
|
|
NE2
|
A:HIS485
|
2.1
|
61.8
|
1.0
|
|
CE1
|
A:HIS499
|
2.8
|
60.8
|
1.0
|
|
CD2
|
A:HIS485
|
3.0
|
70.5
|
1.0
|
|
C1A
|
A:HEC676
|
3.0
|
85.4
|
1.0
|
|
C4A
|
A:HEC676
|
3.1
|
78.0
|
1.0
|
|
C4D
|
A:HEC676
|
3.1
|
85.0
|
1.0
|
|
C1B
|
A:HEC676
|
3.1
|
62.5
|
1.0
|
|
C4B
|
A:HEC676
|
3.1
|
71.2
|
1.0
|
|
C1D
|
A:HEC676
|
3.1
|
65.3
|
1.0
|
|
C1C
|
A:HEC676
|
3.1
|
84.0
|
1.0
|
|
C4C
|
A:HEC676
|
3.1
|
66.8
|
1.0
|
|
CE1
|
A:HIS485
|
3.2
|
75.8
|
1.0
|
|
CD2
|
A:HIS499
|
3.3
|
62.8
|
1.0
|
|
CHA
|
A:HEC676
|
3.4
|
88.9
|
1.0
|
|
CHB
|
A:HEC676
|
3.4
|
69.0
|
1.0
|
|
CHC
|
A:HEC676
|
3.5
|
76.7
|
1.0
|
|
CHD
|
A:HEC676
|
3.5
|
68.9
|
1.0
|
|
ND1
|
A:HIS499
|
4.0
|
75.7
|
1.0
|
|
CG
|
A:HIS485
|
4.2
|
75.9
|
1.0
|
|
ND1
|
A:HIS485
|
4.2
|
91.7
|
1.0
|
|
C3A
|
A:HEC676
|
4.3
|
85.1
|
1.0
|
|
C2A
|
A:HEC676
|
4.3
|
94.7
|
1.0
|
|
CG
|
A:HIS499
|
4.3
|
68.7
|
1.0
|
|
C2B
|
A:HEC676
|
4.3
|
72.8
|
1.0
|
|
C3B
|
A:HEC676
|
4.3
|
80.5
|
1.0
|
|
C3D
|
A:HEC676
|
4.3
|
91.7
|
1.0
|
|
C2D
|
A:HEC676
|
4.3
|
68.2
|
1.0
|
|
C2C
|
A:HEC676
|
4.3
|
80.2
|
1.0
|
|
C3C
|
A:HEC676
|
4.3
|
78.6
|
1.0
|
|
CG2
|
A:ILE484
|
5.0
|
60.5
|
1.0
|
|
Iron binding site 8 out
of 10 in 3pmq
Go back to
Iron Binding Sites List in 3pmq
Iron binding site 8 out
of 10 in the Crystal Structure of the Outer Membrane Decaheme Cytochrome Mtrf
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Crystal Structure of the Outer Membrane Decaheme Cytochrome Mtrf within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe677
b:97.0
occ:1.00
|
FE
|
A:HEC677
|
0.0
|
97.0
|
1.0
|
|
NA
|
A:HEC677
|
2.0
|
0.1
|
1.0
|
|
NB
|
A:HEC677
|
2.1
|
0.0
|
1.0
|
|
NC
|
A:HEC677
|
2.1
|
0.4
|
1.0
|
|
ND
|
A:HEC677
|
2.1
|
0.3
|
1.0
|
|
NE2
|
A:HIS550
|
2.1
|
91.6
|
1.0
|
|
NE2
|
A:HIS524
|
2.1
|
0.5
|
1.0
|
|
CE1
|
A:HIS550
|
2.7
|
76.0
|
1.0
|
|
CE1
|
A:HIS524
|
2.8
|
71.8
|
1.0
|
|
C4A
|
A:HEC677
|
3.0
|
0.9
|
1.0
|
|
C1A
|
A:HEC677
|
3.0
|
99.9
|
1.0
|
|
C1B
|
A:HEC677
|
3.1
|
0.2
|
1.0
|
|
C4C
|
A:HEC677
|
3.1
|
0.5
|
1.0
|
|
C4B
|
A:HEC677
|
3.1
|
0.7
|
1.0
|
|
C1D
|
A:HEC677
|
3.1
|
0.3
|
1.0
|
|
C1C
|
A:HEC677
|
3.1
|
0.1
|
1.0
|
|
C4D
|
A:HEC677
|
3.1
|
96.3
|
1.0
|
|
CD2
|
A:HIS524
|
3.3
|
0.6
|
1.0
|
|
CD2
|
A:HIS550
|
3.3
|
0.5
|
1.0
|
|
CHB
|
A:HEC677
|
3.4
|
0.3
|
1.0
|
|
CHA
|
A:HEC677
|
3.4
|
95.4
|
1.0
|
|
CHD
|
A:HEC677
|
3.4
|
0.9
|
1.0
|
|
CHC
|
A:HEC677
|
3.5
|
0.6
|
1.0
|
|
ND1
|
A:HIS550
|
3.9
|
89.8
|
1.0
|
|
ND1
|
A:HIS524
|
4.0
|
94.1
|
1.0
|
|
C2A
|
A:HEC677
|
4.2
|
97.9
|
1.0
|
|
C3A
|
A:HEC677
|
4.2
|
0.7
|
1.0
|
|
CG
|
A:HIS550
|
4.2
|
0.3
|
1.0
|
|
CG
|
A:HIS524
|
4.3
|
96.7
|
1.0
|
|
C2C
|
A:HEC677
|
4.3
|
0.5
|
1.0
|
|
C3C
|
A:HEC677
|
4.3
|
0.8
|
1.0
|
|
C2B
|
A:HEC677
|
4.3
|
0.1
|
1.0
|
|
C3B
|
A:HEC677
|
4.3
|
0.2
|
1.0
|
|
C2D
|
A:HEC677
|
4.3
|
0.1
|
1.0
|
|
C3D
|
A:HEC677
|
4.3
|
91.9
|
1.0
|
|
Iron binding site 9 out
of 10 in 3pmq
Go back to
Iron Binding Sites List in 3pmq
Iron binding site 9 out
of 10 in the Crystal Structure of the Outer Membrane Decaheme Cytochrome Mtrf
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Crystal Structure of the Outer Membrane Decaheme Cytochrome Mtrf within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe678
b:0.5
occ:1.00
|
FE
|
A:HEC678
|
0.0
|
0.5
|
1.0
|
|
NA
|
A:HEC678
|
2.1
|
0.3
|
1.0
|
|
NC
|
A:HEC678
|
2.1
|
0.5
|
1.0
|
|
NB
|
A:HEC678
|
2.1
|
0.8
|
1.0
|
|
NE2
|
A:HIS636
|
2.1
|
0.7
|
1.0
|
|
NE2
|
A:HIS590
|
2.1
|
0.1
|
1.0
|
|
ND
|
A:HEC678
|
2.1
|
0.8
|
1.0
|
|
CE1
|
A:HIS590
|
2.6
|
0.9
|
1.0
|
|
C1A
|
A:HEC678
|
3.0
|
0.5
|
1.0
|
|
C4A
|
A:HEC678
|
3.0
|
0.0
|
1.0
|
|
CE1
|
A:HIS636
|
3.0
|
0.1
|
1.0
|
|
C1B
|
A:HEC678
|
3.1
|
0.9
|
1.0
|
|
C4C
|
A:HEC678
|
3.1
|
0.3
|
1.0
|
|
C1D
|
A:HEC678
|
3.1
|
0.3
|
1.0
|
|
C4D
|
A:HEC678
|
3.1
|
0.6
|
1.0
|
|
C4B
|
A:HEC678
|
3.1
|
0.2
|
1.0
|
|
CD2
|
A:HIS636
|
3.1
|
0.9
|
1.0
|
|
C1C
|
A:HEC678
|
3.1
|
0.5
|
1.0
|
|
CHB
|
A:HEC678
|
3.4
|
0.0
|
1.0
|
|
CD2
|
A:HIS590
|
3.4
|
0.7
|
1.0
|
|
CHA
|
A:HEC678
|
3.4
|
0.8
|
1.0
|
|
CHD
|
A:HEC678
|
3.4
|
0.1
|
1.0
|
|
CHC
|
A:HEC678
|
3.5
|
0.7
|
1.0
|
|
ND1
|
A:HIS590
|
3.9
|
0.9
|
1.0
|
|
C2A
|
A:HEC678
|
4.1
|
0.3
|
1.0
|
|
C3A
|
A:HEC678
|
4.1
|
0.9
|
1.0
|
|
ND1
|
A:HIS636
|
4.2
|
0.6
|
1.0
|
|
CG
|
A:HIS636
|
4.2
|
0.7
|
1.0
|
|
C2D
|
A:HEC678
|
4.3
|
0.7
|
1.0
|
|
CG
|
A:HIS590
|
4.3
|
0.6
|
1.0
|
|
C3D
|
A:HEC678
|
4.3
|
0.8
|
1.0
|
|
C2B
|
A:HEC678
|
4.3
|
0.1
|
1.0
|
|
C3C
|
A:HEC678
|
4.3
|
0.1
|
1.0
|
|
C3B
|
A:HEC678
|
4.3
|
0.5
|
1.0
|
|
C2C
|
A:HEC678
|
4.3
|
0.9
|
1.0
|
|
CBB
|
A:HEC677
|
4.8
|
90.7
|
1.0
|
|
O
|
A:CYS589
|
4.9
|
0.3
|
1.0
|
|
Iron binding site 10 out
of 10 in 3pmq
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Iron Binding Sites List in 3pmq
Iron binding site 10 out
of 10 in the Crystal Structure of the Outer Membrane Decaheme Cytochrome Mtrf
 Mono view
 Stereo pair view
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A full contact list of Iron with other atoms in the Fe binding
site number 10 of Crystal Structure of the Outer Membrane Decaheme Cytochrome Mtrf within 5.0Å range:
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probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
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A:Fe679
b:0.1
occ:1.00
|
FE
|
A:HEC679
|
0.0
|
0.1
|
1.0
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NC
|
A:HEC679
|
2.0
|
0.8
|
1.0
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NB
|
A:HEC679
|
2.1
|
0.2
|
1.0
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NA
|
A:HEC679
|
2.1
|
0.0
|
1.0
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ND
|
A:HEC679
|
2.1
|
0.9
|
1.0
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NE2
|
A:HIS624
|
2.1
|
0.8
|
1.0
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NE2
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A:HIS598
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2.1
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0.7
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1.0
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CE1
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A:HIS624
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2.7
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0.8
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1.0
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C4C
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A:HEC679
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3.0
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0.7
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1.0
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C1C
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A:HEC679
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3.0
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0.3
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1.0
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C1D
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A:HEC679
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3.1
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0.5
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1.0
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C4B
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A:HEC679
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3.1
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0.2
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1.0
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CD2
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A:HIS598
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3.1
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0.6
|
1.0
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C1B
|
A:HEC679
|
3.1
|
0.4
|
1.0
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C1A
|
A:HEC679
|
3.1
|
0.4
|
1.0
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C4A
|
A:HEC679
|
3.1
|
0.5
|
1.0
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C4D
|
A:HEC679
|
3.1
|
0.9
|
1.0
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CE1
|
A:HIS598
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3.1
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1.0
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1.0
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CD2
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A:HIS624
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3.3
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0.2
|
1.0
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CHD
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A:HEC679
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3.4
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0.6
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1.0
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CHC
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A:HEC679
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3.4
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0.3
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1.0
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CHA
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A:HEC679
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3.4
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1.0
|
1.0
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CHB
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A:HEC679
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3.5
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0.0
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1.0
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ND1
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A:HIS624
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4.0
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0.2
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1.0
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C2C
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A:HEC679
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4.2
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0.5
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1.0
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C3C
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A:HEC679
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4.2
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0.1
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1.0
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ND1
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A:HIS598
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4.2
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0.9
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1.0
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CG
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A:HIS598
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4.2
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0.8
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1.0
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CG
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A:HIS624
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4.3
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0.9
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1.0
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C3B
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A:HEC679
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4.3
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1.0
|
1.0
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C2D
|
A:HEC679
|
4.3
|
0.5
|
1.0
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C2B
|
A:HEC679
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4.3
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0.2
|
1.0
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C3A
|
A:HEC679
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4.3
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0.4
|
1.0
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C2A
|
A:HEC679
|
4.3
|
0.7
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1.0
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C3D
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A:HEC679
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4.3
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0.9
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1.0
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Reference:
T.A.Clarke,
M.J.Edwards,
A.J.Gates,
A.Hall,
G.F.White,
J.Bradley,
C.L.Reardon,
L.Shi,
A.S.Beliaev,
M.J.Marshall,
Z.Wang,
N.J.Watmough,
J.K.Fredrickson,
J.M.Zachara,
J.N.Butt,
D.J.Richardson.
Structure of A Bacterial Cell Surface Decaheme Electron Conduit. Proc.Natl.Acad.Sci.Usa V. 108 9384 2011.
ISSN: ISSN 0027-8424
PubMed: 21606337
DOI: 10.1073/PNAS.1017200108
Page generated: Sun Aug 4 18:04:39 2024
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