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Iron in PDB 3pzw: Soybean Lipoxygenase-1 - Re-Refinement

Enzymatic activity of Soybean Lipoxygenase-1 - Re-Refinement

All present enzymatic activity of Soybean Lipoxygenase-1 - Re-Refinement:
1.13.11.12;

Protein crystallography data

The structure of Soybean Lipoxygenase-1 - Re-Refinement, PDB code: 3pzw was solved by M.Chruszcz, W.Minor, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.00 / 1.40
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 94.900, 94.000, 49.900, 90.00, 90.10, 90.00
R / Rfree (%) 14.9 / 16.9

Iron Binding Sites:

The binding sites of Iron atom in the Soybean Lipoxygenase-1 - Re-Refinement (pdb code 3pzw). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Soybean Lipoxygenase-1 - Re-Refinement, PDB code: 3pzw:

Iron binding site 1 out of 1 in 3pzw

Go back to Iron Binding Sites List in 3pzw
Iron binding site 1 out of 1 in the Soybean Lipoxygenase-1 - Re-Refinement


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Soybean Lipoxygenase-1 - Re-Refinement within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe840

b:17.0
occ:0.70
O A:HOH870 2.1 22.1 0.9
NE2 A:HIS499 2.2 22.3 0.4
NE2 A:HIS499 2.2 17.1 0.6
OXT A:ILE839 2.2 20.7 1.0
NE2 A:HIS690 2.3 13.6 1.0
NE2 A:HIS504 2.3 18.9 1.0
OD1 A:ASN694 2.8 21.0 1.0
CE1 A:HIS499 3.1 19.7 0.4
CE1 A:HIS499 3.1 15.9 0.6
CE1 A:HIS504 3.2 20.7 1.0
C A:ILE839 3.2 21.4 1.0
CD2 A:HIS690 3.3 13.0 1.0
CD2 A:HIS499 3.3 21.9 0.4
CE1 A:HIS690 3.3 14.0 1.0
CD2 A:HIS499 3.3 18.4 0.6
CD2 A:HIS504 3.4 16.7 1.0
O A:ILE839 3.5 21.0 1.0
CG A:ASN694 3.6 14.6 1.0
CB A:ASN694 4.1 13.2 1.0
ND1 A:HIS499 4.2 22.3 0.4
ND1 A:HIS499 4.3 18.9 0.6
CG A:HIS499 4.4 17.8 0.4
ND1 A:HIS504 4.4 18.8 1.0
O A:HOH1626 4.4 44.8 1.0
CG A:HIS499 4.4 14.2 0.6
ND1 A:HIS690 4.4 14.5 1.0
CG A:HIS690 4.4 14.4 1.0
ND2 A:ASN694 4.4 13.3 1.0
CG A:HIS504 4.5 16.0 1.0
CG2 A:ILE837 4.5 15.8 1.0
CA A:ILE839 4.7 18.9 1.0
N A:ILE839 4.9 18.5 1.0
CG2 A:ILE839 5.0 18.9 1.0

Reference:

M.Chruszcz, A.Wlodawer, W.Minor. Determination of Protein Structures - A Series of Fortunate Events. Biophys.J. V. 95 1 2008.
ISSN: ISSN 0006-3495
PubMed: 18441029
DOI: 10.1529/BIOPHYSJ.108.131789
Page generated: Sun Dec 13 15:18:27 2020

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