Iron in PDB 3q08: Crystal Structure of Chlorite Dismutase From D. Aromatica at pH 6.5
Enzymatic activity of Crystal Structure of Chlorite Dismutase From D. Aromatica at pH 6.5
All present enzymatic activity of Crystal Structure of Chlorite Dismutase From D. Aromatica at pH 6.5:
1.13.11.49;
Protein crystallography data
The structure of Crystal Structure of Chlorite Dismutase From D. Aromatica at pH 6.5, PDB code: 3q08
was solved by
B.R.Goblirsch,
C.M.Wilmot,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
46.91 /
3.05
|
|
Space group
|
P 21 21 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
122.704,
202.850,
247.103,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
17.8 /
22.1
|
Other elements in 3q08:
The structure of Crystal Structure of Chlorite Dismutase From D. Aromatica at pH 6.5 also contains other interesting chemical elements:
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Binding sites:
The binding sites of Iron atom in the Crystal Structure of Chlorite Dismutase From D. Aromatica at pH 6.5
(pdb code 3q08). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 20 binding sites of Iron where determined in the
Crystal Structure of Chlorite Dismutase From D. Aromatica at pH 6.5, PDB code: 3q08:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 20 in 3q08
Go back to
Iron Binding Sites List in 3q08
Iron binding site 1 out
of 20 in the Crystal Structure of Chlorite Dismutase From D. Aromatica at pH 6.5
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Crystal Structure of Chlorite Dismutase From D. Aromatica at pH 6.5 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1000
b:13.4
occ:1.00
|
FE
|
A:HEM1000
|
0.0
|
13.4
|
1.0
|
|
O2
|
A:NO22000
|
1.8
|
22.8
|
1.0
|
|
NC
|
A:HEM1000
|
1.9
|
11.5
|
1.0
|
|
NB
|
A:HEM1000
|
2.0
|
13.6
|
1.0
|
|
NA
|
A:HEM1000
|
2.1
|
12.8
|
1.0
|
|
ND
|
A:HEM1000
|
2.1
|
11.4
|
1.0
|
|
NE2
|
A:HIS170
|
2.3
|
15.9
|
1.0
|
|
N
|
A:NO22000
|
2.7
|
21.7
|
1.0
|
|
C4C
|
A:HEM1000
|
2.9
|
10.8
|
1.0
|
|
C1C
|
A:HEM1000
|
3.0
|
13.0
|
1.0
|
|
C1B
|
A:HEM1000
|
3.0
|
16.2
|
1.0
|
|
CE1
|
A:HIS170
|
3.0
|
16.2
|
1.0
|
|
C4B
|
A:HEM1000
|
3.0
|
15.1
|
1.0
|
|
C1D
|
A:HEM1000
|
3.1
|
10.1
|
1.0
|
|
C4A
|
A:HEM1000
|
3.1
|
13.7
|
1.0
|
|
C4D
|
A:HEM1000
|
3.2
|
11.0
|
1.0
|
|
C1A
|
A:HEM1000
|
3.2
|
13.5
|
1.0
|
|
CHD
|
A:HEM1000
|
3.3
|
9.6
|
1.0
|
|
CHB
|
A:HEM1000
|
3.4
|
16.0
|
1.0
|
|
CHC
|
A:HEM1000
|
3.4
|
13.8
|
1.0
|
|
CHA
|
A:HEM1000
|
3.5
|
12.5
|
1.0
|
|
CD2
|
A:HIS170
|
3.6
|
17.6
|
1.0
|
|
O1
|
A:NO22000
|
3.8
|
20.4
|
1.0
|
|
C3C
|
A:HEM1000
|
4.1
|
12.2
|
1.0
|
|
NE
|
A:ARG183
|
4.1
|
18.9
|
1.0
|
|
C2C
|
A:HEM1000
|
4.2
|
12.6
|
1.0
|
|
C3B
|
A:HEM1000
|
4.2
|
18.3
|
1.0
|
|
NH2
|
A:ARG183
|
4.2
|
21.8
|
1.0
|
|
ND1
|
A:HIS170
|
4.2
|
16.0
|
1.0
|
|
C2B
|
A:HEM1000
|
4.2
|
17.9
|
1.0
|
|
C2D
|
A:HEM1000
|
4.3
|
9.4
|
1.0
|
|
C3A
|
A:HEM1000
|
4.3
|
14.6
|
1.0
|
|
C2A
|
A:HEM1000
|
4.4
|
14.8
|
1.0
|
|
C3D
|
A:HEM1000
|
4.4
|
9.8
|
1.0
|
|
CG
|
A:HIS170
|
4.5
|
15.7
|
1.0
|
|
CZ
|
A:ARG183
|
4.5
|
21.9
|
1.0
|
|
Iron binding site 2 out
of 20 in 3q08
Go back to
Iron Binding Sites List in 3q08
Iron binding site 2 out
of 20 in the Crystal Structure of Chlorite Dismutase From D. Aromatica at pH 6.5
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Crystal Structure of Chlorite Dismutase From D. Aromatica at pH 6.5 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe1000
b:15.9
occ:1.00
|
FE
|
B:HEM1000
|
0.0
|
15.9
|
1.0
|
|
O2
|
B:NO22000
|
1.7
|
30.8
|
1.0
|
|
NC
|
B:HEM1000
|
1.9
|
10.8
|
1.0
|
|
NB
|
B:HEM1000
|
2.0
|
12.0
|
1.0
|
|
ND
|
B:HEM1000
|
2.1
|
11.8
|
1.0
|
|
NA
|
B:HEM1000
|
2.1
|
13.7
|
1.0
|
|
NE2
|
B:HIS170
|
2.6
|
12.8
|
1.0
|
|
N
|
B:NO22000
|
2.8
|
28.4
|
1.0
|
|
C4C
|
B:HEM1000
|
2.9
|
11.3
|
1.0
|
|
C1B
|
B:HEM1000
|
3.0
|
15.4
|
1.0
|
|
C4B
|
B:HEM1000
|
3.0
|
13.3
|
1.0
|
|
C1C
|
B:HEM1000
|
3.0
|
12.0
|
1.0
|
|
C1D
|
B:HEM1000
|
3.0
|
11.3
|
1.0
|
|
C4A
|
B:HEM1000
|
3.1
|
14.5
|
1.0
|
|
C4D
|
B:HEM1000
|
3.2
|
11.3
|
1.0
|
|
C1A
|
B:HEM1000
|
3.2
|
12.9
|
1.0
|
|
CHD
|
B:HEM1000
|
3.3
|
10.8
|
1.0
|
|
CE1
|
B:HIS170
|
3.3
|
14.2
|
1.0
|
|
CHB
|
B:HEM1000
|
3.3
|
15.6
|
1.0
|
|
CHC
|
B:HEM1000
|
3.4
|
12.8
|
1.0
|
|
CHA
|
B:HEM1000
|
3.6
|
12.1
|
1.0
|
|
CD2
|
B:HIS170
|
3.7
|
14.3
|
1.0
|
|
O1
|
B:NO22000
|
3.9
|
26.8
|
1.0
|
|
C3C
|
B:HEM1000
|
4.1
|
12.1
|
1.0
|
|
C3B
|
B:HEM1000
|
4.2
|
16.4
|
1.0
|
|
C2B
|
B:HEM1000
|
4.2
|
16.6
|
1.0
|
|
C2C
|
B:HEM1000
|
4.2
|
11.4
|
1.0
|
|
NE
|
B:ARG183
|
4.3
|
23.3
|
1.0
|
|
NH2
|
B:ARG183
|
4.3
|
22.8
|
1.0
|
|
C2D
|
B:HEM1000
|
4.3
|
10.8
|
1.0
|
|
C3A
|
B:HEM1000
|
4.3
|
14.8
|
1.0
|
|
C3D
|
B:HEM1000
|
4.4
|
10.7
|
1.0
|
|
C2A
|
B:HEM1000
|
4.4
|
14.1
|
1.0
|
|
ND1
|
B:HIS170
|
4.6
|
11.6
|
1.0
|
|
CZ
|
B:ARG183
|
4.6
|
25.6
|
1.0
|
|
CG
|
B:HIS170
|
4.8
|
13.1
|
1.0
|
|
Iron binding site 3 out
of 20 in 3q08
Go back to
Iron Binding Sites List in 3q08
Iron binding site 3 out
of 20 in the Crystal Structure of Chlorite Dismutase From D. Aromatica at pH 6.5
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Crystal Structure of Chlorite Dismutase From D. Aromatica at pH 6.5 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe1000
b:11.0
occ:1.00
|
FE
|
C:HEM1000
|
0.0
|
11.0
|
1.0
|
|
O2
|
C:NO22000
|
1.8
|
22.5
|
1.0
|
|
NC
|
C:HEM1000
|
2.0
|
9.9
|
1.0
|
|
NB
|
C:HEM1000
|
2.0
|
11.3
|
1.0
|
|
NA
|
C:HEM1000
|
2.0
|
11.8
|
1.0
|
|
ND
|
C:HEM1000
|
2.0
|
9.7
|
1.0
|
|
NE2
|
C:HIS170
|
2.2
|
13.4
|
1.0
|
|
N
|
C:NO22000
|
2.7
|
22.0
|
1.0
|
|
C4C
|
C:HEM1000
|
2.9
|
10.1
|
1.0
|
|
CE1
|
C:HIS170
|
3.0
|
14.5
|
1.0
|
|
C1D
|
C:HEM1000
|
3.0
|
9.6
|
1.0
|
|
C1B
|
C:HEM1000
|
3.0
|
14.8
|
1.0
|
|
C4A
|
C:HEM1000
|
3.0
|
13.4
|
1.0
|
|
C1C
|
C:HEM1000
|
3.1
|
10.6
|
1.0
|
|
C4B
|
C:HEM1000
|
3.1
|
12.2
|
1.0
|
|
C4D
|
C:HEM1000
|
3.1
|
10.2
|
1.0
|
|
C1A
|
C:HEM1000
|
3.1
|
12.2
|
1.0
|
|
CHD
|
C:HEM1000
|
3.3
|
9.9
|
1.0
|
|
CD2
|
C:HIS170
|
3.3
|
14.7
|
1.0
|
|
CHB
|
C:HEM1000
|
3.3
|
15.4
|
1.0
|
|
CHC
|
C:HEM1000
|
3.5
|
11.4
|
1.0
|
|
CHA
|
C:HEM1000
|
3.5
|
11.0
|
1.0
|
|
O1
|
C:NO22000
|
3.6
|
21.7
|
1.0
|
|
NE
|
C:ARG183
|
4.1
|
18.4
|
1.0
|
|
C3C
|
C:HEM1000
|
4.1
|
10.4
|
1.0
|
|
ND1
|
C:HIS170
|
4.2
|
12.7
|
1.0
|
|
C2C
|
C:HEM1000
|
4.2
|
9.9
|
1.0
|
|
C3B
|
C:HEM1000
|
4.3
|
15.4
|
1.0
|
|
NH2
|
C:ARG183
|
4.3
|
20.4
|
1.0
|
|
C2B
|
C:HEM1000
|
4.3
|
15.5
|
1.0
|
|
C2D
|
C:HEM1000
|
4.3
|
9.6
|
1.0
|
|
C3A
|
C:HEM1000
|
4.3
|
14.4
|
1.0
|
|
C3D
|
C:HEM1000
|
4.3
|
9.6
|
1.0
|
|
C2A
|
C:HEM1000
|
4.3
|
13.9
|
1.0
|
|
CG
|
C:HIS170
|
4.4
|
14.0
|
1.0
|
|
CZ
|
C:ARG183
|
4.6
|
20.4
|
1.0
|
|
Iron binding site 4 out
of 20 in 3q08
Go back to
Iron Binding Sites List in 3q08
Iron binding site 4 out
of 20 in the Crystal Structure of Chlorite Dismutase From D. Aromatica at pH 6.5
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Crystal Structure of Chlorite Dismutase From D. Aromatica at pH 6.5 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe1000
b:15.3
occ:1.00
|
FE
|
D:HEM1000
|
0.0
|
15.3
|
1.0
|
|
O2
|
D:NO22000
|
1.8
|
25.1
|
1.0
|
|
NC
|
D:HEM1000
|
1.9
|
13.8
|
1.0
|
|
NB
|
D:HEM1000
|
2.0
|
16.2
|
1.0
|
|
ND
|
D:HEM1000
|
2.1
|
14.1
|
1.0
|
|
NA
|
D:HEM1000
|
2.1
|
16.4
|
1.0
|
|
NE2
|
D:HIS170
|
2.3
|
18.1
|
1.0
|
|
N
|
D:NO22000
|
2.7
|
24.9
|
1.0
|
|
C4C
|
D:HEM1000
|
2.9
|
13.9
|
1.0
|
|
C1C
|
D:HEM1000
|
3.0
|
14.4
|
1.0
|
|
C4B
|
D:HEM1000
|
3.0
|
16.6
|
1.0
|
|
C1B
|
D:HEM1000
|
3.0
|
19.5
|
1.0
|
|
C1D
|
D:HEM1000
|
3.0
|
12.8
|
1.0
|
|
C4D
|
D:HEM1000
|
3.1
|
14.6
|
1.0
|
|
C4A
|
D:HEM1000
|
3.1
|
18.0
|
1.0
|
|
C1A
|
D:HEM1000
|
3.1
|
16.6
|
1.0
|
|
CE1
|
D:HIS170
|
3.2
|
17.2
|
1.0
|
|
CHD
|
D:HEM1000
|
3.3
|
12.9
|
1.0
|
|
CD2
|
D:HIS170
|
3.4
|
18.8
|
1.0
|
|
CHC
|
D:HEM1000
|
3.4
|
15.1
|
1.0
|
|
CHB
|
D:HEM1000
|
3.4
|
19.8
|
1.0
|
|
CHA
|
D:HEM1000
|
3.5
|
15.6
|
1.0
|
|
O1
|
D:NO22000
|
3.7
|
24.2
|
1.0
|
|
NE
|
D:ARG183
|
4.1
|
22.2
|
1.0
|
|
C3C
|
D:HEM1000
|
4.1
|
13.9
|
1.0
|
|
C2C
|
D:HEM1000
|
4.2
|
14.0
|
1.0
|
|
C3B
|
D:HEM1000
|
4.2
|
19.9
|
1.0
|
|
C2B
|
D:HEM1000
|
4.3
|
20.3
|
1.0
|
|
NH2
|
D:ARG183
|
4.3
|
22.7
|
1.0
|
|
C2D
|
D:HEM1000
|
4.3
|
12.5
|
1.0
|
|
C3D
|
D:HEM1000
|
4.3
|
13.3
|
1.0
|
|
ND1
|
D:HIS170
|
4.4
|
17.6
|
1.0
|
|
C2A
|
D:HEM1000
|
4.4
|
18.3
|
1.0
|
|
C3A
|
D:HEM1000
|
4.4
|
18.8
|
1.0
|
|
CG
|
D:HIS170
|
4.5
|
18.3
|
1.0
|
|
CZ
|
D:ARG183
|
4.7
|
23.4
|
1.0
|
|
Iron binding site 5 out
of 20 in 3q08
Go back to
Iron Binding Sites List in 3q08
Iron binding site 5 out
of 20 in the Crystal Structure of Chlorite Dismutase From D. Aromatica at pH 6.5
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Crystal Structure of Chlorite Dismutase From D. Aromatica at pH 6.5 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe1000
b:9.6
occ:1.00
|
FE
|
E:HEM1000
|
0.0
|
9.6
|
1.0
|
|
O2
|
E:NO22000
|
1.8
|
16.3
|
1.0
|
|
NC
|
E:HEM1000
|
1.9
|
8.0
|
1.0
|
|
NB
|
E:HEM1000
|
2.0
|
10.2
|
1.0
|
|
ND
|
E:HEM1000
|
2.0
|
7.9
|
1.0
|
|
NA
|
E:HEM1000
|
2.1
|
10.3
|
1.0
|
|
NE2
|
E:HIS170
|
2.2
|
11.2
|
1.0
|
|
N
|
E:NO22000
|
2.6
|
15.9
|
1.0
|
|
C4C
|
E:HEM1000
|
2.9
|
7.7
|
1.0
|
|
CE1
|
E:HIS170
|
3.0
|
11.8
|
1.0
|
|
C1D
|
E:HEM1000
|
3.0
|
7.4
|
1.0
|
|
C1C
|
E:HEM1000
|
3.0
|
9.0
|
1.0
|
|
C1B
|
E:HEM1000
|
3.0
|
12.2
|
1.0
|
|
C4A
|
E:HEM1000
|
3.1
|
10.3
|
1.0
|
|
C4B
|
E:HEM1000
|
3.1
|
10.8
|
1.0
|
|
C4D
|
E:HEM1000
|
3.1
|
8.3
|
1.0
|
|
C1A
|
E:HEM1000
|
3.2
|
10.0
|
1.0
|
|
CD2
|
E:HIS170
|
3.3
|
12.3
|
1.0
|
|
CHD
|
E:HEM1000
|
3.3
|
6.9
|
1.0
|
|
CHB
|
E:HEM1000
|
3.4
|
11.9
|
1.0
|
|
CHC
|
E:HEM1000
|
3.4
|
9.5
|
1.0
|
|
CHA
|
E:HEM1000
|
3.5
|
8.8
|
1.0
|
|
O1
|
E:NO22000
|
3.8
|
15.6
|
1.0
|
|
NE
|
E:ARG183
|
4.1
|
15.5
|
1.0
|
|
C3C
|
E:HEM1000
|
4.1
|
8.2
|
1.0
|
|
ND1
|
E:HIS170
|
4.1
|
10.2
|
1.0
|
|
C2C
|
E:HEM1000
|
4.2
|
7.9
|
1.0
|
|
C2D
|
E:HEM1000
|
4.3
|
6.9
|
1.0
|
|
C3B
|
E:HEM1000
|
4.3
|
13.5
|
1.0
|
|
C2B
|
E:HEM1000
|
4.3
|
12.8
|
1.0
|
|
C3A
|
E:HEM1000
|
4.3
|
10.7
|
1.0
|
|
CG
|
E:HIS170
|
4.3
|
12.2
|
1.0
|
|
C3D
|
E:HEM1000
|
4.3
|
7.7
|
1.0
|
|
C2A
|
E:HEM1000
|
4.4
|
11.1
|
1.0
|
|
NH2
|
E:ARG183
|
4.5
|
17.4
|
1.0
|
|
CZ
|
E:ARG183
|
4.7
|
18.2
|
1.0
|
|
CD
|
E:ARG183
|
4.9
|
14.0
|
1.0
|
|
Iron binding site 6 out
of 20 in 3q08
Go back to
Iron Binding Sites List in 3q08
Iron binding site 6 out
of 20 in the Crystal Structure of Chlorite Dismutase From D. Aromatica at pH 6.5
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Crystal Structure of Chlorite Dismutase From D. Aromatica at pH 6.5 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Fe1000
b:29.5
occ:1.00
|
FE
|
F:HEM1000
|
0.0
|
29.5
|
1.0
|
|
O2
|
F:NO22000
|
1.7
|
36.7
|
1.0
|
|
NC
|
F:HEM1000
|
1.9
|
25.9
|
1.0
|
|
NB
|
F:HEM1000
|
2.0
|
30.4
|
1.0
|
|
ND
|
F:HEM1000
|
2.1
|
24.7
|
1.0
|
|
NA
|
F:HEM1000
|
2.1
|
29.3
|
1.0
|
|
NE2
|
F:HIS170
|
2.4
|
29.2
|
1.0
|
|
N
|
F:NO22000
|
2.7
|
36.3
|
1.0
|
|
C4C
|
F:HEM1000
|
2.9
|
24.7
|
1.0
|
|
C1B
|
F:HEM1000
|
3.0
|
33.3
|
1.0
|
|
C1D
|
F:HEM1000
|
3.0
|
22.9
|
1.0
|
|
C1C
|
F:HEM1000
|
3.0
|
27.0
|
1.0
|
|
C4B
|
F:HEM1000
|
3.0
|
31.1
|
1.0
|
|
C4A
|
F:HEM1000
|
3.1
|
31.2
|
1.0
|
|
C4D
|
F:HEM1000
|
3.2
|
25.1
|
1.0
|
|
C1A
|
F:HEM1000
|
3.2
|
29.0
|
1.0
|
|
CE1
|
F:HIS170
|
3.2
|
28.3
|
1.0
|
|
CHD
|
F:HEM1000
|
3.3
|
22.8
|
1.0
|
|
CHB
|
F:HEM1000
|
3.4
|
33.2
|
1.0
|
|
CD2
|
F:HIS170
|
3.4
|
31.3
|
1.0
|
|
CHC
|
F:HEM1000
|
3.4
|
28.3
|
1.0
|
|
CHA
|
F:HEM1000
|
3.6
|
27.2
|
1.0
|
|
O1
|
F:NO22000
|
3.7
|
35.1
|
1.0
|
|
C3C
|
F:HEM1000
|
4.1
|
24.8
|
1.0
|
|
NE
|
F:ARG183
|
4.2
|
38.5
|
1.0
|
|
C2C
|
F:HEM1000
|
4.2
|
25.4
|
1.0
|
|
C3B
|
F:HEM1000
|
4.2
|
34.7
|
1.0
|
|
C2B
|
F:HEM1000
|
4.3
|
35.1
|
1.0
|
|
C2D
|
F:HEM1000
|
4.3
|
21.9
|
1.0
|
|
NH2
|
F:ARG183
|
4.3
|
39.5
|
1.0
|
|
C3A
|
F:HEM1000
|
4.4
|
32.7
|
1.0
|
|
ND1
|
F:HIS170
|
4.4
|
28.1
|
1.0
|
|
C3D
|
F:HEM1000
|
4.4
|
22.8
|
1.0
|
|
C2A
|
F:HEM1000
|
4.4
|
30.9
|
1.0
|
|
CG
|
F:HIS170
|
4.5
|
30.1
|
1.0
|
|
CZ
|
F:ARG183
|
4.7
|
41.1
|
1.0
|
|
Iron binding site 7 out
of 20 in 3q08
Go back to
Iron Binding Sites List in 3q08
Iron binding site 7 out
of 20 in the Crystal Structure of Chlorite Dismutase From D. Aromatica at pH 6.5
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Crystal Structure of Chlorite Dismutase From D. Aromatica at pH 6.5 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Fe1000
b:17.7
occ:1.00
|
FE
|
G:HEM1000
|
0.0
|
17.7
|
1.0
|
|
O2
|
G:NO22000
|
1.7
|
28.8
|
1.0
|
|
NC
|
G:HEM1000
|
1.9
|
16.8
|
1.0
|
|
ND
|
G:HEM1000
|
2.1
|
16.1
|
1.0
|
|
NA
|
G:HEM1000
|
2.1
|
19.3
|
1.0
|
|
NB
|
G:HEM1000
|
2.1
|
19.5
|
1.0
|
|
NE2
|
G:HIS170
|
2.3
|
19.3
|
1.0
|
|
N
|
G:NO22000
|
2.5
|
28.0
|
1.0
|
|
C4C
|
G:HEM1000
|
2.9
|
16.3
|
1.0
|
|
C1D
|
G:HEM1000
|
3.0
|
15.7
|
1.0
|
|
CE1
|
G:HIS170
|
3.0
|
21.2
|
1.0
|
|
C1C
|
G:HEM1000
|
3.0
|
17.6
|
1.0
|
|
C4A
|
G:HEM1000
|
3.1
|
20.2
|
1.0
|
|
C1B
|
G:HEM1000
|
3.1
|
21.9
|
1.0
|
|
C4D
|
G:HEM1000
|
3.1
|
16.7
|
1.0
|
|
C4B
|
G:HEM1000
|
3.1
|
20.1
|
1.0
|
|
C1A
|
G:HEM1000
|
3.1
|
19.4
|
1.0
|
|
CHD
|
G:HEM1000
|
3.3
|
15.7
|
1.0
|
|
CHB
|
G:HEM1000
|
3.5
|
21.9
|
1.0
|
|
CHA
|
G:HEM1000
|
3.5
|
18.9
|
1.0
|
|
CHC
|
G:HEM1000
|
3.5
|
18.1
|
1.0
|
|
CD2
|
G:HIS170
|
3.5
|
21.0
|
1.0
|
|
O1
|
G:NO22000
|
3.6
|
28.2
|
1.0
|
|
NH2
|
G:ARG183
|
4.0
|
27.8
|
1.0
|
|
C3C
|
G:HEM1000
|
4.1
|
16.5
|
1.0
|
|
NE
|
G:ARG183
|
4.2
|
27.8
|
1.0
|
|
C2C
|
G:HEM1000
|
4.2
|
16.3
|
1.0
|
|
ND1
|
G:HIS170
|
4.2
|
20.2
|
1.0
|
|
C2D
|
G:HEM1000
|
4.3
|
15.7
|
1.0
|
|
C3B
|
G:HEM1000
|
4.3
|
22.7
|
1.0
|
|
C3A
|
G:HEM1000
|
4.3
|
21.1
|
1.0
|
|
C3D
|
G:HEM1000
|
4.3
|
16.6
|
1.0
|
|
C2A
|
G:HEM1000
|
4.3
|
20.0
|
1.0
|
|
C2B
|
G:HEM1000
|
4.3
|
22.6
|
1.0
|
|
CG
|
G:HIS170
|
4.5
|
20.6
|
1.0
|
|
CZ
|
G:ARG183
|
4.5
|
29.1
|
1.0
|
|
Iron binding site 8 out
of 20 in 3q08
Go back to
Iron Binding Sites List in 3q08
Iron binding site 8 out
of 20 in the Crystal Structure of Chlorite Dismutase From D. Aromatica at pH 6.5
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Crystal Structure of Chlorite Dismutase From D. Aromatica at pH 6.5 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Fe1000
b:11.8
occ:1.00
|
FE
|
H:HEM1000
|
0.0
|
11.8
|
1.0
|
|
O2
|
H:NO22000
|
1.7
|
21.4
|
1.0
|
|
NC
|
H:HEM1000
|
1.8
|
10.4
|
1.0
|
|
NB
|
H:HEM1000
|
1.9
|
12.2
|
1.0
|
|
ND
|
H:HEM1000
|
2.1
|
9.6
|
1.0
|
|
NA
|
H:HEM1000
|
2.1
|
12.3
|
1.0
|
|
NE2
|
H:HIS170
|
2.2
|
13.3
|
1.0
|
|
N
|
H:NO22000
|
2.7
|
21.6
|
1.0
|
|
C4C
|
H:HEM1000
|
2.8
|
10.7
|
1.0
|
|
C1C
|
H:HEM1000
|
2.9
|
11.9
|
1.0
|
|
C1B
|
H:HEM1000
|
2.9
|
14.8
|
1.0
|
|
C4B
|
H:HEM1000
|
3.0
|
13.2
|
1.0
|
|
C1D
|
H:HEM1000
|
3.0
|
9.0
|
1.0
|
|
CE1
|
H:HIS170
|
3.0
|
13.8
|
1.0
|
|
C4A
|
H:HEM1000
|
3.1
|
12.4
|
1.0
|
|
C4D
|
H:HEM1000
|
3.2
|
9.9
|
1.0
|
|
C1A
|
H:HEM1000
|
3.2
|
12.1
|
1.0
|
|
CHD
|
H:HEM1000
|
3.2
|
9.5
|
1.0
|
|
CD2
|
H:HIS170
|
3.3
|
14.7
|
1.0
|
|
CHB
|
H:HEM1000
|
3.3
|
13.9
|
1.0
|
|
CHC
|
H:HEM1000
|
3.4
|
12.1
|
1.0
|
|
CHA
|
H:HEM1000
|
3.6
|
11.0
|
1.0
|
|
O1
|
H:NO22000
|
3.7
|
21.4
|
1.0
|
|
NH2
|
H:ARG183
|
4.0
|
21.4
|
1.0
|
|
NE
|
H:ARG183
|
4.1
|
19.4
|
1.0
|
|
C3C
|
H:HEM1000
|
4.1
|
11.1
|
1.0
|
|
C2C
|
H:HEM1000
|
4.1
|
11.1
|
1.0
|
|
C3B
|
H:HEM1000
|
4.2
|
16.2
|
1.0
|
|
ND1
|
H:HIS170
|
4.2
|
12.8
|
1.0
|
|
C2B
|
H:HEM1000
|
4.2
|
15.6
|
1.0
|
|
C2D
|
H:HEM1000
|
4.3
|
9.0
|
1.0
|
|
C3A
|
H:HEM1000
|
4.3
|
14.0
|
1.0
|
|
CG
|
H:HIS170
|
4.4
|
14.2
|
1.0
|
|
C3D
|
H:HEM1000
|
4.4
|
9.5
|
1.0
|
|
C2A
|
H:HEM1000
|
4.4
|
13.7
|
1.0
|
|
CZ
|
H:ARG183
|
4.5
|
21.5
|
1.0
|
|
Iron binding site 9 out
of 20 in 3q08
Go back to
Iron Binding Sites List in 3q08
Iron binding site 9 out
of 20 in the Crystal Structure of Chlorite Dismutase From D. Aromatica at pH 6.5
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Crystal Structure of Chlorite Dismutase From D. Aromatica at pH 6.5 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Fe1000
b:11.9
occ:1.00
|
FE
|
I:HEM1000
|
0.0
|
11.9
|
1.0
|
|
O2
|
I:NO22000
|
1.8
|
21.8
|
1.0
|
|
NC
|
I:HEM1000
|
1.9
|
11.6
|
1.0
|
|
NB
|
I:HEM1000
|
2.0
|
13.6
|
1.0
|
|
ND
|
I:HEM1000
|
2.1
|
11.5
|
1.0
|
|
NA
|
I:HEM1000
|
2.1
|
13.0
|
1.0
|
|
NE2
|
I:HIS170
|
2.3
|
13.6
|
1.0
|
|
N
|
I:NO22000
|
2.7
|
21.7
|
1.0
|
|
C4C
|
I:HEM1000
|
2.9
|
10.4
|
1.0
|
|
C1C
|
I:HEM1000
|
3.0
|
12.4
|
1.0
|
|
C4B
|
I:HEM1000
|
3.0
|
14.5
|
1.0
|
|
C1B
|
I:HEM1000
|
3.0
|
15.3
|
1.0
|
|
C1D
|
I:HEM1000
|
3.0
|
9.8
|
1.0
|
|
C4A
|
I:HEM1000
|
3.1
|
14.1
|
1.0
|
|
C4D
|
I:HEM1000
|
3.1
|
10.7
|
1.0
|
|
CE1
|
I:HIS170
|
3.1
|
14.7
|
1.0
|
|
C1A
|
I:HEM1000
|
3.2
|
12.6
|
1.0
|
|
CHD
|
I:HEM1000
|
3.3
|
8.8
|
1.0
|
|
CD2
|
I:HIS170
|
3.4
|
17.1
|
1.0
|
|
CHC
|
I:HEM1000
|
3.4
|
12.9
|
1.0
|
|
CHB
|
I:HEM1000
|
3.4
|
15.2
|
1.0
|
|
CHA
|
I:HEM1000
|
3.5
|
11.6
|
1.0
|
|
O1
|
I:NO22000
|
3.8
|
21.5
|
1.0
|
|
NH2
|
I:ARG183
|
4.0
|
19.8
|
1.0
|
|
NE
|
I:ARG183
|
4.1
|
18.5
|
1.0
|
|
C3C
|
I:HEM1000
|
4.1
|
11.6
|
1.0
|
|
C3B
|
I:HEM1000
|
4.2
|
17.7
|
1.0
|
|
C2C
|
I:HEM1000
|
4.2
|
12.1
|
1.0
|
|
C2B
|
I:HEM1000
|
4.3
|
16.5
|
1.0
|
|
ND1
|
I:HIS170
|
4.3
|
13.6
|
1.0
|
|
C2D
|
I:HEM1000
|
4.3
|
9.3
|
1.0
|
|
C3D
|
I:HEM1000
|
4.3
|
8.9
|
1.0
|
|
C2A
|
I:HEM1000
|
4.4
|
13.6
|
1.0
|
|
C3A
|
I:HEM1000
|
4.4
|
15.2
|
1.0
|
|
CG
|
I:HIS170
|
4.4
|
15.3
|
1.0
|
|
CZ
|
I:ARG183
|
4.5
|
20.0
|
1.0
|
|
Iron binding site 10 out
of 20 in 3q08
Go back to
Iron Binding Sites List in 3q08
Iron binding site 10 out
of 20 in the Crystal Structure of Chlorite Dismutase From D. Aromatica at pH 6.5
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Crystal Structure of Chlorite Dismutase From D. Aromatica at pH 6.5 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Fe1000
b:17.6
occ:1.00
|
FE
|
J:HEM1000
|
0.0
|
17.6
|
1.0
|
|
O2
|
J:NO22000
|
1.8
|
26.0
|
1.0
|
|
NC
|
J:HEM1000
|
1.9
|
16.1
|
1.0
|
|
NB
|
J:HEM1000
|
2.0
|
17.1
|
1.0
|
|
NA
|
J:HEM1000
|
2.1
|
15.8
|
1.0
|
|
ND
|
J:HEM1000
|
2.1
|
13.9
|
1.0
|
|
NE2
|
J:HIS170
|
2.3
|
17.4
|
1.0
|
|
N
|
J:NO22000
|
2.7
|
26.4
|
1.0
|
|
C4C
|
J:HEM1000
|
2.9
|
15.6
|
1.0
|
|
CE1
|
J:HIS170
|
3.0
|
19.0
|
1.0
|
|
C1B
|
J:HEM1000
|
3.0
|
20.1
|
1.0
|
|
C4B
|
J:HEM1000
|
3.0
|
18.3
|
1.0
|
|
C1C
|
J:HEM1000
|
3.0
|
16.3
|
1.0
|
|
C1D
|
J:HEM1000
|
3.1
|
12.9
|
1.0
|
|
C4A
|
J:HEM1000
|
3.1
|
17.1
|
1.0
|
|
C1A
|
J:HEM1000
|
3.2
|
15.2
|
1.0
|
|
C4D
|
J:HEM1000
|
3.2
|
13.2
|
1.0
|
|
CHD
|
J:HEM1000
|
3.3
|
13.5
|
1.0
|
|
CHB
|
J:HEM1000
|
3.4
|
19.1
|
1.0
|
|
CD2
|
J:HIS170
|
3.4
|
19.4
|
1.0
|
|
CHC
|
J:HEM1000
|
3.4
|
17.1
|
1.0
|
|
CHA
|
J:HEM1000
|
3.6
|
14.8
|
1.0
|
|
O1
|
J:NO22000
|
3.7
|
26.0
|
1.0
|
|
C3C
|
J:HEM1000
|
4.1
|
16.2
|
1.0
|
|
NE
|
J:ARG183
|
4.1
|
23.4
|
1.0
|
|
C2C
|
J:HEM1000
|
4.2
|
15.7
|
1.0
|
|
ND1
|
J:HIS170
|
4.2
|
17.7
|
1.0
|
|
C3B
|
J:HEM1000
|
4.2
|
21.2
|
1.0
|
|
C2B
|
J:HEM1000
|
4.3
|
21.2
|
1.0
|
|
NH2
|
J:ARG183
|
4.3
|
23.4
|
1.0
|
|
C2D
|
J:HEM1000
|
4.3
|
12.8
|
1.0
|
|
C3A
|
J:HEM1000
|
4.3
|
17.2
|
1.0
|
|
C2A
|
J:HEM1000
|
4.4
|
15.6
|
1.0
|
|
C3D
|
J:HEM1000
|
4.4
|
12.7
|
1.0
|
|
CG
|
J:HIS170
|
4.5
|
18.1
|
1.0
|
|
CZ
|
J:ARG183
|
4.6
|
24.2
|
1.0
|
|
Reference:
B.R.Goblirsch,
B.R.Streit,
J.L.Dubois,
C.M.Wilmot.
Structural Features Promoting Dioxygen Production By Dechloromonas Aromatica Chlorite Dismutase. J.Biol.Inorg.Chem. V. 15 879 2010.
ISSN: ISSN 0949-8257
PubMed: 20386942
DOI: 10.1007/S00775-010-0651-0
Page generated: Sun Aug 4 18:29:32 2024
|
