Iron in PDB 3qjb: Human Hemoglobin A Mutant Alpha H58L Carbonmonoxy-Form
Protein crystallography data
The structure of Human Hemoglobin A Mutant Alpha H58L Carbonmonoxy-Form, PDB code: 3qjb
was solved by
I.Birukou,
J.Soman,
J.S.Olson,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
37.18 /
1.80
|
Space group
|
P 41 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
53.600,
53.600,
191.200,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
17 /
20.5
|
Iron Binding Sites:
The binding sites of Iron atom in the Human Hemoglobin A Mutant Alpha H58L Carbonmonoxy-Form
(pdb code 3qjb). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the
Human Hemoglobin A Mutant Alpha H58L Carbonmonoxy-Form, PDB code: 3qjb:
Jump to Iron binding site number:
1;
2;
Iron binding site 1 out
of 2 in 3qjb
Go back to
Iron Binding Sites List in 3qjb
Iron binding site 1 out
of 2 in the Human Hemoglobin A Mutant Alpha H58L Carbonmonoxy-Form
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Human Hemoglobin A Mutant Alpha H58L Carbonmonoxy-Form within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe142
b:13.5
occ:1.00
|
FE
|
A:HEM142
|
0.0
|
13.5
|
1.0
|
C
|
A:CMO143
|
1.8
|
9.3
|
1.0
|
NA
|
A:HEM142
|
2.0
|
11.3
|
1.0
|
NC
|
A:HEM142
|
2.0
|
10.6
|
1.0
|
NB
|
A:HEM142
|
2.1
|
9.8
|
1.0
|
ND
|
A:HEM142
|
2.1
|
14.2
|
1.0
|
NE2
|
A:HIS87
|
2.1
|
10.0
|
1.0
|
O
|
A:CMO143
|
2.9
|
11.7
|
1.0
|
C4A
|
A:HEM142
|
3.0
|
10.4
|
1.0
|
C4C
|
A:HEM142
|
3.0
|
12.2
|
1.0
|
CD2
|
A:HIS87
|
3.1
|
17.0
|
1.0
|
C1B
|
A:HEM142
|
3.1
|
12.9
|
1.0
|
C1A
|
A:HEM142
|
3.1
|
9.2
|
1.0
|
C1D
|
A:HEM142
|
3.1
|
10.7
|
1.0
|
C1C
|
A:HEM142
|
3.1
|
10.5
|
1.0
|
C4D
|
A:HEM142
|
3.1
|
14.3
|
1.0
|
C4B
|
A:HEM142
|
3.1
|
8.1
|
1.0
|
CE1
|
A:HIS87
|
3.1
|
12.6
|
1.0
|
CHB
|
A:HEM142
|
3.4
|
11.5
|
1.0
|
CHD
|
A:HEM142
|
3.4
|
11.4
|
1.0
|
CHA
|
A:HEM142
|
3.4
|
10.5
|
1.0
|
CHC
|
A:HEM142
|
3.5
|
10.7
|
1.0
|
ND1
|
A:HIS87
|
4.2
|
11.5
|
1.0
|
CG
|
A:HIS87
|
4.2
|
13.6
|
1.0
|
C3A
|
A:HEM142
|
4.3
|
10.6
|
1.0
|
C3C
|
A:HEM142
|
4.3
|
13.3
|
1.0
|
C2A
|
A:HEM142
|
4.3
|
13.1
|
1.0
|
C2C
|
A:HEM142
|
4.3
|
11.6
|
1.0
|
C2B
|
A:HEM142
|
4.3
|
11.0
|
1.0
|
C3B
|
A:HEM142
|
4.3
|
11.6
|
1.0
|
C2D
|
A:HEM142
|
4.3
|
12.2
|
1.0
|
C3D
|
A:HEM142
|
4.3
|
9.8
|
1.0
|
|
Iron binding site 2 out
of 2 in 3qjb
Go back to
Iron Binding Sites List in 3qjb
Iron binding site 2 out
of 2 in the Human Hemoglobin A Mutant Alpha H58L Carbonmonoxy-Form
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Human Hemoglobin A Mutant Alpha H58L Carbonmonoxy-Form within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe147
b:17.8
occ:1.00
|
FE
|
B:HEM147
|
0.0
|
17.8
|
1.0
|
C
|
B:CMO148
|
1.6
|
15.3
|
1.0
|
ND
|
B:HEM147
|
2.1
|
18.4
|
1.0
|
NA
|
B:HEM147
|
2.1
|
15.9
|
1.0
|
NE2
|
B:HIS92
|
2.1
|
15.1
|
1.0
|
NB
|
B:HEM147
|
2.1
|
19.1
|
1.0
|
NC
|
B:HEM147
|
2.1
|
12.0
|
1.0
|
O
|
B:CMO148
|
2.8
|
16.4
|
1.0
|
CE1
|
B:HIS92
|
3.0
|
18.4
|
1.0
|
C1A
|
B:HEM147
|
3.0
|
18.1
|
1.0
|
C4D
|
B:HEM147
|
3.1
|
16.3
|
1.0
|
C4A
|
B:HEM147
|
3.1
|
15.8
|
1.0
|
C1C
|
B:HEM147
|
3.1
|
16.2
|
1.0
|
C1D
|
B:HEM147
|
3.1
|
18.7
|
1.0
|
CD2
|
B:HIS92
|
3.1
|
18.3
|
1.0
|
C4B
|
B:HEM147
|
3.1
|
14.5
|
1.0
|
C4C
|
B:HEM147
|
3.1
|
13.5
|
1.0
|
C1B
|
B:HEM147
|
3.1
|
14.1
|
1.0
|
CHA
|
B:HEM147
|
3.4
|
18.1
|
1.0
|
CHC
|
B:HEM147
|
3.5
|
19.7
|
1.0
|
CHD
|
B:HEM147
|
3.5
|
14.7
|
1.0
|
CHB
|
B:HEM147
|
3.5
|
14.8
|
1.0
|
ND1
|
B:HIS92
|
4.2
|
17.7
|
1.0
|
CG
|
B:HIS92
|
4.2
|
16.6
|
1.0
|
C2A
|
B:HEM147
|
4.3
|
15.4
|
1.0
|
C3A
|
B:HEM147
|
4.3
|
15.8
|
1.0
|
C3D
|
B:HEM147
|
4.3
|
18.4
|
1.0
|
C2C
|
B:HEM147
|
4.3
|
15.0
|
1.0
|
C3C
|
B:HEM147
|
4.3
|
16.3
|
1.0
|
C2D
|
B:HEM147
|
4.3
|
21.5
|
1.0
|
C3B
|
B:HEM147
|
4.3
|
15.9
|
1.0
|
C2B
|
B:HEM147
|
4.3
|
16.4
|
1.0
|
NE2
|
B:HIS63
|
4.5
|
19.2
|
1.0
|
CG2
|
B:VAL67
|
5.0
|
18.6
|
1.0
|
|
Reference:
I.Birukou,
J.Soman,
J.S.Olson.
Determination of Pathways For Oxygen Binding to Human Hba Thesis.
Page generated: Sun Aug 4 18:40:53 2024
|