Iron in PDB 3qm5: Blackfin Tuna Oxy-Myoglobin, Atomic Resolution

The structure of Blackfin Tuna Oxy-Myoglobin, Atomic Resolution, PDB code: 3qm5 was solved by V.S.De Serrano, M.M.Rodriguez, E.R.Schreiter, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	15.75 / 0.91
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	34.063, 51.989, 38.609, 90.00, 104.03, 90.00
R / Rfree (%)	12.7 / 14

The binding sites of Iron atom in the Blackfin Tuna Oxy-Myoglobin, Atomic Resolution (pdb code 3qm5). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Blackfin Tuna Oxy-Myoglobin, Atomic Resolution, PDB code: 3qm5:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the Blackfin Tuna Oxy-Myoglobin, Atomic Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Blackfin Tuna Oxy-Myoglobin, Atomic Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe201 b:4.9 occ:0.78 FE A:HEM201 0.0 4.9 0.8 FE A:HEM201 0.1 9.4 0.2 O A:HOH477 1.9 20.4 0.5 NB A:HEM201 1.9 9.9 0.2 NA A:HEM201 2.0 9.4 0.2 ND A:HEM201 2.0 5.3 0.8 O2 A:OXY202 2.0 7.0 0.6 NC A:HEM201 2.0 5.6 0.8 NA A:HEM201 2.0 5.1 0.8 NB A:HEM201 2.0 5.7 0.8 NC A:HEM201 2.1 10.8 0.2 NE2 A:HIS89 2.1 5.4 1.0 ND A:HEM201 2.1 10.9 0.2 O1 A:OXY202 3.0 18.5 0.6 C1B A:HEM201 3.0 9.7 0.2 C4B A:HEM201 3.0 10.2 0.2 C4A A:HEM201 3.0 9.8 0.2 C1D A:HEM201 3.0 5.6 0.8 C1A A:HEM201 3.0 10.7 0.2 C1A A:HEM201 3.0 5.1 0.8 C4A A:HEM201 3.0 5.7 0.8 C4D A:HEM201 3.1 4.9 0.8 CE1 A:HIS89 3.1 6.8 1.0 C1C A:HEM201 3.1 6.5 0.8 C1C A:HEM201 3.1 10.8 0.2 C4B A:HEM201 3.1 6.6 0.8 C1B A:HEM201 3.1 6.3 0.8 C4C A:HEM201 3.1 6.0 0.8 C4D A:HEM201 3.1 10.4 0.2 C4C A:HEM201 3.1 10.8 0.2 CD2 A:HIS89 3.1 5.3 1.0 C1D A:HEM201 3.1 11.1 0.2 CHB A:HEM201 3.3 10.3 0.2 CHC A:HEM201 3.4 11.9 0.2 CHA A:HEM201 3.4 5.4 0.8 CHC A:HEM201 3.4 7.7 0.8 CHD A:HEM201 3.4 6.0 0.8 CHB A:HEM201 3.4 6.1 0.8 CHA A:HEM201 3.4 10.1 0.2 CHD A:HEM201 3.5 11.1 0.2 C2B A:HEM201 4.2 10.0 0.2 C3B A:HEM201 4.2 10.1 0.2 ND1 A:HIS89 4.2 7.0 1.0 C2A A:HEM201 4.2 11.1 0.2 C3A A:HEM201 4.2 10.9 0.2 C3A A:HEM201 4.3 6.0 0.8 CG A:HIS89 4.3 5.0 1.0 C3D A:HEM201 4.3 5.4 0.8 C2A A:HEM201 4.3 6.0 0.8 C2C A:HEM201 4.3 6.7 0.8 C3C A:HEM201 4.3 6.4 0.8 C2D A:HEM201 4.3 5.7 0.8 NE2 A:HIS60 4.3 9.0 1.0 C3B A:HEM201 4.3 7.5 0.8 C2C A:HEM201 4.3 10.9 0.2 C2B A:HEM201 4.3 7.0 0.8 C3C A:HEM201 4.3 11.3 0.2 C3D A:HEM201 4.4 10.8 0.2 C2D A:HEM201 4.4 11.7 0.2 CG2 A:VAL64 4.5 8.8 1.0 CE1 A:HIS60 4.8 9.3 1.0

Iron binding site 2 out of 2 in the Blackfin Tuna Oxy-Myoglobin, Atomic Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Blackfin Tuna Oxy-Myoglobin, Atomic Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe201 b:9.4 occ:0.22 FE A:HEM201 0.0 9.4 0.2 FE A:HEM201 0.1 4.9 0.8 NE2 A:HIS89 2.0 5.4 1.0 NA A:HEM201 2.0 5.1 0.8 NB A:HEM201 2.0 9.9 0.2 NB A:HEM201 2.0 5.7 0.8 NC A:HEM201 2.0 10.8 0.2 NA A:HEM201 2.0 9.4 0.2 O A:HOH477 2.1 20.4 0.5 ND A:HEM201 2.1 10.9 0.2 ND A:HEM201 2.1 5.3 0.8 NC A:HEM201 2.1 5.6 0.8 O2 A:OXY202 2.1 7.0 0.6 CE1 A:HIS89 2.9 6.8 1.0 C4A A:HEM201 3.0 5.7 0.8 C1B A:HEM201 3.0 6.3 0.8 C4B A:HEM201 3.0 10.2 0.2 C1A A:HEM201 3.0 5.1 0.8 C1C A:HEM201 3.0 10.8 0.2 C4B A:HEM201 3.0 6.6 0.8 C1B A:HEM201 3.0 9.7 0.2 CD2 A:HIS89 3.1 5.3 1.0 C1A A:HEM201 3.1 10.7 0.2 C4C A:HEM201 3.1 10.8 0.2 C4D A:HEM201 3.1 10.4 0.2 C1D A:HEM201 3.1 11.1 0.2 C4A A:HEM201 3.1 9.8 0.2 C4D A:HEM201 3.1 4.9 0.8 O1 A:OXY202 3.1 18.5 0.6 C1C A:HEM201 3.1 6.5 0.8 C1D A:HEM201 3.1 5.6 0.8 C4C A:HEM201 3.1 6.0 0.8 CHB A:HEM201 3.4 6.1 0.8 CHC A:HEM201 3.4 11.9 0.2 CHA A:HEM201 3.4 5.4 0.8 CHB A:HEM201 3.4 10.3 0.2 CHD A:HEM201 3.4 11.1 0.2 CHC A:HEM201 3.4 7.7 0.8 CHA A:HEM201 3.4 10.1 0.2 CHD A:HEM201 3.5 6.0 0.8 ND1 A:HIS89 4.1 7.0 1.0 CG A:HIS89 4.2 5.0 1.0 C3A A:HEM201 4.2 6.0 0.8 C2A A:HEM201 4.2 6.0 0.8 C2B A:HEM201 4.3 7.0 0.8 C3B A:HEM201 4.3 10.1 0.2 C2B A:HEM201 4.3 10.0 0.2 C2C A:HEM201 4.3 10.9 0.2 C3B A:HEM201 4.3 7.5 0.8 C3C A:HEM201 4.3 11.3 0.2 C2A A:HEM201 4.3 11.1 0.2 C3A A:HEM201 4.3 10.9 0.2 C2D A:HEM201 4.3 11.7 0.2 C3D A:HEM201 4.3 10.8 0.2 C3D A:HEM201 4.3 5.4 0.8 C2C A:HEM201 4.3 6.7 0.8 C2D A:HEM201 4.4 5.7 0.8 C3C A:HEM201 4.4 6.4 0.8 NE2 A:HIS60 4.4 9.0 1.0 CG2 A:VAL64 4.6 8.8 1.0 CE1 A:HIS60 4.8 9.3 1.0

V.S.De Serrano, M.M.Rodriguez, E.R.Schreiter. High Resolution Structures of Blackfin Tuna Myoglobin To Be Published.