Iron in PDB 3qm6: Blackfin Tuna Deoxy-Myoglobin, Atomic Resolution

The structure of Blackfin Tuna Deoxy-Myoglobin, Atomic Resolution, PDB code: 3qm6 was solved by V.S.De Serrano, E.R.Schreiter, M.M.Rodriguez, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	15.40 / 0.91
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	34.235, 52.158, 38.451, 90.00, 104.59, 90.00
R / Rfree (%)	13.3 / 14.5

The binding sites of Iron atom in the Blackfin Tuna Deoxy-Myoglobin, Atomic Resolution (pdb code 3qm6). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Blackfin Tuna Deoxy-Myoglobin, Atomic Resolution, PDB code: 3qm6:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the Blackfin Tuna Deoxy-Myoglobin, Atomic Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Blackfin Tuna Deoxy-Myoglobin, Atomic Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe201 b:5.6 occ:0.65 FE A:HEM201 0.0 5.6 0.7 FE A:HEM201 0.2 5.2 0.3 NB A:HEM201 1.8 5.0 0.3 ND A:HEM201 2.0 6.1 0.7 NB A:HEM201 2.0 6.1 0.7 NA A:HEM201 2.0 5.5 0.7 NC A:HEM201 2.1 6.8 0.7 NA A:HEM201 2.1 4.7 0.3 NC A:HEM201 2.1 6.2 0.3 NE2 A:HIS89 2.2 5.3 1.0 ND A:HEM201 2.3 6.0 0.3 C1B A:HEM201 2.9 5.9 0.3 C4B A:HEM201 2.9 4.8 0.3 C1D A:HEM201 3.0 6.5 0.7 C1C A:HEM201 3.0 5.3 0.3 C4D A:HEM201 3.1 5.0 0.7 C1A A:HEM201 3.1 5.6 0.7 C4B A:HEM201 3.1 8.0 0.7 C4A A:HEM201 3.1 5.8 0.3 C4A A:HEM201 3.1 5.8 0.7 C1B A:HEM201 3.1 6.1 0.7 C4C A:HEM201 3.1 6.8 0.7 C1C A:HEM201 3.1 8.5 0.7 C1A A:HEM201 3.2 6.5 0.3 CE1 A:HIS89 3.2 6.0 1.0 C4C A:HEM201 3.2 7.2 0.3 CD2 A:HIS89 3.2 5.2 1.0 C4D A:HEM201 3.3 6.2 0.3 C1D A:HEM201 3.3 6.6 0.3 CHC A:HEM201 3.3 5.9 0.3 CHB A:HEM201 3.4 5.6 0.3 CHD A:HEM201 3.4 7.2 0.7 CHA A:HEM201 3.4 6.9 0.7 CHB A:HEM201 3.4 6.7 0.7 CHC A:HEM201 3.5 6.9 0.7 CHA A:HEM201 3.6 5.9 0.3 CHD A:HEM201 3.6 5.9 0.3 CG2 A:VAL64 4.1 7.4 1.0 C3B A:HEM201 4.2 5.9 0.3 C2B A:HEM201 4.2 4.5 0.3 C2A A:HEM201 4.2 7.7 0.3 C2D A:HEM201 4.2 6.9 0.7 C2A A:HEM201 4.3 7.3 0.3 C3B A:HEM201 4.3 7.9 0.7 C2B A:HEM201 4.3 8.5 0.7 C3A A:HEM201 4.3 6.8 0.7 C3D A:HEM201 4.3 7.0 0.7 C3C A:HEM201 4.3 9.4 0.7 C3A A:HEM201 4.3 5.4 0.3 C2A A:HEM201 4.3 7.0 0.3 ND1 A:HIS89 4.3 6.8 1.0 C2C A:HEM201 4.3 8.0 0.7 NE2 A:HIS60 4.4 7.3 0.7 C2C A:HEM201 4.4 5.7 0.3 CG A:HIS89 4.4 5.0 1.0 C3C A:HEM201 4.4 6.4 0.3 NE2 A:HIS60 4.4 11.7 0.3 C2D A:HEM201 4.5 6.6 0.3 C3D A:HEM201 4.5 5.5 0.3 CE1 A:HIS60 4.9 8.5 0.7 CD2 A:HIS93 5.0 8.8 1.0

Iron binding site 2 out of 2 in the Blackfin Tuna Deoxy-Myoglobin, Atomic Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Blackfin Tuna Deoxy-Myoglobin, Atomic Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe201 b:5.2 occ:0.35 FE A:HEM201 0.0 5.2 0.3 FE A:HEM201 0.2 5.6 0.7 NA A:HEM201 1.9 5.5 0.7 NB A:HEM201 2.0 6.1 0.7 NB A:HEM201 2.0 5.0 0.3 ND A:HEM201 2.1 6.1 0.7 ND A:HEM201 2.1 6.0 0.3 NE2 A:HIS89 2.1 5.3 1.0 NA A:HEM201 2.1 4.7 0.3 NC A:HEM201 2.1 6.2 0.3 NC A:HEM201 2.3 6.8 0.7 C1A A:HEM201 2.9 5.6 0.7 C4A A:HEM201 2.9 5.8 0.7 CE1 A:HIS89 3.0 6.0 1.0 C1B A:HEM201 3.0 6.1 0.7 C4D A:HEM201 3.0 5.0 0.7 C1C A:HEM201 3.1 5.3 0.3 C4B A:HEM201 3.1 4.8 0.3 C1B A:HEM201 3.1 5.9 0.3 C4D A:HEM201 3.1 6.2 0.3 C1D A:HEM201 3.1 6.6 0.3 C1D A:HEM201 3.1 6.5 0.7 C1A A:HEM201 3.1 6.5 0.3 C4C A:HEM201 3.1 7.2 0.3 C4B A:HEM201 3.1 8.0 0.7 C4A A:HEM201 3.2 5.8 0.3 CD2 A:HIS89 3.2 5.2 1.0 CHB A:HEM201 3.3 6.7 0.7 CHA A:HEM201 3.3 6.9 0.7 C4C A:HEM201 3.3 6.8 0.7 C1C A:HEM201 3.3 8.5 0.7 CHC A:HEM201 3.4 5.9 0.3 CHD A:HEM201 3.5 5.9 0.3 CHA A:HEM201 3.5 5.9 0.3 CHB A:HEM201 3.5 5.6 0.3 CHD A:HEM201 3.5 7.2 0.7 CHC A:HEM201 3.6 6.9 0.7 C2A A:HEM201 4.1 7.7 0.3 C2A A:HEM201 4.1 7.3 0.3 C3A A:HEM201 4.1 6.8 0.7 ND1 A:HIS89 4.2 6.8 1.0 CG2 A:VAL64 4.2 7.4 1.0 C2B A:HEM201 4.3 8.5 0.7 CG A:HIS89 4.3 5.0 1.0 C2D A:HEM201 4.3 6.6 0.3 C3D A:HEM201 4.3 7.0 0.7 C2D A:HEM201 4.3 6.9 0.7 C3B A:HEM201 4.3 7.9 0.7 C2A A:HEM201 4.3 7.0 0.3 C3D A:HEM201 4.3 5.5 0.3 C3B A:HEM201 4.3 5.9 0.3 C3C A:HEM201 4.4 6.4 0.3 C2C A:HEM201 4.4 5.7 0.3 C2B A:HEM201 4.4 4.5 0.3 C3A A:HEM201 4.4 5.4 0.3 NE2 A:HIS60 4.4 7.3 0.7 NE2 A:HIS60 4.5 11.7 0.3 C3C A:HEM201 4.5 9.4 0.7 C2C A:HEM201 4.5 8.0 0.7 CE1 A:HIS60 4.9 8.5 0.7 CD2 A:HIS93 4.9 8.8 1.0

V.S.De Serrano, E.R.Schreiter, M.M.Rodriguez. High Resolution Structures of Blackfin Tuna Myoglobin To Be Published.