Iron in PDB 3qm7: Blackfin Tuna Carbonmonoxy-Myoglobin, Atomic Resolution
Protein crystallography data
The structure of Blackfin Tuna Carbonmonoxy-Myoglobin, Atomic Resolution, PDB code: 3qm7
was solved by
V.S.De Serrano,
M.M.Rodriguez,
E.R.Schreiter,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
17.36 /
0.96
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
34.286,
51.714,
38.633,
90.00,
105.09,
90.00
|
R / Rfree (%)
|
15.2 /
17.2
|
Iron Binding Sites:
The binding sites of Iron atom in the Blackfin Tuna Carbonmonoxy-Myoglobin, Atomic Resolution
(pdb code 3qm7). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the
Blackfin Tuna Carbonmonoxy-Myoglobin, Atomic Resolution, PDB code: 3qm7:
Jump to Iron binding site number:
1;
2;
Iron binding site 1 out
of 2 in 3qm7
Go back to
Iron Binding Sites List in 3qm7
Iron binding site 1 out
of 2 in the Blackfin Tuna Carbonmonoxy-Myoglobin, Atomic Resolution
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Blackfin Tuna Carbonmonoxy-Myoglobin, Atomic Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe201
b:5.9
occ:0.76
|
FE
|
A:HEM201
|
0.0
|
5.9
|
0.8
|
FE
|
A:HEM201
|
0.1
|
8.0
|
0.2
|
C
|
A:CMO202
|
1.8
|
9.5
|
1.0
|
NC
|
A:HEM201
|
2.0
|
8.0
|
0.2
|
NC
|
A:HEM201
|
2.0
|
6.3
|
0.8
|
ND
|
A:HEM201
|
2.0
|
6.6
|
0.8
|
NA
|
A:HEM201
|
2.0
|
6.0
|
0.8
|
NB
|
A:HEM201
|
2.0
|
6.3
|
0.8
|
NB
|
A:HEM201
|
2.0
|
8.2
|
0.2
|
NE2
|
A:HIS89
|
2.1
|
5.7
|
1.0
|
NA
|
A:HEM201
|
2.2
|
7.7
|
0.2
|
ND
|
A:HEM201
|
2.2
|
8.1
|
0.2
|
O
|
A:CMO202
|
2.9
|
11.4
|
1.0
|
C1C
|
A:HEM201
|
3.0
|
7.9
|
0.2
|
C4C
|
A:HEM201
|
3.0
|
8.5
|
0.2
|
C1D
|
A:HEM201
|
3.0
|
7.0
|
0.8
|
C4C
|
A:HEM201
|
3.0
|
7.2
|
0.8
|
C4A
|
A:HEM201
|
3.0
|
6.3
|
0.8
|
C4B
|
A:HEM201
|
3.0
|
7.0
|
0.8
|
C1C
|
A:HEM201
|
3.0
|
7.7
|
0.8
|
C1B
|
A:HEM201
|
3.0
|
6.4
|
0.8
|
C4B
|
A:HEM201
|
3.0
|
8.8
|
0.2
|
CE1
|
A:HIS89
|
3.0
|
6.7
|
1.0
|
C4D
|
A:HEM201
|
3.0
|
6.8
|
0.8
|
C1A
|
A:HEM201
|
3.1
|
6.4
|
0.8
|
C1B
|
A:HEM201
|
3.1
|
8.2
|
0.2
|
CD2
|
A:HIS89
|
3.1
|
5.7
|
1.0
|
C1D
|
A:HEM201
|
3.1
|
8.8
|
0.2
|
C4A
|
A:HEM201
|
3.1
|
7.8
|
0.2
|
C1A
|
A:HEM201
|
3.2
|
8.2
|
0.2
|
C4D
|
A:HEM201
|
3.2
|
8.8
|
0.2
|
CHC
|
A:HEM201
|
3.4
|
7.3
|
0.2
|
CHD
|
A:HEM201
|
3.4
|
7.2
|
0.8
|
CHB
|
A:HEM201
|
3.4
|
6.6
|
0.8
|
CHA
|
A:HEM201
|
3.4
|
6.8
|
0.8
|
CHC
|
A:HEM201
|
3.4
|
8.7
|
0.8
|
CHD
|
A:HEM201
|
3.4
|
8.8
|
0.2
|
CHB
|
A:HEM201
|
3.5
|
8.2
|
0.2
|
CHA
|
A:HEM201
|
3.6
|
8.4
|
0.2
|
C2C
|
A:HEM201
|
4.2
|
9.4
|
0.2
|
ND1
|
A:HIS89
|
4.2
|
6.9
|
1.0
|
C3C
|
A:HEM201
|
4.2
|
8.9
|
0.2
|
C2C
|
A:HEM201
|
4.2
|
8.4
|
0.8
|
C2D
|
A:HEM201
|
4.2
|
7.9
|
0.8
|
C3C
|
A:HEM201
|
4.3
|
7.7
|
0.8
|
C3A
|
A:HEM201
|
4.3
|
7.3
|
0.8
|
CG
|
A:HIS89
|
4.3
|
5.6
|
1.0
|
C2B
|
A:HEM201
|
4.3
|
7.1
|
0.8
|
C3B
|
A:HEM201
|
4.3
|
9.7
|
0.2
|
C2A
|
A:HEM201
|
4.3
|
6.8
|
0.8
|
C3B
|
A:HEM201
|
4.3
|
8.1
|
0.8
|
C2B
|
A:HEM201
|
4.3
|
9.3
|
0.2
|
C3D
|
A:HEM201
|
4.3
|
7.9
|
0.8
|
C2D
|
A:HEM201
|
4.4
|
9.4
|
0.2
|
C3A
|
A:HEM201
|
4.4
|
8.9
|
0.2
|
C2A
|
A:HEM201
|
4.4
|
7.9
|
0.2
|
C3D
|
A:HEM201
|
4.4
|
8.7
|
0.2
|
NE2
|
A:HIS60
|
4.4
|
7.6
|
0.5
|
CG2
|
A:VAL64
|
4.5
|
10.5
|
1.0
|
O
|
A:HOH394
|
4.8
|
21.7
|
0.6
|
CD2
|
A:HIS93
|
5.0
|
8.0
|
1.0
|
|
Iron binding site 2 out
of 2 in 3qm7
Go back to
Iron Binding Sites List in 3qm7
Iron binding site 2 out
of 2 in the Blackfin Tuna Carbonmonoxy-Myoglobin, Atomic Resolution
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Blackfin Tuna Carbonmonoxy-Myoglobin, Atomic Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe201
b:8.0
occ:0.24
|
FE
|
A:HEM201
|
0.0
|
8.0
|
0.2
|
FE
|
A:HEM201
|
0.1
|
5.9
|
0.8
|
C
|
A:CMO202
|
1.7
|
9.5
|
1.0
|
ND
|
A:HEM201
|
1.9
|
6.6
|
0.8
|
NA
|
A:HEM201
|
2.0
|
6.0
|
0.8
|
NC
|
A:HEM201
|
2.1
|
6.3
|
0.8
|
NA
|
A:HEM201
|
2.1
|
7.7
|
0.2
|
NC
|
A:HEM201
|
2.1
|
8.0
|
0.2
|
NB
|
A:HEM201
|
2.1
|
8.2
|
0.2
|
NB
|
A:HEM201
|
2.1
|
6.3
|
0.8
|
ND
|
A:HEM201
|
2.1
|
8.1
|
0.2
|
NE2
|
A:HIS89
|
2.2
|
5.7
|
1.0
|
O
|
A:CMO202
|
2.8
|
11.4
|
1.0
|
C4D
|
A:HEM201
|
2.9
|
6.8
|
0.8
|
C1D
|
A:HEM201
|
3.0
|
7.0
|
0.8
|
C1A
|
A:HEM201
|
3.0
|
6.4
|
0.8
|
C4A
|
A:HEM201
|
3.0
|
6.3
|
0.8
|
C4C
|
A:HEM201
|
3.0
|
7.2
|
0.8
|
C4C
|
A:HEM201
|
3.1
|
8.5
|
0.2
|
C4A
|
A:HEM201
|
3.1
|
7.8
|
0.2
|
C1C
|
A:HEM201
|
3.1
|
7.9
|
0.2
|
C1A
|
A:HEM201
|
3.1
|
8.2
|
0.2
|
C1B
|
A:HEM201
|
3.1
|
8.2
|
0.2
|
C1D
|
A:HEM201
|
3.1
|
8.8
|
0.2
|
C1B
|
A:HEM201
|
3.1
|
6.4
|
0.8
|
CE1
|
A:HIS89
|
3.1
|
6.7
|
1.0
|
C4B
|
A:HEM201
|
3.1
|
8.8
|
0.2
|
C1C
|
A:HEM201
|
3.1
|
7.7
|
0.8
|
C4D
|
A:HEM201
|
3.1
|
8.8
|
0.2
|
C4B
|
A:HEM201
|
3.1
|
7.0
|
0.8
|
CD2
|
A:HIS89
|
3.2
|
5.7
|
1.0
|
CHA
|
A:HEM201
|
3.3
|
6.8
|
0.8
|
CHD
|
A:HEM201
|
3.4
|
7.2
|
0.8
|
CHB
|
A:HEM201
|
3.4
|
6.6
|
0.8
|
CHD
|
A:HEM201
|
3.4
|
8.8
|
0.2
|
CHB
|
A:HEM201
|
3.5
|
8.2
|
0.2
|
CHA
|
A:HEM201
|
3.5
|
8.4
|
0.2
|
CHC
|
A:HEM201
|
3.5
|
7.3
|
0.2
|
CHC
|
A:HEM201
|
3.5
|
8.7
|
0.8
|
C2D
|
A:HEM201
|
4.2
|
7.9
|
0.8
|
C3D
|
A:HEM201
|
4.2
|
7.9
|
0.8
|
C2A
|
A:HEM201
|
4.2
|
6.8
|
0.8
|
C3A
|
A:HEM201
|
4.2
|
7.3
|
0.8
|
ND1
|
A:HIS89
|
4.3
|
6.9
|
1.0
|
C3C
|
A:HEM201
|
4.3
|
8.9
|
0.2
|
C2A
|
A:HEM201
|
4.3
|
7.9
|
0.2
|
C3C
|
A:HEM201
|
4.3
|
7.7
|
0.8
|
NE2
|
A:HIS60
|
4.3
|
7.6
|
0.5
|
C3A
|
A:HEM201
|
4.3
|
8.9
|
0.2
|
C2C
|
A:HEM201
|
4.3
|
9.4
|
0.2
|
C2C
|
A:HEM201
|
4.3
|
8.4
|
0.8
|
C2B
|
A:HEM201
|
4.3
|
9.3
|
0.2
|
C3B
|
A:HEM201
|
4.3
|
9.7
|
0.2
|
C3D
|
A:HEM201
|
4.3
|
8.7
|
0.2
|
C2D
|
A:HEM201
|
4.3
|
9.4
|
0.2
|
C2B
|
A:HEM201
|
4.4
|
7.1
|
0.8
|
CG
|
A:HIS89
|
4.4
|
5.6
|
1.0
|
C3B
|
A:HEM201
|
4.4
|
8.1
|
0.8
|
CG2
|
A:VAL64
|
4.4
|
10.5
|
1.0
|
O
|
A:HOH394
|
4.7
|
21.7
|
0.6
|
CD2
|
A:HIS93
|
5.0
|
8.0
|
1.0
|
|
Reference:
V.S.De Serrano,
M.M.Rodriguez,
E.R.Schreiter.
High Resolution Structures of Blackfin Tuna Myoglobin To Be Published.
Page generated: Sun Aug 4 18:50:37 2024
|