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Iron in PDB 3qns: Dypb From Rhodococcus Jostii RHA1, Crystal Form 2

Protein crystallography data

The structure of Dypb From Rhodococcus Jostii RHA1, Crystal Form 2, PDB code: 3qns was solved by J.C.Grigg, J.N.Roberts, R.Singh, L.D.Eltis, M.E.P.Murphy, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.93 / 1.40
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 127.699, 127.699, 178.242, 90.00, 90.00, 120.00
R / Rfree (%) 13 / 14.8

Iron Binding Sites:

The binding sites of Iron atom in the Dypb From Rhodococcus Jostii RHA1, Crystal Form 2 (pdb code 3qns). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Dypb From Rhodococcus Jostii RHA1, Crystal Form 2, PDB code: 3qns:

Iron binding site 1 out of 1 in 3qns

Go back to Iron Binding Sites List in 3qns
Iron binding site 1 out of 1 in the Dypb From Rhodococcus Jostii RHA1, Crystal Form 2


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Dypb From Rhodococcus Jostii RHA1, Crystal Form 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe351

b:10.4
occ:1.00
FE A:HEM351 0.0 10.4 1.0
NB A:HEM351 2.0 11.1 1.0
NE2 A:HIS226 2.0 9.1 1.0
NA A:HEM351 2.0 9.2 1.0
ND A:HEM351 2.0 9.2 1.0
NC A:HEM351 2.0 9.6 1.0
O A:HOH507 2.1 17.1 1.0
CE1 A:HIS226 3.0 9.4 1.0
CD2 A:HIS226 3.0 9.9 1.0
C1B A:HEM351 3.0 10.9 1.0
C4B A:HEM351 3.0 11.5 1.0
C1D A:HEM351 3.1 8.9 1.0
C4A A:HEM351 3.1 10.5 1.0
C4C A:HEM351 3.1 10.1 1.0
C1A A:HEM351 3.1 9.5 1.0
C4D A:HEM351 3.1 8.9 1.0
C1C A:HEM351 3.1 10.3 1.0
CHB A:HEM351 3.4 10.7 1.0
CHD A:HEM351 3.4 9.9 1.0
CHC A:HEM351 3.5 11.8 1.0
CHA A:HEM351 3.5 10.0 1.0
NH1 A:ARG244 4.1 15.2 1.0
ND1 A:HIS226 4.1 10.2 1.0
CG A:HIS226 4.2 9.8 1.0
O A:HOH406 4.3 11.2 0.4
C3B A:HEM351 4.3 12.8 1.0
C2B A:HEM351 4.3 12.2 1.0
C2A A:HEM351 4.3 9.4 1.0
C3A A:HEM351 4.3 10.7 1.0
C3C A:HEM351 4.3 10.1 1.0
C2C A:HEM351 4.3 10.4 1.0
C2D A:HEM351 4.3 9.5 1.0
C3D A:HEM351 4.3 10.8 1.0
OD1 A:ASN230 4.4 15.3 1.0
CD A:ARG244 4.7 14.3 1.0
CZ A:ARG244 4.9 14.3 1.0

Reference:

J.N.Roberts, R.Singh, J.C.Grigg, M.E.Murphy, T.D.Bugg, L.D.Eltis. Characterization of Dye-Decolorizing Peroxidases From Rhodococcus Jostii RHA1. Biochemistry V. 50 5108 2011.
ISSN: ISSN 0006-2960
PubMed: 21534572
DOI: 10.1021/BI200427H
Page generated: Sun Aug 4 18:52:42 2024

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