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Iron in PDB 3qy6: Crystal Structures of Ywqe From Bacillus Subtilis and Cpsb From Streptococcus Pneumoniae, Unique Metal-Dependent Tyrosine Phosphatases

Enzymatic activity of Crystal Structures of Ywqe From Bacillus Subtilis and Cpsb From Streptococcus Pneumoniae, Unique Metal-Dependent Tyrosine Phosphatases

All present enzymatic activity of Crystal Structures of Ywqe From Bacillus Subtilis and Cpsb From Streptococcus Pneumoniae, Unique Metal-Dependent Tyrosine Phosphatases:
3.1.3.48;

Protein crystallography data

The structure of Crystal Structures of Ywqe From Bacillus Subtilis and Cpsb From Streptococcus Pneumoniae, Unique Metal-Dependent Tyrosine Phosphatases, PDB code: 3qy6 was solved by H.S.Kim, S.J.Lee, H.J.Yoon, D.R.An, D.J.Kim, S.-J.Kim, S.W.Suh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.80
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 36.624, 59.641, 57.530, 90.00, 101.08, 90.00
R / Rfree (%) 21.6 / 25.6

Other elements in 3qy6:

The structure of Crystal Structures of Ywqe From Bacillus Subtilis and Cpsb From Streptococcus Pneumoniae, Unique Metal-Dependent Tyrosine Phosphatases also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structures of Ywqe From Bacillus Subtilis and Cpsb From Streptococcus Pneumoniae, Unique Metal-Dependent Tyrosine Phosphatases (pdb code 3qy6). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structures of Ywqe From Bacillus Subtilis and Cpsb From Streptococcus Pneumoniae, Unique Metal-Dependent Tyrosine Phosphatases, PDB code: 3qy6:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 3qy6

Go back to Iron Binding Sites List in 3qy6
Iron binding site 1 out of 2 in the Crystal Structures of Ywqe From Bacillus Subtilis and Cpsb From Streptococcus Pneumoniae, Unique Metal-Dependent Tyrosine Phosphatases


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structures of Ywqe From Bacillus Subtilis and Cpsb From Streptococcus Pneumoniae, Unique Metal-Dependent Tyrosine Phosphatases within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe263

b:30.3
occ:1.00
 O A:HOH349 1.8 44.9 1.0
NE2 A:HIS136 2.0 29.1 1.0
OE1 A:GLU80 2.1 26.0 1.0
OE1 A:GLU108 2.2 31.5 1.0
O A:HOH347 2.2 32.6 1.0
O A:HOH348 2.4 30.0 1.0
CD2 A:HIS136 3.0 30.6 1.0
CD A:GLU80 3.0 24.8 1.0
CE1 A:HIS136 3.1 29.9 1.0
CD A:GLU108 3.1 30.5 1.0
O A:HOH376 3.2 35.3 1.0
OE2 A:GLU80 3.2 29.5 1.0
CE1 A:HIS42 3.4 39.5 1.0
FE A:FE264 3.5 25.5 1.0
CG A:GLU108 3.7 27.2 1.0
O A:HOH405 3.8 47.2 1.0
O A:HOH374 3.8 47.9 1.0
OE2 A:GLU108 3.9 33.4 1.0
ND1 A:HIS136 4.2 29.9 1.0
CG A:HIS136 4.2 29.4 1.0
NE2 A:HIS42 4.2 41.7 1.0
ND1 A:HIS42 4.3 40.6 1.0
CG A:GLU80 4.4 26.5 1.0
OD2 A:ASP194 4.4 27.4 1.0
NE2 A:HIS5 4.6 21.6 1.0
CE1 A:HIS5 4.6 24.7 1.0
CB A:GLU108 4.7 27.3 1.0
MG A:MG265 4.9 38.0 1.0
OD1 A:ASP194 4.9 25.2 1.0

Iron binding site 2 out of 2 in 3qy6

Go back to Iron Binding Sites List in 3qy6
Iron binding site 2 out of 2 in the Crystal Structures of Ywqe From Bacillus Subtilis and Cpsb From Streptococcus Pneumoniae, Unique Metal-Dependent Tyrosine Phosphatases


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structures of Ywqe From Bacillus Subtilis and Cpsb From Streptococcus Pneumoniae, Unique Metal-Dependent Tyrosine Phosphatases within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe264

b:25.5
occ:1.00
 O A:HOH348 1.3 30.0 1.0
NE2 A:HIS7 2.0 26.0 1.0
OE2 A:GLU80 2.2 29.5 1.0
OD1 A:ASP194 2.2 25.2 1.0
NE2 A:HIS5 2.2 21.6 1.0
O A:HOH376 2.2 35.3 1.0
CD2 A:HIS7 3.0 25.6 1.0
CE1 A:HIS7 3.0 27.5 1.0
CD A:GLU80 3.0 24.8 1.0
CG A:ASP194 3.1 24.6 1.0
CD2 A:HIS5 3.1 25.0 1.0
CE1 A:HIS5 3.2 24.7 1.0
OD2 A:ASP194 3.3 27.4 1.0
OE1 A:GLU80 3.4 26.0 1.0
FE A:FE263 3.5 30.3 1.0
O A:HOH349 3.5 44.9 1.0
CE1 A:HIS42 4.1 39.5 1.0
NE2 A:HIS42 4.1 41.7 1.0
ND1 A:HIS7 4.1 27.5 1.0
CG A:HIS7 4.1 26.3 1.0
CE1 A:HIS196 4.2 32.0 1.0
O A:HOH405 4.2 47.2 1.0
ND1 A:HIS5 4.3 22.5 1.0
CG A:HIS5 4.3 22.2 1.0
CG A:GLU80 4.3 26.5 1.0
MG A:MG265 4.3 38.0 1.0
CB A:ASP194 4.4 25.2 1.0
CD2 A:HIS136 4.5 30.6 1.0
NE2 A:HIS136 4.6 29.1 1.0
CB A:GLU80 4.7 25.4 1.0
NE2 A:HIS196 4.7 33.8 1.0
CA A:ASP194 4.7 25.0 1.0
O A:HOH347 4.8 32.6 1.0
ND1 A:HIS42 4.9 40.6 1.0
CD2 A:HIS42 4.9 38.7 1.0

Reference:

H.S.Kim, S.J.Lee, H.J.Yoon, D.R.An, D.J.Kim, S.J.Kim, S.W.Suh. Crystal Structures of Ywqe From Bacillus Subtilis and Cpsb From Streptococcus Pneumoniae, Unique Metal-Dependent Tyrosine Phosphatases. J.Struct.Biol. V. 175 442 2011.
ISSN: ISSN 1047-8477
PubMed: 21605684
DOI: 10.1016/J.JSB.2011.05.007
Page generated: Sun Aug 4 18:56:09 2024

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