Atomistry » Iron » PDB 3qjt-3r0g » 3qy6
Atomistry »
  Iron »
    PDB 3qjt-3r0g »
      3qy6 »

Iron in PDB 3qy6: Crystal Structures of Ywqe From Bacillus Subtilis and Cpsb From Streptococcus Pneumoniae, Unique Metal-Dependent Tyrosine Phosphatases

Enzymatic activity of Crystal Structures of Ywqe From Bacillus Subtilis and Cpsb From Streptococcus Pneumoniae, Unique Metal-Dependent Tyrosine Phosphatases

All present enzymatic activity of Crystal Structures of Ywqe From Bacillus Subtilis and Cpsb From Streptococcus Pneumoniae, Unique Metal-Dependent Tyrosine Phosphatases:
3.1.3.48;

Protein crystallography data

The structure of Crystal Structures of Ywqe From Bacillus Subtilis and Cpsb From Streptococcus Pneumoniae, Unique Metal-Dependent Tyrosine Phosphatases, PDB code: 3qy6 was solved by H.S.Kim, S.J.Lee, H.J.Yoon, D.R.An, D.J.Kim, S.-J.Kim, S.W.Suh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.80
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 36.624, 59.641, 57.530, 90.00, 101.08, 90.00
R / Rfree (%) 21.6 / 25.6

Other elements in 3qy6:

The structure of Crystal Structures of Ywqe From Bacillus Subtilis and Cpsb From Streptococcus Pneumoniae, Unique Metal-Dependent Tyrosine Phosphatases also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structures of Ywqe From Bacillus Subtilis and Cpsb From Streptococcus Pneumoniae, Unique Metal-Dependent Tyrosine Phosphatases (pdb code 3qy6). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structures of Ywqe From Bacillus Subtilis and Cpsb From Streptococcus Pneumoniae, Unique Metal-Dependent Tyrosine Phosphatases, PDB code: 3qy6:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 3qy6

Go back to Iron Binding Sites List in 3qy6
Iron binding site 1 out of 2 in the Crystal Structures of Ywqe From Bacillus Subtilis and Cpsb From Streptococcus Pneumoniae, Unique Metal-Dependent Tyrosine Phosphatases


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structures of Ywqe From Bacillus Subtilis and Cpsb From Streptococcus Pneumoniae, Unique Metal-Dependent Tyrosine Phosphatases within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe263

b:30.3
occ:1.00
O A:HOH349 1.8 44.9 1.0
NE2 A:HIS136 2.0 29.1 1.0
OE1 A:GLU80 2.1 26.0 1.0
OE1 A:GLU108 2.2 31.5 1.0
O A:HOH347 2.2 32.6 1.0
O A:HOH348 2.4 30.0 1.0
CD2 A:HIS136 3.0 30.6 1.0
CD A:GLU80 3.0 24.8 1.0
CE1 A:HIS136 3.1 29.9 1.0
CD A:GLU108 3.1 30.5 1.0
O A:HOH376 3.2 35.3 1.0
OE2 A:GLU80 3.2 29.5 1.0
CE1 A:HIS42 3.4 39.5 1.0
FE A:FE264 3.5 25.5 1.0
CG A:GLU108 3.7 27.2 1.0
O A:HOH405 3.8 47.2 1.0
O A:HOH374 3.8 47.9 1.0
OE2 A:GLU108 3.9 33.4 1.0
ND1 A:HIS136 4.2 29.9 1.0
CG A:HIS136 4.2 29.4 1.0
NE2 A:HIS42 4.2 41.7 1.0
ND1 A:HIS42 4.3 40.6 1.0
CG A:GLU80 4.4 26.5 1.0
OD2 A:ASP194 4.4 27.4 1.0
NE2 A:HIS5 4.6 21.6 1.0
CE1 A:HIS5 4.6 24.7 1.0
CB A:GLU108 4.7 27.3 1.0
MG A:MG265 4.9 38.0 1.0
OD1 A:ASP194 4.9 25.2 1.0

Iron binding site 2 out of 2 in 3qy6

Go back to Iron Binding Sites List in 3qy6
Iron binding site 2 out of 2 in the Crystal Structures of Ywqe From Bacillus Subtilis and Cpsb From Streptococcus Pneumoniae, Unique Metal-Dependent Tyrosine Phosphatases


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structures of Ywqe From Bacillus Subtilis and Cpsb From Streptococcus Pneumoniae, Unique Metal-Dependent Tyrosine Phosphatases within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe264

b:25.5
occ:1.00
O A:HOH348 1.3 30.0 1.0
NE2 A:HIS7 2.0 26.0 1.0
OE2 A:GLU80 2.2 29.5 1.0
OD1 A:ASP194 2.2 25.2 1.0
NE2 A:HIS5 2.2 21.6 1.0
O A:HOH376 2.2 35.3 1.0
CD2 A:HIS7 3.0 25.6 1.0
CE1 A:HIS7 3.0 27.5 1.0
CD A:GLU80 3.0 24.8 1.0
CG A:ASP194 3.1 24.6 1.0
CD2 A:HIS5 3.1 25.0 1.0
CE1 A:HIS5 3.2 24.7 1.0
OD2 A:ASP194 3.3 27.4 1.0
OE1 A:GLU80 3.4 26.0 1.0
FE A:FE263 3.5 30.3 1.0
O A:HOH349 3.5 44.9 1.0
CE1 A:HIS42 4.1 39.5 1.0
NE2 A:HIS42 4.1 41.7 1.0
ND1 A:HIS7 4.1 27.5 1.0
CG A:HIS7 4.1 26.3 1.0
CE1 A:HIS196 4.2 32.0 1.0
O A:HOH405 4.2 47.2 1.0
ND1 A:HIS5 4.3 22.5 1.0
CG A:HIS5 4.3 22.2 1.0
CG A:GLU80 4.3 26.5 1.0
MG A:MG265 4.3 38.0 1.0
CB A:ASP194 4.4 25.2 1.0
CD2 A:HIS136 4.5 30.6 1.0
NE2 A:HIS136 4.6 29.1 1.0
CB A:GLU80 4.7 25.4 1.0
NE2 A:HIS196 4.7 33.8 1.0
CA A:ASP194 4.7 25.0 1.0
O A:HOH347 4.8 32.6 1.0
ND1 A:HIS42 4.9 40.6 1.0
CD2 A:HIS42 4.9 38.7 1.0

Reference:

H.S.Kim, S.J.Lee, H.J.Yoon, D.R.An, D.J.Kim, S.J.Kim, S.W.Suh. Crystal Structures of Ywqe From Bacillus Subtilis and Cpsb From Streptococcus Pneumoniae, Unique Metal-Dependent Tyrosine Phosphatases. J.Struct.Biol. V. 175 442 2011.
ISSN: ISSN 1047-8477
PubMed: 21605684
DOI: 10.1016/J.JSB.2011.05.007
Page generated: Sun Dec 13 15:19:30 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy