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Iron in PDB 3qy8: Crystal Structures of Ywqe From Bacillus Subtilis and Cpsb From Streptococcus Pneumoniae, Unique Metal-Dependent Tyrosine Phosphatases

Enzymatic activity of Crystal Structures of Ywqe From Bacillus Subtilis and Cpsb From Streptococcus Pneumoniae, Unique Metal-Dependent Tyrosine Phosphatases

All present enzymatic activity of Crystal Structures of Ywqe From Bacillus Subtilis and Cpsb From Streptococcus Pneumoniae, Unique Metal-Dependent Tyrosine Phosphatases:
3.1.3.48;

Protein crystallography data

The structure of Crystal Structures of Ywqe From Bacillus Subtilis and Cpsb From Streptococcus Pneumoniae, Unique Metal-Dependent Tyrosine Phosphatases, PDB code: 3qy8 was solved by H.S.Kim, S.J.Lee, H.J.Yoon, D.R.An, D.J.Kim, S.-J.Kim, S.W.Suh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 42.160, 61.634, 111.662, 90.00, 90.00, 90.00
R / Rfree (%) 18.3 / 23.3

Other elements in 3qy8:

The structure of Crystal Structures of Ywqe From Bacillus Subtilis and Cpsb From Streptococcus Pneumoniae, Unique Metal-Dependent Tyrosine Phosphatases also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structures of Ywqe From Bacillus Subtilis and Cpsb From Streptococcus Pneumoniae, Unique Metal-Dependent Tyrosine Phosphatases (pdb code 3qy8). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structures of Ywqe From Bacillus Subtilis and Cpsb From Streptococcus Pneumoniae, Unique Metal-Dependent Tyrosine Phosphatases, PDB code: 3qy8:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 3qy8

Go back to Iron Binding Sites List in 3qy8
Iron binding site 1 out of 2 in the Crystal Structures of Ywqe From Bacillus Subtilis and Cpsb From Streptococcus Pneumoniae, Unique Metal-Dependent Tyrosine Phosphatases


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structures of Ywqe From Bacillus Subtilis and Cpsb From Streptococcus Pneumoniae, Unique Metal-Dependent Tyrosine Phosphatases within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe252

b:23.3
occ:1.00
 O A:HOH283 2.0 40.5 1.0
OE2 A:GLU80 2.1 19.7 1.0
O A:HOH258 2.2 20.5 1.0
NE2 A:HIS136 2.2 15.1 1.0
OE1 A:GLU108 2.3 19.6 1.0
O3 A:SO4255 2.6 52.8 1.0
CD A:GLU80 3.0 17.8 1.0
CD2 A:HIS136 3.1 13.9 1.0
CD A:GLU108 3.2 21.7 1.0
CE1 A:HIS136 3.2 17.0 1.0
O1 A:SO4255 3.3 52.4 1.0
S A:SO4255 3.3 55.4 1.0
OE1 A:GLU80 3.3 14.9 1.0
NH2 A:ARG139 3.4 42.0 1.0
FE A:FE253 3.4 18.4 1.0
O4 A:SO4255 3.6 54.2 1.0
OE2 A:GLU108 3.7 20.6 1.0
CZ A:ARG139 4.0 47.4 1.0
CG A:GLU108 4.2 16.7 1.0
CE1 A:HIS42 4.2 32.0 1.0
CB A:GLU108 4.2 16.0 1.0
CG A:HIS136 4.2 13.6 1.0
CE1 A:HIS5 4.3 12.6 1.0
NH1 A:ARG139 4.3 47.3 1.0
ND1 A:HIS136 4.3 13.9 1.0
CG A:GLU80 4.4 14.3 1.0
NE2 A:HIS5 4.4 14.4 1.0
OD2 A:ASP199 4.5 14.2 1.0
O A:HOH266 4.7 30.9 1.0
O2 A:SO4255 4.7 55.0 1.0
OD1 A:ASP199 4.9 13.3 1.0
NE A:ARG139 4.9 42.4 1.0
CB A:ALA135 4.9 11.6 1.0

Iron binding site 2 out of 2 in 3qy8

Go back to Iron Binding Sites List in 3qy8
Iron binding site 2 out of 2 in the Crystal Structures of Ywqe From Bacillus Subtilis and Cpsb From Streptococcus Pneumoniae, Unique Metal-Dependent Tyrosine Phosphatases


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structures of Ywqe From Bacillus Subtilis and Cpsb From Streptococcus Pneumoniae, Unique Metal-Dependent Tyrosine Phosphatases within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe253

b:18.4
occ:1.00
 O A:HOH258 1.8 20.5 1.0
O1 A:SO4255 2.1 52.4 1.0
OE1 A:GLU80 2.1 14.9 1.0
NE2 A:HIS5 2.1 14.4 1.0
OD1 A:ASP199 2.2 13.3 1.0
NE2 A:HIS7 2.3 15.4 1.0
CD A:GLU80 2.9 17.8 1.0
CE1 A:HIS5 3.0 12.6 1.0
CG A:ASP199 3.1 15.0 1.0
CD2 A:HIS7 3.1 17.9 1.0
CD2 A:HIS5 3.2 9.6 1.0
OE2 A:GLU80 3.2 19.7 1.0
CE1 A:HIS7 3.3 18.2 1.0
FE A:FE252 3.4 23.3 1.0
S A:SO4255 3.4 55.4 1.0
OD2 A:ASP199 3.5 14.2 1.0
O3 A:SO4255 3.9 52.8 1.0
O4 A:SO4255 4.1 54.2 1.0
CE1 A:HIS201 4.1 25.4 1.0
ND1 A:HIS5 4.2 10.7 1.0
CE1 A:HIS42 4.2 32.0 1.0
CG A:GLU80 4.2 14.3 1.0
CG A:HIS5 4.3 10.8 1.0
NE2 A:HIS42 4.3 30.7 1.0
CG A:HIS7 4.3 15.9 1.0
ND1 A:HIS7 4.3 17.0 1.0
CB A:ASP199 4.3 14.7 1.0
O2 A:SO4255 4.4 55.0 1.0
MG A:MG254 4.4 8.8 1.0
O A:HOH283 4.6 40.5 1.0
NE2 A:HIS201 4.6 28.5 1.0
CB A:GLU80 4.6 13.8 1.0
CA A:ASP199 4.7 17.5 1.0
CD2 A:HIS136 4.8 13.9 1.0
NE2 A:HIS136 4.9 15.1 1.0

Reference:

H.S.Kim, S.J.Lee, H.J.Yoon, D.R.An, D.J.Kim, S.J.Kim, S.W.Suh. Crystal Structures of Ywqe From Bacillus Subtilis and Cpsb From Streptococcus Pneumoniae, Unique Metal-Dependent Tyrosine Phosphatases. J.Struct.Biol. V. 175 442 2011.
ISSN: ISSN 1047-8477
PubMed: 21605684
DOI: 10.1016/J.JSB.2011.05.007
Page generated: Sun Aug 4 18:56:12 2024

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