Iron in PDB 3r5t: Crystal Structure of Holo-Viup

The structure of Crystal Structure of Holo-Viup, PDB code: 3r5t was solved by N.Li, C.Zhang, B.Li, X.Liu, Y.Huang, S.Xu, L.Gu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	24.60 / 1.45
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	82.496, 55.545, 69.542, 90.00, 117.02, 90.00
R / Rfree (%)	18.2 / 20.9

The binding sites of Iron atom in the Crystal Structure of Holo-Viup (pdb code 3r5t). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of Holo-Viup, PDB code: 3r5t:

Iron binding site 1 out of 1 in the Crystal Structure of Holo-Viup


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Holo-Viup within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe2 b:14.6 occ:1.00 OAJ A:VBN1 2.0 13.9 1.0 OAI A:VBN1 2.1 16.6 1.0 OAF A:VBN1 2.1 15.1 1.0 N A:VBN1 2.1 17.1 1.0 OAH A:VBN1 2.2 14.3 1.0 OAK A:VBN1 2.2 14.8 1.0 CBK A:VBN1 2.9 15.6 1.0 CBN A:VBN1 2.9 16.5 1.0 CBP A:VBN1 3.0 14.7 1.0 CBM A:VBN1 3.0 13.8 1.0 CBO A:VBN1 3.2 15.7 1.0 CA A:VBN1 3.2 20.0 1.0 CBJ A:VBN1 3.2 18.4 1.0 CBR A:VBN1 3.6 17.1 1.0 C A:VBN1 3.9 20.2 1.0 O A:HOH6 3.9 17.5 1.0 O A:HOH380 4.0 16.2 1.0 O A:VBN1 4.0 19.2 1.0 NH2 A:ARG244 4.1 15.9 1.0 CZ A:PHE296 4.2 17.2 1.0 CBL A:VBN1 4.3 16.9 1.0 NH2 A:ARG297 4.3 17.5 1.0 CAO A:VBN1 4.3 15.8 1.0 CAQ A:VBN1 4.3 13.5 1.0 CB A:VBN1 4.4 21.7 1.0 CBQ A:VBN1 4.4 18.6 1.0 CBS A:VBN1 4.4 15.6 1.0 OG1 A:VBN1 4.4 21.4 1.0 NH1 A:ARG297 4.5 15.6 1.0 N A:ALA125 4.5 13.2 1.0 OAG A:VBN1 4.6 16.4 1.0 CB A:ALA125 4.6 13.2 1.0 NBD A:VBN1 4.7 18.3 1.0 NBB A:VBN1 4.8 15.3 1.0 CZ A:ARG297 4.9 17.1 1.0 CAS A:VBN1 4.9 19.8 1.0 CE2 A:PHE296 4.9 16.4 1.0

N.Li, C.Zhang, B.Li, X.Liu, Y.Huang, S.Xu, L.Gu. Unique Iron Coordination in Iron-Chelating Molecule Vibriobactin Helps Vibrio Cholerae Evade Mammalian Siderocalin-Mediated Immune Response. J.Biol.Chem. V. 287 8912 2012.
ISSN: ISSN 0021-9258
PubMed: 22291019
DOI: 10.1074/JBC.M111.316034