Iron in PDB 3s2r: Atchloroneet (H87C Mutant)
Protein crystallography data
The structure of Atchloroneet (H87C Mutant), PDB code: 3s2r
was solved by
O.Livnah,
Y.Eisenberg-Domovich,
R.Nechushtai,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
26.42 /
1.14
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
33.290,
54.105,
72.682,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
18.6 /
19.9
|
Iron Binding Sites:
The binding sites of Iron atom in the Atchloroneet (H87C Mutant)
(pdb code 3s2r). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the
Atchloroneet (H87C Mutant), PDB code: 3s2r:
Jump to Iron binding site number:
1;
2;
3;
4;
Iron binding site 1 out
of 4 in 3s2r
Go back to
Iron Binding Sites List in 3s2r
Iron binding site 1 out
of 4 in the Atchloroneet (H87C Mutant)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Atchloroneet (H87C Mutant) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe500
b:15.4
occ:1.00
|
FE1
|
A:FES500
|
0.0
|
15.4
|
1.0
|
S1
|
A:FES500
|
2.2
|
16.8
|
1.0
|
S2
|
A:FES500
|
2.2
|
15.2
|
1.0
|
SG
|
A:CYS76
|
2.3
|
11.8
|
1.0
|
SG
|
A:CYS74
|
2.4
|
11.4
|
1.0
|
FE2
|
A:FES500
|
2.7
|
15.7
|
1.0
|
CB
|
A:CYS76
|
3.3
|
12.0
|
1.0
|
CB
|
A:CYS74
|
3.4
|
11.5
|
1.0
|
N
|
A:CYS76
|
3.5
|
11.9
|
1.0
|
CA
|
A:CYS74
|
3.7
|
11.4
|
1.0
|
CA
|
A:CYS76
|
3.9
|
11.7
|
1.0
|
N
|
A:ARG75
|
3.9
|
10.7
|
1.0
|
CB
|
A:CYS89
|
4.0
|
12.2
|
1.0
|
N
|
A:CYS89
|
4.2
|
12.4
|
1.0
|
C
|
A:CYS74
|
4.3
|
11.4
|
1.0
|
SG
|
A:CYS89
|
4.3
|
12.6
|
1.0
|
CB
|
A:SER79
|
4.4
|
12.3
|
1.0
|
N
|
A:TRP77
|
4.4
|
11.6
|
1.0
|
N
|
A:SER79
|
4.4
|
12.4
|
1.0
|
C
|
A:CYS76
|
4.5
|
11.3
|
1.0
|
CA
|
A:CYS89
|
4.5
|
11.6
|
1.0
|
SG
|
A:CYS85
|
4.6
|
12.3
|
1.0
|
N
|
A:ARG78
|
4.6
|
12.6
|
1.0
|
C
|
A:ARG75
|
4.7
|
11.7
|
1.0
|
CB
|
A:CYS85
|
4.7
|
12.2
|
1.0
|
CA
|
A:CYS85
|
4.7
|
12.2
|
1.0
|
CA
|
A:SER79
|
4.8
|
12.7
|
1.0
|
CA
|
A:ARG75
|
5.0
|
11.2
|
1.0
|
N
|
A:CYS74
|
5.0
|
10.2
|
1.0
|
|
Iron binding site 2 out
of 4 in 3s2r
Go back to
Iron Binding Sites List in 3s2r
Iron binding site 2 out
of 4 in the Atchloroneet (H87C Mutant)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Atchloroneet (H87C Mutant) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe500
b:15.7
occ:1.00
|
FE2
|
A:FES500
|
0.0
|
15.7
|
1.0
|
S2
|
A:FES500
|
2.3
|
15.2
|
1.0
|
S1
|
A:FES500
|
2.3
|
16.8
|
1.0
|
SG
|
A:CYS85
|
2.3
|
12.3
|
1.0
|
SG
|
A:CYS89
|
2.4
|
12.6
|
1.0
|
FE1
|
A:FES500
|
2.7
|
15.4
|
1.0
|
CB
|
A:CYS89
|
3.2
|
12.2
|
1.0
|
CB
|
A:CYS85
|
3.3
|
12.2
|
1.0
|
N
|
A:CYS89
|
3.9
|
12.4
|
1.0
|
CA
|
A:CYS85
|
3.9
|
12.2
|
1.0
|
N
|
A:GLY87
|
4.0
|
13.3
|
1.0
|
CA
|
A:CYS89
|
4.2
|
11.6
|
1.0
|
CD
|
A:PRO102
|
4.2
|
12.6
|
1.0
|
CA
|
A:GLY87
|
4.2
|
14.1
|
1.0
|
N
|
A:ASP86
|
4.3
|
13.0
|
1.0
|
CB
|
A:PRO102
|
4.4
|
11.8
|
1.0
|
SG
|
A:CYS76
|
4.4
|
11.8
|
1.0
|
N
|
A:SER88
|
4.4
|
12.3
|
1.0
|
C
|
A:CYS85
|
4.4
|
12.2
|
1.0
|
CG
|
A:PRO102
|
4.5
|
13.0
|
1.0
|
C
|
A:GLY87
|
4.6
|
13.4
|
1.0
|
N
|
A:PRO102
|
4.7
|
11.6
|
1.0
|
SG
|
A:CYS74
|
4.7
|
11.4
|
1.0
|
CA
|
A:CYS74
|
4.7
|
11.4
|
1.0
|
CB
|
A:CYS74
|
4.9
|
11.5
|
1.0
|
CA
|
A:PRO102
|
5.0
|
11.6
|
1.0
|
|
Iron binding site 3 out
of 4 in 3s2r
Go back to
Iron Binding Sites List in 3s2r
Iron binding site 3 out
of 4 in the Atchloroneet (H87C Mutant)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Atchloroneet (H87C Mutant) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe500
b:15.7
occ:1.00
|
FE1
|
B:FES500
|
0.0
|
15.7
|
1.0
|
S1
|
B:FES500
|
2.2
|
16.7
|
1.0
|
S2
|
B:FES500
|
2.2
|
14.8
|
1.0
|
SG
|
B:CYS76
|
2.3
|
12.8
|
1.0
|
SG
|
B:CYS74
|
2.3
|
11.1
|
1.0
|
FE2
|
B:FES500
|
2.7
|
15.6
|
1.0
|
CB
|
B:CYS76
|
3.3
|
13.1
|
1.0
|
CB
|
B:CYS74
|
3.4
|
11.6
|
1.0
|
N
|
B:CYS76
|
3.5
|
12.5
|
1.0
|
CA
|
B:CYS74
|
3.7
|
10.9
|
1.0
|
CA
|
B:CYS76
|
3.9
|
12.4
|
1.0
|
N
|
B:ARG75
|
3.9
|
10.6
|
1.0
|
CB
|
B:CYS89
|
4.0
|
13.1
|
1.0
|
N
|
B:CYS89
|
4.2
|
13.3
|
1.0
|
C
|
B:CYS74
|
4.3
|
10.4
|
1.0
|
SG
|
B:CYS89
|
4.3
|
13.2
|
1.0
|
CB
|
B:SER79
|
4.3
|
12.0
|
1.0
|
N
|
B:SER79
|
4.4
|
12.4
|
1.0
|
C
|
B:CYS76
|
4.5
|
11.7
|
1.0
|
N
|
B:TRP77
|
4.5
|
11.4
|
1.0
|
CA
|
B:CYS89
|
4.5
|
13.3
|
1.0
|
C
|
B:ARG75
|
4.6
|
11.9
|
1.0
|
SG
|
B:CYS85
|
4.7
|
11.7
|
1.0
|
CA
|
B:CYS85
|
4.7
|
11.4
|
1.0
|
N
|
B:ARG78
|
4.7
|
11.7
|
1.0
|
CB
|
B:CYS85
|
4.8
|
12.1
|
1.0
|
CA
|
B:SER79
|
4.8
|
12.2
|
1.0
|
CA
|
B:ARG75
|
4.9
|
11.0
|
1.0
|
N
|
B:CYS74
|
5.0
|
9.6
|
1.0
|
|
Iron binding site 4 out
of 4 in 3s2r
Go back to
Iron Binding Sites List in 3s2r
Iron binding site 4 out
of 4 in the Atchloroneet (H87C Mutant)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Atchloroneet (H87C Mutant) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe500
b:15.6
occ:1.00
|
FE2
|
B:FES500
|
0.0
|
15.6
|
1.0
|
S1
|
B:FES500
|
2.2
|
16.7
|
1.0
|
S2
|
B:FES500
|
2.3
|
14.8
|
1.0
|
SG
|
B:CYS85
|
2.3
|
11.7
|
1.0
|
SG
|
B:CYS89
|
2.4
|
13.2
|
1.0
|
FE1
|
B:FES500
|
2.7
|
15.7
|
1.0
|
CB
|
B:CYS89
|
3.3
|
13.1
|
1.0
|
CB
|
B:CYS85
|
3.3
|
12.1
|
1.0
|
CA
|
B:CYS85
|
3.8
|
11.4
|
1.0
|
N
|
B:CYS89
|
3.9
|
13.3
|
1.0
|
N
|
B:GLY87
|
4.0
|
12.2
|
1.0
|
CA
|
B:CYS89
|
4.2
|
13.3
|
1.0
|
CD
|
B:PRO102
|
4.2
|
5.1
|
1.0
|
N
|
B:ASP86
|
4.3
|
11.8
|
1.0
|
CA
|
B:GLY87
|
4.3
|
12.5
|
1.0
|
C
|
B:CYS85
|
4.4
|
12.4
|
1.0
|
SG
|
B:CYS76
|
4.4
|
12.8
|
1.0
|
CB
|
B:PRO102
|
4.4
|
4.2
|
1.0
|
N
|
B:SER88
|
4.4
|
12.8
|
1.0
|
CG
|
B:PRO102
|
4.6
|
4.1
|
1.0
|
C
|
B:GLY87
|
4.6
|
11.9
|
1.0
|
SG
|
B:CYS74
|
4.7
|
11.1
|
1.0
|
N
|
B:PRO102
|
4.7
|
4.4
|
1.0
|
CA
|
B:CYS74
|
4.8
|
10.9
|
1.0
|
CB
|
B:CYS74
|
4.9
|
11.6
|
1.0
|
CA
|
B:PRO102
|
4.9
|
4.2
|
1.0
|
C
|
B:SER88
|
5.0
|
13.6
|
1.0
|
|
Reference:
R.Nechushtai,
A.R.Conlan,
L.Song,
Y.Harir,
O.Yogev,
Y.Eisenberg-Domovich,
O.Livnah,
D.Michaeli,
R.Rosen,
V.Ma,
Y.Luo,
J.A.Zuris,
V.Shulaev,
M.L.Paddock,
Z.Y.Cabantchik,
P.A.Jennings,
R.Mittler.
Arabidopsis Thaliana Chloroneet, A Member of the New Neet Family of Human Proteins, Is Involved in Development, Senescence and Iron Metabolism. To Be Published.
Page generated: Sun Aug 4 19:47:19 2024
|