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Iron in PDB 3s2r: Atchloroneet (H87C Mutant)

Protein crystallography data

The structure of Atchloroneet (H87C Mutant), PDB code: 3s2r was solved by O.Livnah, Y.Eisenberg-Domovich, R.Nechushtai, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 26.42 / 1.14
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 33.290, 54.105, 72.682, 90.00, 90.00, 90.00
R / Rfree (%) 18.6 / 19.9

Iron Binding Sites:

The binding sites of Iron atom in the Atchloroneet (H87C Mutant) (pdb code 3s2r). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Atchloroneet (H87C Mutant), PDB code: 3s2r:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 3s2r

Go back to Iron Binding Sites List in 3s2r
Iron binding site 1 out of 4 in the Atchloroneet (H87C Mutant)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Atchloroneet (H87C Mutant) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe500

b:15.4
occ:1.00
FE1 A:FES500 0.0 15.4 1.0
S1 A:FES500 2.2 16.8 1.0
S2 A:FES500 2.2 15.2 1.0
SG A:CYS76 2.3 11.8 1.0
SG A:CYS74 2.4 11.4 1.0
FE2 A:FES500 2.7 15.7 1.0
CB A:CYS76 3.3 12.0 1.0
CB A:CYS74 3.4 11.5 1.0
N A:CYS76 3.5 11.9 1.0
CA A:CYS74 3.7 11.4 1.0
CA A:CYS76 3.9 11.7 1.0
N A:ARG75 3.9 10.7 1.0
CB A:CYS89 4.0 12.2 1.0
N A:CYS89 4.2 12.4 1.0
C A:CYS74 4.3 11.4 1.0
SG A:CYS89 4.3 12.6 1.0
CB A:SER79 4.4 12.3 1.0
N A:TRP77 4.4 11.6 1.0
N A:SER79 4.4 12.4 1.0
C A:CYS76 4.5 11.3 1.0
CA A:CYS89 4.5 11.6 1.0
SG A:CYS85 4.6 12.3 1.0
N A:ARG78 4.6 12.6 1.0
C A:ARG75 4.7 11.7 1.0
CB A:CYS85 4.7 12.2 1.0
CA A:CYS85 4.7 12.2 1.0
CA A:SER79 4.8 12.7 1.0
CA A:ARG75 5.0 11.2 1.0
N A:CYS74 5.0 10.2 1.0

Iron binding site 2 out of 4 in 3s2r

Go back to Iron Binding Sites List in 3s2r
Iron binding site 2 out of 4 in the Atchloroneet (H87C Mutant)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Atchloroneet (H87C Mutant) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe500

b:15.7
occ:1.00
FE2 A:FES500 0.0 15.7 1.0
S2 A:FES500 2.3 15.2 1.0
S1 A:FES500 2.3 16.8 1.0
SG A:CYS85 2.3 12.3 1.0
SG A:CYS89 2.4 12.6 1.0
FE1 A:FES500 2.7 15.4 1.0
CB A:CYS89 3.2 12.2 1.0
CB A:CYS85 3.3 12.2 1.0
N A:CYS89 3.9 12.4 1.0
CA A:CYS85 3.9 12.2 1.0
N A:GLY87 4.0 13.3 1.0
CA A:CYS89 4.2 11.6 1.0
CD A:PRO102 4.2 12.6 1.0
CA A:GLY87 4.2 14.1 1.0
N A:ASP86 4.3 13.0 1.0
CB A:PRO102 4.4 11.8 1.0
SG A:CYS76 4.4 11.8 1.0
N A:SER88 4.4 12.3 1.0
C A:CYS85 4.4 12.2 1.0
CG A:PRO102 4.5 13.0 1.0
C A:GLY87 4.6 13.4 1.0
N A:PRO102 4.7 11.6 1.0
SG A:CYS74 4.7 11.4 1.0
CA A:CYS74 4.7 11.4 1.0
CB A:CYS74 4.9 11.5 1.0
CA A:PRO102 5.0 11.6 1.0

Iron binding site 3 out of 4 in 3s2r

Go back to Iron Binding Sites List in 3s2r
Iron binding site 3 out of 4 in the Atchloroneet (H87C Mutant)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Atchloroneet (H87C Mutant) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe500

b:15.7
occ:1.00
FE1 B:FES500 0.0 15.7 1.0
S1 B:FES500 2.2 16.7 1.0
S2 B:FES500 2.2 14.8 1.0
SG B:CYS76 2.3 12.8 1.0
SG B:CYS74 2.3 11.1 1.0
FE2 B:FES500 2.7 15.6 1.0
CB B:CYS76 3.3 13.1 1.0
CB B:CYS74 3.4 11.6 1.0
N B:CYS76 3.5 12.5 1.0
CA B:CYS74 3.7 10.9 1.0
CA B:CYS76 3.9 12.4 1.0
N B:ARG75 3.9 10.6 1.0
CB B:CYS89 4.0 13.1 1.0
N B:CYS89 4.2 13.3 1.0
C B:CYS74 4.3 10.4 1.0
SG B:CYS89 4.3 13.2 1.0
CB B:SER79 4.3 12.0 1.0
N B:SER79 4.4 12.4 1.0
C B:CYS76 4.5 11.7 1.0
N B:TRP77 4.5 11.4 1.0
CA B:CYS89 4.5 13.3 1.0
C B:ARG75 4.6 11.9 1.0
SG B:CYS85 4.7 11.7 1.0
CA B:CYS85 4.7 11.4 1.0
N B:ARG78 4.7 11.7 1.0
CB B:CYS85 4.8 12.1 1.0
CA B:SER79 4.8 12.2 1.0
CA B:ARG75 4.9 11.0 1.0
N B:CYS74 5.0 9.6 1.0

Iron binding site 4 out of 4 in 3s2r

Go back to Iron Binding Sites List in 3s2r
Iron binding site 4 out of 4 in the Atchloroneet (H87C Mutant)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Atchloroneet (H87C Mutant) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe500

b:15.6
occ:1.00
FE2 B:FES500 0.0 15.6 1.0
S1 B:FES500 2.2 16.7 1.0
S2 B:FES500 2.3 14.8 1.0
SG B:CYS85 2.3 11.7 1.0
SG B:CYS89 2.4 13.2 1.0
FE1 B:FES500 2.7 15.7 1.0
CB B:CYS89 3.3 13.1 1.0
CB B:CYS85 3.3 12.1 1.0
CA B:CYS85 3.8 11.4 1.0
N B:CYS89 3.9 13.3 1.0
N B:GLY87 4.0 12.2 1.0
CA B:CYS89 4.2 13.3 1.0
CD B:PRO102 4.2 5.1 1.0
N B:ASP86 4.3 11.8 1.0
CA B:GLY87 4.3 12.5 1.0
C B:CYS85 4.4 12.4 1.0
SG B:CYS76 4.4 12.8 1.0
CB B:PRO102 4.4 4.2 1.0
N B:SER88 4.4 12.8 1.0
CG B:PRO102 4.6 4.1 1.0
C B:GLY87 4.6 11.9 1.0
SG B:CYS74 4.7 11.1 1.0
N B:PRO102 4.7 4.4 1.0
CA B:CYS74 4.8 10.9 1.0
CB B:CYS74 4.9 11.6 1.0
CA B:PRO102 4.9 4.2 1.0
C B:SER88 5.0 13.6 1.0

Reference:

R.Nechushtai, A.R.Conlan, L.Song, Y.Harir, O.Yogev, Y.Eisenberg-Domovich, O.Livnah, D.Michaeli, R.Rosen, V.Ma, Y.Luo, J.A.Zuris, V.Shulaev, M.L.Paddock, Z.Y.Cabantchik, P.A.Jennings, R.Mittler. Arabidopsis Thaliana Chloroneet, A Member of the New Neet Family of Human Proteins, Is Involved in Development, Senescence and Iron Metabolism. To Be Published.
Page generated: Sun Dec 13 15:20:45 2020

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