Iron in PDB 3s7w: Structure of the Tvnirb Form of Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase with An Oxidized GLN360 in A Complex with Hydroxylamine
Protein crystallography data
The structure of Structure of the Tvnirb Form of Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase with An Oxidized GLN360 in A Complex with Hydroxylamine, PDB code: 3s7w
was solved by
A.A.Trofimov,
K.M.Polyakov,
T.V.Tikhonova,
V.O.Popov,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
19.70 /
1.79
|
Space group
|
P 21 3
|
Cell size a, b, c (Å), α, β, γ (°)
|
194.890,
194.890,
194.890,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
15.3 /
17.2
|
Other elements in 3s7w:
The structure of Structure of the Tvnirb Form of Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase with An Oxidized GLN360 in A Complex with Hydroxylamine also contains other interesting chemical elements:
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
16;
Binding sites:
The binding sites of Iron atom in the Structure of the Tvnirb Form of Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase with An Oxidized GLN360 in A Complex with Hydroxylamine
(pdb code 3s7w). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 16 binding sites of Iron where determined in the
Structure of the Tvnirb Form of Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase with An Oxidized GLN360 in A Complex with Hydroxylamine, PDB code: 3s7w:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 16 in 3s7w
Go back to
Iron Binding Sites List in 3s7w
Iron binding site 1 out
of 16 in the Structure of the Tvnirb Form of Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase with An Oxidized GLN360 in A Complex with Hydroxylamine
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Structure of the Tvnirb Form of Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase with An Oxidized GLN360 in A Complex with Hydroxylamine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1004
b:22.8
occ:1.00
|
FE
|
A:HEC1004
|
0.0
|
22.8
|
1.0
|
N
|
A:NO21
|
1.9
|
21.6
|
0.5
|
NZ
|
A:LYS188
|
1.9
|
26.1
|
1.0
|
NC
|
A:HEC1004
|
2.0
|
23.6
|
1.0
|
O
|
A:HOH1011
|
2.0
|
20.2
|
0.5
|
NA
|
A:HEC1004
|
2.0
|
24.0
|
1.0
|
ND
|
A:HEC1004
|
2.0
|
22.1
|
1.0
|
NB
|
A:HEC1004
|
2.1
|
25.3
|
1.0
|
C1C
|
A:HEC1004
|
3.0
|
22.9
|
1.0
|
C4D
|
A:HEC1004
|
3.0
|
22.8
|
1.0
|
CE
|
A:LYS188
|
3.0
|
27.3
|
1.0
|
C1A
|
A:HEC1004
|
3.1
|
23.6
|
1.0
|
C4A
|
A:HEC1004
|
3.1
|
23.3
|
1.0
|
C4B
|
A:HEC1004
|
3.1
|
26.0
|
1.0
|
C4C
|
A:HEC1004
|
3.1
|
22.2
|
1.0
|
C1D
|
A:HEC1004
|
3.1
|
21.5
|
1.0
|
C1B
|
A:HEC1004
|
3.1
|
25.5
|
1.0
|
O1
|
A:NO21
|
3.2
|
20.7
|
0.5
|
CHA
|
A:HEC1004
|
3.4
|
22.7
|
1.0
|
CHC
|
A:HEC1004
|
3.4
|
24.5
|
1.0
|
CHB
|
A:HEC1004
|
3.5
|
22.9
|
1.0
|
CHD
|
A:HEC1004
|
3.5
|
20.2
|
1.0
|
C2C
|
A:HEC1004
|
4.3
|
22.7
|
1.0
|
NE2
|
A:HIS361
|
4.3
|
25.7
|
1.0
|
C3D
|
A:HEC1004
|
4.3
|
20.7
|
1.0
|
C2A
|
A:HEC1004
|
4.3
|
23.3
|
1.0
|
C3A
|
A:HEC1004
|
4.3
|
22.6
|
1.0
|
C3C
|
A:HEC1004
|
4.3
|
23.2
|
1.0
|
C2B
|
A:HEC1004
|
4.3
|
26.2
|
1.0
|
C2D
|
A:HEC1004
|
4.3
|
21.8
|
1.0
|
C3B
|
A:HEC1004
|
4.3
|
28.0
|
1.0
|
CD
|
A:LYS188
|
4.5
|
25.5
|
1.0
|
O
|
A:HOH731
|
4.7
|
27.8
|
1.0
|
O
|
A:HOH965
|
4.8
|
52.3
|
1.0
|
O
|
A:HOH730
|
4.9
|
20.2
|
0.5
|
NH2
|
A:ARG131
|
4.9
|
23.8
|
1.0
|
CMD
|
A:HEC1006
|
5.0
|
20.4
|
1.0
|
CD2
|
A:HIS361
|
5.0
|
24.5
|
1.0
|
|
Iron binding site 2 out
of 16 in 3s7w
Go back to
Iron Binding Sites List in 3s7w
Iron binding site 2 out
of 16 in the Structure of the Tvnirb Form of Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase with An Oxidized GLN360 in A Complex with Hydroxylamine
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Structure of the Tvnirb Form of Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase with An Oxidized GLN360 in A Complex with Hydroxylamine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1005
b:22.0
occ:1.00
|
FE
|
A:HEC1005
|
0.0
|
22.0
|
1.0
|
NE2
|
A:HIS398
|
2.0
|
20.1
|
1.0
|
NE2
|
A:HIS231
|
2.0
|
22.0
|
1.0
|
ND
|
A:HEC1005
|
2.0
|
23.4
|
1.0
|
NA
|
A:HEC1005
|
2.0
|
22.6
|
1.0
|
NC
|
A:HEC1005
|
2.0
|
22.3
|
1.0
|
NB
|
A:HEC1005
|
2.1
|
22.4
|
1.0
|
CE1
|
A:HIS231
|
3.0
|
21.5
|
1.0
|
CD2
|
A:HIS398
|
3.0
|
20.3
|
1.0
|
CE1
|
A:HIS398
|
3.0
|
22.9
|
1.0
|
CD2
|
A:HIS231
|
3.0
|
20.8
|
1.0
|
C4D
|
A:HEC1005
|
3.0
|
21.8
|
1.0
|
C1C
|
A:HEC1005
|
3.0
|
21.9
|
1.0
|
C4A
|
A:HEC1005
|
3.1
|
22.9
|
1.0
|
C1D
|
A:HEC1005
|
3.1
|
23.2
|
1.0
|
C4B
|
A:HEC1005
|
3.1
|
20.0
|
1.0
|
C1B
|
A:HEC1005
|
3.1
|
21.9
|
1.0
|
C1A
|
A:HEC1005
|
3.1
|
22.6
|
1.0
|
C4C
|
A:HEC1005
|
3.1
|
20.5
|
1.0
|
CHC
|
A:HEC1005
|
3.4
|
20.4
|
1.0
|
CHD
|
A:HEC1005
|
3.4
|
21.6
|
1.0
|
CHA
|
A:HEC1005
|
3.4
|
20.8
|
1.0
|
CHB
|
A:HEC1005
|
3.5
|
20.9
|
1.0
|
ND1
|
A:HIS231
|
4.1
|
22.6
|
1.0
|
ND1
|
A:HIS398
|
4.1
|
21.5
|
1.0
|
CG
|
A:HIS398
|
4.1
|
20.4
|
1.0
|
CG
|
A:HIS231
|
4.2
|
21.1
|
1.0
|
C3D
|
A:HEC1005
|
4.3
|
23.2
|
1.0
|
C3A
|
A:HEC1005
|
4.3
|
23.0
|
1.0
|
C2B
|
A:HEC1005
|
4.3
|
20.6
|
1.0
|
C2D
|
A:HEC1005
|
4.3
|
23.9
|
1.0
|
C2C
|
A:HEC1005
|
4.3
|
20.8
|
1.0
|
C2A
|
A:HEC1005
|
4.3
|
23.3
|
1.0
|
C3B
|
A:HEC1005
|
4.3
|
21.3
|
1.0
|
C3C
|
A:HEC1005
|
4.3
|
19.9
|
1.0
|
|
Iron binding site 3 out
of 16 in 3s7w
Go back to
Iron Binding Sites List in 3s7w
Iron binding site 3 out
of 16 in the Structure of the Tvnirb Form of Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase with An Oxidized GLN360 in A Complex with Hydroxylamine
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Structure of the Tvnirb Form of Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase with An Oxidized GLN360 in A Complex with Hydroxylamine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1006
b:20.3
occ:1.00
|
FE
|
A:HEC1006
|
0.0
|
20.3
|
1.0
|
NE2
|
A:HIS119
|
2.0
|
18.9
|
1.0
|
NE2
|
A:HIS300
|
2.0
|
19.7
|
1.0
|
ND
|
A:HEC1006
|
2.0
|
21.3
|
1.0
|
NB
|
A:HEC1006
|
2.0
|
20.0
|
1.0
|
NA
|
A:HEC1006
|
2.1
|
20.1
|
1.0
|
NC
|
A:HEC1006
|
2.1
|
19.7
|
1.0
|
CE1
|
A:HIS119
|
2.9
|
20.3
|
1.0
|
CE1
|
A:HIS300
|
2.9
|
22.1
|
1.0
|
C1D
|
A:HEC1006
|
3.0
|
20.1
|
1.0
|
CD2
|
A:HIS300
|
3.0
|
21.5
|
1.0
|
C1C
|
A:HEC1006
|
3.0
|
19.4
|
1.0
|
C1A
|
A:HEC1006
|
3.1
|
21.1
|
1.0
|
CD2
|
A:HIS119
|
3.1
|
21.1
|
1.0
|
C4B
|
A:HEC1006
|
3.1
|
19.1
|
1.0
|
C4D
|
A:HEC1006
|
3.1
|
18.1
|
1.0
|
C1B
|
A:HEC1006
|
3.1
|
18.6
|
1.0
|
C4C
|
A:HEC1006
|
3.1
|
20.1
|
1.0
|
C4A
|
A:HEC1006
|
3.1
|
20.1
|
1.0
|
CHA
|
A:HEC1006
|
3.4
|
19.3
|
1.0
|
CHC
|
A:HEC1006
|
3.4
|
18.2
|
1.0
|
CHD
|
A:HEC1006
|
3.4
|
19.8
|
1.0
|
CHB
|
A:HEC1006
|
3.5
|
20.2
|
1.0
|
ND1
|
A:HIS119
|
4.0
|
20.9
|
1.0
|
ND1
|
A:HIS300
|
4.1
|
21.8
|
1.0
|
CG
|
A:HIS119
|
4.2
|
19.1
|
1.0
|
CG
|
A:HIS300
|
4.2
|
20.4
|
1.0
|
C2B
|
A:HEC1006
|
4.3
|
21.0
|
1.0
|
C2D
|
A:HEC1006
|
4.3
|
19.5
|
1.0
|
C2C
|
A:HEC1006
|
4.3
|
18.2
|
1.0
|
C2A
|
A:HEC1006
|
4.3
|
19.2
|
1.0
|
C3B
|
A:HEC1006
|
4.3
|
21.2
|
1.0
|
C3D
|
A:HEC1006
|
4.3
|
19.4
|
1.0
|
C3A
|
A:HEC1006
|
4.3
|
17.9
|
1.0
|
C3C
|
A:HEC1006
|
4.3
|
18.4
|
1.0
|
CMD
|
A:HEC1004
|
5.0
|
19.1
|
1.0
|
|
Iron binding site 4 out
of 16 in 3s7w
Go back to
Iron Binding Sites List in 3s7w
Iron binding site 4 out
of 16 in the Structure of the Tvnirb Form of Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase with An Oxidized GLN360 in A Complex with Hydroxylamine
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Structure of the Tvnirb Form of Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase with An Oxidized GLN360 in A Complex with Hydroxylamine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1007
b:21.2
occ:1.00
|
FE
|
A:HEC1007
|
0.0
|
21.2
|
1.0
|
NE2
|
A:HIS383
|
1.9
|
20.7
|
1.0
|
NE2
|
A:HIS491
|
2.0
|
19.2
|
1.0
|
NC
|
A:HEC1007
|
2.0
|
21.8
|
1.0
|
NB
|
A:HEC1007
|
2.0
|
21.2
|
1.0
|
NA
|
A:HEC1007
|
2.0
|
22.0
|
1.0
|
ND
|
A:HEC1007
|
2.1
|
20.2
|
1.0
|
CE1
|
A:HIS491
|
2.9
|
20.6
|
1.0
|
CE1
|
A:HIS383
|
2.9
|
21.1
|
1.0
|
CD2
|
A:HIS383
|
3.0
|
20.5
|
1.0
|
C4B
|
A:HEC1007
|
3.0
|
20.3
|
1.0
|
C1C
|
A:HEC1007
|
3.0
|
21.8
|
1.0
|
C1D
|
A:HEC1007
|
3.1
|
20.1
|
1.0
|
CD2
|
A:HIS491
|
3.1
|
20.5
|
1.0
|
C4D
|
A:HEC1007
|
3.1
|
20.2
|
1.0
|
C4C
|
A:HEC1007
|
3.1
|
20.3
|
1.0
|
C1B
|
A:HEC1007
|
3.1
|
20.5
|
1.0
|
C4A
|
A:HEC1007
|
3.1
|
19.5
|
1.0
|
C1A
|
A:HEC1007
|
3.1
|
21.6
|
1.0
|
CHC
|
A:HEC1007
|
3.4
|
21.0
|
1.0
|
CHD
|
A:HEC1007
|
3.4
|
20.7
|
1.0
|
CHA
|
A:HEC1007
|
3.4
|
21.2
|
1.0
|
CHB
|
A:HEC1007
|
3.4
|
19.6
|
1.0
|
ND1
|
A:HIS491
|
4.0
|
19.9
|
1.0
|
ND1
|
A:HIS383
|
4.1
|
19.9
|
1.0
|
CG
|
A:HIS383
|
4.1
|
20.6
|
1.0
|
CG
|
A:HIS491
|
4.2
|
17.7
|
1.0
|
C2C
|
A:HEC1007
|
4.3
|
22.7
|
1.0
|
C2B
|
A:HEC1007
|
4.3
|
20.0
|
1.0
|
C3B
|
A:HEC1007
|
4.3
|
20.8
|
1.0
|
C3C
|
A:HEC1007
|
4.3
|
21.7
|
1.0
|
C3A
|
A:HEC1007
|
4.3
|
21.0
|
1.0
|
C2D
|
A:HEC1007
|
4.3
|
18.6
|
1.0
|
C2A
|
A:HEC1007
|
4.3
|
22.1
|
1.0
|
C3D
|
A:HEC1007
|
4.3
|
18.3
|
1.0
|
|
Iron binding site 5 out
of 16 in 3s7w
Go back to
Iron Binding Sites List in 3s7w
Iron binding site 5 out
of 16 in the Structure of the Tvnirb Form of Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase with An Oxidized GLN360 in A Complex with Hydroxylamine
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Structure of the Tvnirb Form of Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase with An Oxidized GLN360 in A Complex with Hydroxylamine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1008
b:25.7
occ:1.00
|
FE
|
A:HEC1008
|
0.0
|
25.7
|
1.0
|
NE2
|
A:HIS372
|
1.9
|
24.0
|
1.0
|
NE2
|
A:HIS415
|
1.9
|
25.4
|
1.0
|
NB
|
A:HEC1008
|
2.0
|
24.2
|
1.0
|
NC
|
A:HEC1008
|
2.0
|
27.3
|
1.0
|
ND
|
A:HEC1008
|
2.0
|
27.7
|
1.0
|
NA
|
A:HEC1008
|
2.1
|
25.9
|
1.0
|
CE1
|
A:HIS415
|
2.9
|
28.9
|
1.0
|
CE1
|
A:HIS372
|
2.9
|
25.2
|
1.0
|
CD2
|
A:HIS372
|
3.0
|
24.0
|
1.0
|
C1B
|
A:HEC1008
|
3.0
|
24.7
|
1.0
|
CD2
|
A:HIS415
|
3.0
|
25.6
|
1.0
|
C1D
|
A:HEC1008
|
3.0
|
28.3
|
1.0
|
C1C
|
A:HEC1008
|
3.1
|
26.3
|
1.0
|
C4A
|
A:HEC1008
|
3.1
|
24.4
|
1.0
|
C4B
|
A:HEC1008
|
3.1
|
24.3
|
1.0
|
C4D
|
A:HEC1008
|
3.1
|
28.8
|
1.0
|
C4C
|
A:HEC1008
|
3.1
|
27.9
|
1.0
|
C1A
|
A:HEC1008
|
3.1
|
26.5
|
1.0
|
CHD
|
A:HEC1008
|
3.4
|
29.3
|
1.0
|
CHB
|
A:HEC1008
|
3.4
|
23.9
|
1.0
|
CHC
|
A:HEC1008
|
3.5
|
24.4
|
1.0
|
CHA
|
A:HEC1008
|
3.5
|
26.4
|
1.0
|
ND1
|
A:HIS415
|
4.0
|
29.3
|
1.0
|
ND1
|
A:HIS372
|
4.0
|
26.3
|
1.0
|
CG
|
A:HIS372
|
4.1
|
22.8
|
1.0
|
CG
|
A:HIS415
|
4.1
|
27.5
|
1.0
|
C2B
|
A:HEC1008
|
4.2
|
24.2
|
1.0
|
C2C
|
A:HEC1008
|
4.3
|
28.1
|
1.0
|
C3B
|
A:HEC1008
|
4.3
|
23.9
|
1.0
|
C3D
|
A:HEC1008
|
4.3
|
30.8
|
1.0
|
C2D
|
A:HEC1008
|
4.3
|
29.8
|
1.0
|
C3A
|
A:HEC1008
|
4.3
|
25.4
|
1.0
|
C2A
|
A:HEC1008
|
4.3
|
25.2
|
1.0
|
C3C
|
A:HEC1008
|
4.3
|
28.5
|
1.0
|
|
Iron binding site 6 out
of 16 in 3s7w
Go back to
Iron Binding Sites List in 3s7w
Iron binding site 6 out
of 16 in the Structure of the Tvnirb Form of Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase with An Oxidized GLN360 in A Complex with Hydroxylamine
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Structure of the Tvnirb Form of Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase with An Oxidized GLN360 in A Complex with Hydroxylamine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1002
b:24.0
occ:1.00
|
FE
|
A:HEC1002
|
0.0
|
24.0
|
1.0
|
NE2
|
A:HIS234
|
1.9
|
22.9
|
1.0
|
NE2
|
A:HIS39
|
1.9
|
25.1
|
1.0
|
NB
|
A:HEC1002
|
2.0
|
24.0
|
1.0
|
NC
|
A:HEC1002
|
2.1
|
24.2
|
1.0
|
NA
|
A:HEC1002
|
2.1
|
23.4
|
1.0
|
ND
|
A:HEC1002
|
2.1
|
23.8
|
1.0
|
CE1
|
A:HIS39
|
2.9
|
23.7
|
1.0
|
CD2
|
A:HIS234
|
2.9
|
20.6
|
1.0
|
CE1
|
A:HIS234
|
2.9
|
22.5
|
1.0
|
CD2
|
A:HIS39
|
3.0
|
22.8
|
1.0
|
C1B
|
A:HEC1002
|
3.0
|
27.3
|
1.0
|
C4A
|
A:HEC1002
|
3.1
|
26.4
|
1.0
|
C4C
|
A:HEC1002
|
3.1
|
25.0
|
1.0
|
C1D
|
A:HEC1002
|
3.1
|
24.2
|
1.0
|
C1C
|
A:HEC1002
|
3.1
|
25.2
|
1.0
|
C1A
|
A:HEC1002
|
3.1
|
24.6
|
1.0
|
C4D
|
A:HEC1002
|
3.1
|
24.7
|
1.0
|
C4B
|
A:HEC1002
|
3.1
|
25.6
|
1.0
|
CHB
|
A:HEC1002
|
3.4
|
28.3
|
1.0
|
CHD
|
A:HEC1002
|
3.4
|
23.9
|
1.0
|
CHA
|
A:HEC1002
|
3.5
|
25.2
|
1.0
|
CHC
|
A:HEC1002
|
3.5
|
24.7
|
1.0
|
ND1
|
A:HIS39
|
4.0
|
24.4
|
1.0
|
ND1
|
A:HIS234
|
4.0
|
23.7
|
1.0
|
CG
|
A:HIS234
|
4.1
|
23.4
|
1.0
|
CG
|
A:HIS39
|
4.1
|
24.4
|
1.0
|
C2B
|
A:HEC1002
|
4.3
|
25.1
|
1.0
|
C3A
|
A:HEC1002
|
4.3
|
23.6
|
1.0
|
C2C
|
A:HEC1002
|
4.3
|
24.1
|
1.0
|
C2D
|
A:HEC1002
|
4.3
|
22.6
|
1.0
|
C3C
|
A:HEC1002
|
4.3
|
24.7
|
1.0
|
C2A
|
A:HEC1002
|
4.3
|
23.1
|
1.0
|
C3B
|
A:HEC1002
|
4.3
|
24.1
|
1.0
|
C3D
|
A:HEC1002
|
4.3
|
22.2
|
1.0
|
|
Iron binding site 7 out
of 16 in 3s7w
Go back to
Iron Binding Sites List in 3s7w
Iron binding site 7 out
of 16 in the Structure of the Tvnirb Form of Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase with An Oxidized GLN360 in A Complex with Hydroxylamine
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Structure of the Tvnirb Form of Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase with An Oxidized GLN360 in A Complex with Hydroxylamine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1003
b:23.1
occ:1.00
|
FE
|
A:HEC1003
|
0.0
|
23.1
|
1.0
|
NE2
|
A:HIS70
|
2.0
|
21.8
|
1.0
|
NE2
|
A:HIS30
|
2.0
|
23.0
|
1.0
|
NB
|
A:HEC1003
|
2.0
|
22.1
|
1.0
|
NA
|
A:HEC1003
|
2.0
|
22.2
|
1.0
|
NC
|
A:HEC1003
|
2.0
|
23.3
|
1.0
|
ND
|
A:HEC1003
|
2.1
|
23.0
|
1.0
|
CE1
|
A:HIS30
|
2.9
|
22.9
|
1.0
|
CD2
|
A:HIS70
|
3.0
|
22.1
|
1.0
|
CE1
|
A:HIS70
|
3.0
|
22.8
|
1.0
|
CD2
|
A:HIS30
|
3.0
|
22.2
|
1.0
|
C1B
|
A:HEC1003
|
3.0
|
21.4
|
1.0
|
C4A
|
A:HEC1003
|
3.0
|
22.8
|
1.0
|
C1A
|
A:HEC1003
|
3.1
|
22.3
|
1.0
|
C4C
|
A:HEC1003
|
3.1
|
23.0
|
1.0
|
C4B
|
A:HEC1003
|
3.1
|
21.5
|
1.0
|
C1D
|
A:HEC1003
|
3.1
|
22.6
|
1.0
|
C1C
|
A:HEC1003
|
3.1
|
21.8
|
1.0
|
C4D
|
A:HEC1003
|
3.1
|
22.7
|
1.0
|
CHB
|
A:HEC1003
|
3.4
|
22.3
|
1.0
|
CHD
|
A:HEC1003
|
3.4
|
22.6
|
1.0
|
CHA
|
A:HEC1003
|
3.5
|
23.0
|
1.0
|
CHC
|
A:HEC1003
|
3.5
|
20.5
|
1.0
|
ND1
|
A:HIS30
|
4.1
|
24.9
|
1.0
|
ND1
|
A:HIS70
|
4.1
|
21.8
|
1.0
|
CG
|
A:HIS70
|
4.1
|
22.0
|
1.0
|
CG
|
A:HIS30
|
4.1
|
22.3
|
1.0
|
C2B
|
A:HEC1003
|
4.2
|
23.1
|
1.0
|
C3A
|
A:HEC1003
|
4.3
|
22.7
|
1.0
|
C2A
|
A:HEC1003
|
4.3
|
23.0
|
1.0
|
C3B
|
A:HEC1003
|
4.3
|
22.6
|
1.0
|
C3C
|
A:HEC1003
|
4.3
|
21.4
|
1.0
|
C2C
|
A:HEC1003
|
4.3
|
22.4
|
1.0
|
C2D
|
A:HEC1003
|
4.3
|
23.6
|
1.0
|
C3D
|
A:HEC1003
|
4.4
|
24.3
|
1.0
|
|
Iron binding site 8 out
of 16 in 3s7w
Go back to
Iron Binding Sites List in 3s7w
Iron binding site 8 out
of 16 in the Structure of the Tvnirb Form of Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase with An Oxidized GLN360 in A Complex with Hydroxylamine
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Structure of the Tvnirb Form of Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase with An Oxidized GLN360 in A Complex with Hydroxylamine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1001
b:27.6
occ:1.00
|
FE
|
A:HEC1001
|
0.0
|
27.6
|
1.0
|
NE2
|
A:HIS18
|
1.9
|
25.8
|
1.0
|
NE2
|
A:HIS44
|
1.9
|
26.0
|
1.0
|
ND
|
A:HEC1001
|
2.1
|
29.5
|
1.0
|
NB
|
A:HEC1001
|
2.1
|
28.9
|
1.0
|
NA
|
A:HEC1001
|
2.1
|
26.3
|
1.0
|
NC
|
A:HEC1001
|
2.1
|
28.5
|
1.0
|
CE1
|
A:HIS18
|
2.8
|
26.5
|
1.0
|
CE1
|
A:HIS44
|
2.9
|
27.5
|
1.0
|
CD2
|
A:HIS44
|
3.0
|
25.3
|
1.0
|
CD2
|
A:HIS18
|
3.0
|
25.5
|
1.0
|
C4A
|
A:HEC1001
|
3.1
|
27.5
|
1.0
|
C4C
|
A:HEC1001
|
3.1
|
31.4
|
1.0
|
C1D
|
A:HEC1001
|
3.1
|
31.0
|
1.0
|
C1B
|
A:HEC1001
|
3.1
|
30.0
|
1.0
|
C4D
|
A:HEC1001
|
3.1
|
29.3
|
1.0
|
C1C
|
A:HEC1001
|
3.1
|
29.7
|
1.0
|
C1A
|
A:HEC1001
|
3.1
|
27.5
|
1.0
|
C4B
|
A:HEC1001
|
3.1
|
28.5
|
1.0
|
CHB
|
A:HEC1001
|
3.4
|
28.9
|
1.0
|
CHD
|
A:HEC1001
|
3.4
|
31.3
|
1.0
|
CHA
|
A:HEC1001
|
3.5
|
28.0
|
1.0
|
CHC
|
A:HEC1001
|
3.5
|
29.6
|
1.0
|
ND1
|
A:HIS18
|
4.0
|
26.4
|
1.0
|
ND1
|
A:HIS44
|
4.0
|
26.7
|
1.0
|
CG
|
A:HIS18
|
4.1
|
28.0
|
1.0
|
CG
|
A:HIS44
|
4.1
|
27.0
|
1.0
|
C3A
|
A:HEC1001
|
4.3
|
25.2
|
1.0
|
C2D
|
A:HEC1001
|
4.3
|
29.3
|
1.0
|
C2C
|
A:HEC1001
|
4.3
|
29.1
|
1.0
|
C2B
|
A:HEC1001
|
4.3
|
28.5
|
1.0
|
C2A
|
A:HEC1001
|
4.3
|
24.5
|
1.0
|
C3C
|
A:HEC1001
|
4.3
|
30.4
|
1.0
|
C3D
|
A:HEC1001
|
4.3
|
28.8
|
1.0
|
C3B
|
A:HEC1001
|
4.4
|
27.8
|
1.0
|
CMA
|
A:HEC1002
|
4.8
|
25.8
|
1.0
|
|
Iron binding site 9 out
of 16 in 3s7w
Go back to
Iron Binding Sites List in 3s7w
Iron binding site 9 out
of 16 in the Structure of the Tvnirb Form of Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase with An Oxidized GLN360 in A Complex with Hydroxylamine
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Structure of the Tvnirb Form of Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase with An Oxidized GLN360 in A Complex with Hydroxylamine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe1004
b:24.5
occ:1.00
|
FE
|
B:HEC1004
|
0.0
|
24.5
|
1.0
|
N
|
B:NO21
|
1.9
|
23.8
|
0.5
|
NZ
|
B:LYS188
|
1.9
|
27.6
|
1.0
|
O
|
B:HOH1019
|
2.0
|
24.3
|
0.5
|
NC
|
B:HEC1004
|
2.0
|
26.2
|
1.0
|
ND
|
B:HEC1004
|
2.1
|
22.7
|
1.0
|
NB
|
B:HEC1004
|
2.1
|
24.6
|
1.0
|
NA
|
B:HEC1004
|
2.1
|
24.0
|
1.0
|
C1C
|
B:HEC1004
|
3.0
|
24.2
|
1.0
|
C4D
|
B:HEC1004
|
3.1
|
22.1
|
1.0
|
C4B
|
B:HEC1004
|
3.1
|
27.5
|
1.0
|
C1A
|
B:HEC1004
|
3.1
|
24.0
|
1.0
|
C1B
|
B:HEC1004
|
3.1
|
28.0
|
1.0
|
C4A
|
B:HEC1004
|
3.1
|
25.7
|
1.0
|
C4C
|
B:HEC1004
|
3.1
|
23.7
|
1.0
|
C1D
|
B:HEC1004
|
3.1
|
21.6
|
1.0
|
CE
|
B:LYS188
|
3.1
|
29.1
|
1.0
|
O2
|
B:NO21
|
3.1
|
23.5
|
0.5
|
CHC
|
B:HEC1004
|
3.4
|
26.4
|
1.0
|
CHA
|
B:HEC1004
|
3.4
|
22.6
|
1.0
|
CHB
|
B:HEC1004
|
3.5
|
24.6
|
1.0
|
CHD
|
B:HEC1004
|
3.5
|
22.9
|
1.0
|
C2C
|
B:HEC1004
|
4.3
|
25.1
|
1.0
|
C3D
|
B:HEC1004
|
4.3
|
21.3
|
1.0
|
C3C
|
B:HEC1004
|
4.3
|
23.5
|
1.0
|
C2B
|
B:HEC1004
|
4.3
|
27.0
|
1.0
|
C3A
|
B:HEC1004
|
4.3
|
25.8
|
1.0
|
C2A
|
B:HEC1004
|
4.3
|
24.2
|
1.0
|
C3B
|
B:HEC1004
|
4.3
|
28.0
|
1.0
|
C2D
|
B:HEC1004
|
4.3
|
22.7
|
1.0
|
NE2
|
B:HIS361
|
4.3
|
24.9
|
1.0
|
CD
|
B:LYS188
|
4.5
|
23.4
|
1.0
|
O
|
B:HOH972
|
4.7
|
56.8
|
1.0
|
O
|
B:HOH739
|
4.7
|
28.1
|
1.0
|
NH2
|
B:ARG131
|
4.9
|
24.7
|
1.0
|
O
|
B:HOH738
|
4.9
|
21.9
|
0.5
|
O
|
B:HOH750
|
5.0
|
32.3
|
1.0
|
CMD
|
B:HEC1006
|
5.0
|
19.6
|
1.0
|
|
Iron binding site 10 out
of 16 in 3s7w
Go back to
Iron Binding Sites List in 3s7w
Iron binding site 10 out
of 16 in the Structure of the Tvnirb Form of Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase with An Oxidized GLN360 in A Complex with Hydroxylamine
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Structure of the Tvnirb Form of Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase with An Oxidized GLN360 in A Complex with Hydroxylamine within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe1005
b:22.5
occ:1.00
|
FE
|
B:HEC1005
|
0.0
|
22.5
|
1.0
|
NE2
|
B:HIS398
|
2.0
|
21.8
|
1.0
|
NE2
|
B:HIS231
|
2.0
|
21.0
|
1.0
|
ND
|
B:HEC1005
|
2.0
|
22.2
|
1.0
|
NA
|
B:HEC1005
|
2.0
|
22.8
|
1.0
|
NB
|
B:HEC1005
|
2.1
|
21.5
|
1.0
|
NC
|
B:HEC1005
|
2.1
|
22.3
|
1.0
|
CE1
|
B:HIS231
|
3.0
|
21.2
|
1.0
|
CE1
|
B:HIS398
|
3.0
|
23.1
|
1.0
|
CD2
|
B:HIS398
|
3.0
|
21.7
|
1.0
|
CD2
|
B:HIS231
|
3.0
|
23.2
|
1.0
|
C4D
|
B:HEC1005
|
3.0
|
22.3
|
1.0
|
C4A
|
B:HEC1005
|
3.1
|
21.3
|
1.0
|
C4B
|
B:HEC1005
|
3.1
|
19.9
|
1.0
|
C1C
|
B:HEC1005
|
3.1
|
21.1
|
1.0
|
C1B
|
B:HEC1005
|
3.1
|
21.6
|
1.0
|
C4C
|
B:HEC1005
|
3.1
|
20.8
|
1.0
|
C1D
|
B:HEC1005
|
3.1
|
21.4
|
1.0
|
C1A
|
B:HEC1005
|
3.1
|
21.0
|
1.0
|
CHC
|
B:HEC1005
|
3.4
|
19.8
|
1.0
|
CHB
|
B:HEC1005
|
3.4
|
21.2
|
1.0
|
CHA
|
B:HEC1005
|
3.4
|
20.4
|
1.0
|
CHD
|
B:HEC1005
|
3.4
|
20.9
|
1.0
|
ND1
|
B:HIS231
|
4.1
|
22.0
|
1.0
|
ND1
|
B:HIS398
|
4.1
|
22.2
|
1.0
|
CG
|
B:HIS398
|
4.1
|
22.2
|
1.0
|
CG
|
B:HIS231
|
4.2
|
20.5
|
1.0
|
C3A
|
B:HEC1005
|
4.3
|
20.9
|
1.0
|
C3D
|
B:HEC1005
|
4.3
|
21.8
|
1.0
|
C2B
|
B:HEC1005
|
4.3
|
21.0
|
1.0
|
C2A
|
B:HEC1005
|
4.3
|
21.5
|
1.0
|
C3B
|
B:HEC1005
|
4.3
|
20.9
|
1.0
|
C2C
|
B:HEC1005
|
4.3
|
22.3
|
1.0
|
C2D
|
B:HEC1005
|
4.3
|
22.4
|
1.0
|
C3C
|
B:HEC1005
|
4.3
|
20.6
|
1.0
|
|
Reference:
A.A.Trofimov,
K.M.Polyakov,
T.V.Tikhonova,
V.O.Popov.
Structure of the Tvnirb Form of Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase with An Oxidized GLN360 in A Complex with Hydroxylamine To Be Published.
Page generated: Sun Aug 4 19:52:44 2024
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